BAC Information

Click to search

BAC

Clone NameB6Ng01-302M01
Chromosome17 (Build37)
Map Location 34,473,597 - 34,583,418
singlet/doubletdoublet
Overlap geneH2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142
Upstream geneZfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1
Downstream geneEG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302M01.bB6Ng01-302M01.g
ACCGA096722GA096723
length1,0051,161
definitionB6Ng01-302M01.b B6Ng01-302M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,473,597 - 34,474,321)(34,582,265 - 34,583,418)
sequence
gaattcagtaattctgtttgtgtgtgtatgtgtgtgtgtctgtgcctatg
tctctgtgtaaagcaaacaccatgctctgtgcaaaaaatatatgcattgt
cctggctggcctgtaaaccaggatggcctgggactcacagagatccagga
ggagtactcctctgtgtctggagtactggaatttaagcatgccatgtcct
gctggcttaaattttctttattaattaaattatttatttactttacatcc
tgattgcagcttcccctcccttctttcttcctagtcccccccttccatcg
ccccatccatcccttctccccttctcctcaaaagaaggcaggcctcccat
ggatatcaaccagccttggcatatcaagttgcagtaagaaaaggcgcatc
ttctgttgaggctagatgaggcagcccagttgaaaagggatccaaagtca
gacaatgtagtcagagtcagcccctgctcacactttagagatcccatatg
gagatctctggttggcagttcagtctctgtgagcccagtgggcccaggtt
agttgtttctgtaggttttcttgtgtccttgaccctctggctccaacaat
ccttcccacccctggacaacaggattgccaagctcaatgtgatgtttgat
tgtgggtctctgcatctgtctgcctcagttactgagtgaagcctctctga
agacagttgtgctacgctaccatttgcaagcagagcagagcatctttaac
attgtcaggagtgggctccctctcatggtttgggtctcaagttggaccag
tctttgattggccttcccctccattactgctccatctttatgcctgcaca
tcttgtaggcaggacaaattgtgggtttagggttttgtggctgggttgct
gtcctaatccctccactggaagtcctacctggttcgaacttcatatcctc
cttgctaggagtcttagctatgtcactttcatagactctggggggtttcc
tacta
gaattccagacagtggaaaagcagacggctaagaaaatgagaatgtttag
ttcctttgttggaacaccaggtctgataggaattgtggggctctgaaaag
gcacagcaggggcagacaatacactgatcacttgtggagatggggcagct
ggaagacaggaatatcctttttctttcattcatttttcccttctgtataa
gcctccaattcagaagttagaaaactacagggacacattttcctttgttc
ctcaattttcaagtcagtcaaggaatagtctaaaggcctactaataaccc
aatggagccataacagctcgagggactggagagttcagctactgggtcct
atcacggatggagaaatttggtttaagatcttttcaacattcctggaacg
gtttggggggtctgtcacaaaaagaggcagtcagacttaccgttggatcc
ctcagctgaaaaacaaaggcataaattagtgtaggagtctggtggccctg
ccctcagtggagggactgggtgcctcccgggggacacacgagagtgagcc
ttgtctccctgggtggggtttccctttgcagtgtggtcacctgcttccat
tcaggggtggcatcttctctaacccatgttgccttgactcatgcatacag
ccttcctcccacccttgtcttcctgcccatccctgacaagtctctataaa
ctttggggaggctttctctaaagtgtgtatgtgtgtgacaagctctcatg
tagcccagtctggcactggtgacctatgacccttgattttcccctcctcc
agctctccactactaggttacagtgtggcagcatgctcattccttcctgg
ggactggcaccaactagacgatgggaaaagtaaacgagatggatgttaca
tttcacaaggcagacgaagtggagggaaagacccaacctgagagtcctta
cttacgaacagcattcgagagacttacgggtgcagctttctgaaagcaga
gaacaatgaagaaattatcagcatgcatgcatgtgtgcatgtgttcgtgt
gtaaggctgaagctaaagtcttaattcaccaggaatgaaccctctagcta
taaagaaggggcaggacttcaagctctgtcagctgagggtaatgtccatg
tgtccttttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34473597_34474321
seq2: B6Ng01-302M01.b_46_770

seq1  GAATTCAGTAATTCTGTTTGTGTGTGTATGTGTGTGTGTCTGTGCCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATTCTGTTTGTGTGTGTATGTGTGTGTGTCTGTGCCTATG  50

seq1  TCTCTGTGTAAAGCAAACACCATGCTCTGTGCAAAAAATATATGCATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAAAGCAAACACCATGCTCTGTGCAAAAAATATATGCATTGT  100

seq1  CCTGGCTGGCCTGTAAACCAGGATGGCCTGGGACTCACAGAGATCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGGCCTGTAAACCAGGATGGCCTGGGACTCACAGAGATCCAