BAC Information

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BAC

Clone NameB6Ng01-302E01
Chromosome17 (Build37)
Map Location 29,223,117 - 29,367,313
singlet/doubletdoublet
Overlap geneLOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5
Upstream geneScube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3
Downstream genePpil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E01.bB6Ng01-302E01.g
ACCGA096352GA096353
length1,0741,080
definitionB6Ng01-302E01.b B6Ng01-302E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,366,231 - 29,367,313)(29,223,117 - 29,224,203)
sequence
gaattcactgtagctgttttcagacacaccagaagagggcgtcagatccc
atcacagatggttgtgagccaccatgtggttgctgggatttgaactcagg
acctctggaagagcagtcagtgctcttaaccactgagccatctctccagc
ccctgagctttaactcttttgacttgtgttcttctgagacaactaagttg
ccagatttccactgaactccccatgtggcccaagcgggccttgaacttgt
gattctcctgtctcagaatcatagctagcaggcctgggctgtcaggctta
acatttgcagcctggtgggtttctttgagaattggacaacaaggcaaacc
tgcatccaacacacatgtaccattaccgatcgcttggtttcgggggtcca
tgatcctcactgaggacccccagcctggaatagtcgaagtccagggtctt
aacgtactttctcaatacagccaagtacaaactcagcatgtctgtgagag
agaaccagggaggcatatcccctcagccaggggctccgtcccagcccctc
actcacttctctctggcctctctgctagaaagtgacaccctcagaccctg
caagggaacccccatcaccttccacggggacctcagaggctcccaggccc
cacagcctgctaatgttcctcccagcctccctcgagttggggagttggaa
atgagcccttgggggctgcaggaagcgaaagggccttggctctgccttcc
cagcctcggtttaaggaacaaaggaggcgaagctgcagctgctgagccga
cagctcaaggcttcgtgctctttttgggggaaaaaaaatacattttgact
gttggggaatttttttatcttattttttctcttgagttctcccaaagtag
aaagcagaggaaaaccatgtacggtctggtttaatctgctctgctagtgc
cctggtggctggggccctgcttggactgaagcctggtctcacaggtctct
ggctgtgtgttctctgggcaagctactctcttctcctagcagagtgtcat
agggggcagatgagttgactgggg
gaattccaggacaaccagggctatacagagaaaccctgtctcgaaaaaca
aaaaaacaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaagaaaag
aaacacaagctgatgggctggagagatgacttagcagttaggagtgccaa
ctgctcttccgaaggtcctgagttcaaatctcagcaaccacatggtggct
cacaaccatccataacaagatctgattcctgcttctggagtgtctgaaga
cagaagatattacagataataaataaataaatatttaaaaaagaaagaga
aagaaagaaacccgagctgaagctgggcacggtgggacagtacccttaga
ggcagcactccagaggcagagacaggtggattcctgtgagtctgaggcca
gcctggtctacagagcaagttctaggacagccagggctacatagcgaaac
cctgtctcaaacaaacaagaaacactaggcagaacagcccctgaggaatg
acatgcaaggtaaatgacacgcaagtttggcctctgacacagataccccc
acacacacatatacatgtatacttgcacctatacacatgtacaggcacac
acatatacacacacacaagaaaaaaagaaaaaaggttggttcccttggca
taaattttagtcttcattaagtaaggtcacacaggtaaagagccaagcag
gtacagagaaatctcccataaacattattttcattactggagtatagata
ctcccagggaaaggatcccttggaattcactagtcacttaaactccccgt
gaattcgcagtgtgcacacctgtcagggttataagggagtcaggttaggc
aggaagaggaaatggggtctgatggagaccagaggcctgagagtggctca
gctggtcctgcctggagctggttcagcagtctgggacttttccatcacaa
tcagccatctggtgcactttcatgcagaacagcatgagctgaaagcctca
tttctgagtaagtctgacgagatcagctatgctactgctgcctctgctca
tacctgtcagctcttgactccatactggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29366231_29367313
seq2: B6Ng01-302E01.b_44_1117 (reverse)

seq1  CCCCAGTCACCCTCATCTGCCCCCTCTGAACACTTCTGGCTTAGAGAGAG  50
      |||||||||  |||||||||||||| || |||| ||| |||  |||| ||
seq2  CCCCAGTCA-ACTCATCTGCCCCCTATG-ACAC-TCT-GCTAGGAGA-AG  45

seq1  AGAGTAGCCTGCCCAGAG-ACACACAGCCAGAGGACCCTGTGAGACCAGG  99
      |||||||| ||||||||| ||||||||||||||   ||||||||||||||
seq2  AGAGTAGCTTGCCCAGAGAACACACAGCCAGAG--ACCTGTGAGACCAGG  93

seq1  CCTTCAGGCCCAAGCAGGGCCCCAGCCACCAGGGCACTAAGCAGAGCAGA  149
       ||||| | ||||||||||||||||||||||||||||| |||||||||||
seq2  -CTTCA-GTCCAAGCAGGGCCCCAGCCACCAGGGCACT-AGCAGAGCAGA  140

seq1  TTAAACCAGACCGTACATGGTTTTCCTCTGCTTTCTACTTTGGGAGAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCAGACCGTACATGGTTTTCCTCTGCTTTCTACTTTGGGAGAACT  190

seq1  CAAAGAG-AAAAATAAGATAAAAAAATTCCCCAACAGTCAAAATGTATTT  248
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAGAGAAAAAATAAGATAAAAAAATTCCCCAACAGTCAAAATGTATTT  239

seq1  TTTTTCCCCCAAAAAGAGCACGAAGCCTTGAGCTGTCGGCTCAGCAGCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTTCCCCCAAAAAGAGCACGAAGCCTTGAGCTGTCGGCTCAGCAG-CT  288

seq1  GCAGCTTCGCCTCCTTTGTTCCTTAAACCGAGGCTGGGAAGGCAGAGCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCGCCTCCTTTGTTCCTTAAACCGAGGCTGGGAAGGCAGAGCCA  338

seq1  AGGCCC-TTCGCTTCCTGCAGCCCCCAAGGGCTCATTTCCAACTCCCCAA  397
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTTCGCTTCCTGCAGCCCCCAAGGGCTCATTTCCAACTCCCCAA  388

seq1  CTCGAGGGAGGCTGGGAGGAACATTAGCAGGCTGTGGGGCCTGGGAGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGGAGGCTGGGAGGAACATTAGCAGGCTGTGGGGCCTGGGAGCCT  438

seq1  CTGAGGTCCCCGTGGAAGGTGATGGGGGTTCCCTTGCAGGGTCTGAGGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCCCGTGGAAGGTGATGGGGGTTCCCTTGCAGGGTCTGAGGGT  488

seq1  GTCACTTTCTAGCAGAGAGGCCAGAGAGAAGTGAGTGAGGGGCTGGGACG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTCTAGCAGAGAGGCCAGAGAGAAGTGAGTGAGGGGCTGGGACG  538

seq1  GAGCCCCTGGCTGAGGGGATATGCCTCCCTGGTTCTCTCTCACAGACATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTGGCTGAGGGGATATGCCTCCCTGGTTCTCTCTCACAGACATG  588

seq1  CTGAGTTTGTACTTGGCTGTATTGAGAAAGTACGTTAAGACCCTGGACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGTACTTGGCTGTATTGAGAAAGTACGTTAAGACCCTGGACTT  638

seq1  CGACTATTCCAGGCTGGGGGTCCTCAGTGAGGATCATGGACCCCCGAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTATTCCAGGCTGGGGGTCCTCAGTGAGGATCATGGACCCCCGAAAC  688

seq1  CAAGCGATCGGTAATGGTACATGTGTGTTGGATGCAGGTTTGCCTTGTTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGATCGGTAATGGTACATGTGTGTTGGATGCAGGTTTGCCTTGTTG  738

seq1  TCCAATTCTCAAAGAAACCCACCAGGCTGCAAATGTTAAGCCTGACAGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCTCAAAGAAACCCACCAGGCTGCAAATGTTAAGCCTGACAGCC  788

seq1  CAGGCCTGCTAGCTATGATTCTGAGACAGGAGAATCACAAGTTCAAGGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGCTAGCTATGATTCTGAGACAGGAGAATCACAAGTTCAAGGCC  838

seq1  CGCTTGGGCCACATGGGGAGTTCAGTGGAAATCTGGCAACTTAGTTGTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGGGCCACATGGGGAGTTCAGTGGAAATCTGGCAACTTAGTTGTCT  888

seq1  CAGAAGAACACAAGTCAAAAGAGTTAAAGCTCAGGGGCTGGAGAGATGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAACACAAGTCAAAAGAGTTAAAGCTCAGGGGCTGGAGAGATGGC  938

seq1  TCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATC  988

seq1  CCAGCAACCACATGGTGGCTCACAACCATCTGTGATGGGATCTGACGCCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCACATGGTGGCTCACAACCATCTGTGATGGGATCTGACGCCC  1038

seq1  TCTTCTGGTGTGTCTGAAAACAGCTACAGTGAATTC  1083
      ||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTGTGTCTGAAAACAGCTACAGTGAATTC  1074

seq1: chr17_29223117_29224203
seq2: B6Ng01-302E01.g_67_1146

seq1  GAATTCCAGGACAACCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAACCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACA  50

seq1  AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAG  100

seq1  AAACACAAGCTGATGGGCTGGAGAGATGACTTAGCAGTTAGGAGTGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGCTGATGGGCTGGAGAGATGACTTAGCAGTTAGGAGTGCCAA  150

seq1  CTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCAGCAACCACATGGTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCGAAGGTCCTGAGTTCAAATCTCAGCAACCACATGGTGGCT  200

seq1  CACAACCATCCATAACAAGATCTGATTCCTGCTTCTGGAGTGTCTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCCATAACAAGATCTGATTCCTGCTTCTGGAGTGTCTGAAGA  250

seq1  CAGAAGATATTACAGATAATAAATAAATAAATATTTAAAAAAGAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATATTACAGATAATAAATAAATAAATATTTAAAAAAGAAAGAGA  300

seq1  AAGAAAGAAACCCGAGCTGAAGCTGGGCACGGTGGGACAGTACCCTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAACCCGAGCTGAAGCTGGGCACGGTGGGACAGTACCCTTAGA  350

seq1  GGCAGCACTCCAGAGGCAGAGACAGGTGGATTCCTGTGAGTCTGAGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCACTCCAGAGGCAGAGACAGGTGGATTCCTGTGAGTCTGAGGCCA  400

seq1  GCCTGGTCTACAGAGCAAGTTCTAGGACAGCCAGGGCTACATAGCGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAGAGCAAGTTCTAGGACAGCCAGGGCTACATAGCGAAAC  450

seq1  CCTGTCTCAAACAAACAAGAAACACTAGGCAGAACAGCCCCTGAGGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAAACAAACAAGAAACACTAGGCAGAACAGCCCCTGAGGAATG  500

seq1  ACATGCAAGGTAAATGACACGCAAGTTTGGCCTCTGACACAGATACCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAGGTAAATGACACGCAAGTTTGGCCTCTGACACAGATACCCCC  550

seq1  ACACACACATATACATGTATACTTGCACCTATACACATGTACAGGCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATATACATGTATACTTGCACCTATACACATGTACAGGCACAC  600

seq1  ACATATACACACACACAAGAAAAAAAGAAAAAAGGTTGGTTCCCTTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACACACACACAAGAAAAAAAGAAAAAAGGTTGGTTCCCTTGGCA  650

seq1  TAAATTTTAGTCTTCATTAAGTAAGGTCACACAGGTAAAGAGCCAAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTAGTCTTCATTAAGTAAGGTCACACAGGTAAAGAGCCAAGCAG  700

seq1  GTACAGAGAAATCTCCCATAAACATTATTTTCATTACTGGAGTATAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGAAATCTCCCATAAACATTATTTTCATTACTGGAGTATAGATA  750

seq1  CTCCCAGGGAAAGGATCCCTTGGAATTCACTAGTCACTTAAACTCCCCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGGAAAGGATCCCTTGGAATTCACTAGTCACTTAAACTCCCCGT  800

seq1  GAATTCGCAGTGTGCACACCTGTCAGGGTATAAAGGGAGTCAGGTTAGGC  850
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  GAATTCGCAGTGTGCACACCTGTCAGGGTTATAAGGGAGTCAGGTTAGGC  850

seq1  AGGAAGAGGAAATGGGGTCTGATGGAGACCAGAGGCCTGAGAGTGGCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGAAATGGGGTCTGATGGAGACCAGAGGCCTGAGAGTGGCTCA  900

seq1  GCTGGTCCTGCCTGGAGCGGGTTCAGCAGTCTGGG-CTTTTCCATCAC-A  948
      |||||||||||||||||| |||||||||||||||| |||||||||||| |
seq2  GCTGGTCCTGCCTGGAGCTGGTTCAGCAGTCTGGGACTTTTCCATCACAA  950

seq1  TCAGCCATCTGGTGCACTTTCAATGCAGACAGGCAGGAGGCTGAAAGCCT  998
      ||||||||||||||||||||| |||||||   ||| || |||||||||| 
seq2  TCAGCCATCTGGTGCACTTTC-ATGCAGAACAGCATGA-GCTGAAAGCC-  997

seq1  TCCTTTCTGAGGTAAGTCCTGAAGGGGGAATCAGCTATGCATACTGGCGG  1048
      || ||||||| |||||| |||| | |   ||||||||||| |||| || |
seq2  TCATTTCTGA-GTAAGT-CTGACGAG---ATCAGCTATGC-TACT-GCTG  1040

seq1  CCTCTGCTCCATA-CTGTCAGC-CTCTGCTCCATACTGGCA  1087
      |||||||| |||| |||||||| ||   |||||||||||||
seq2  CCTCTGCT-CATACCTGTCAGCTCTTGACTCCATACTGGCA  1080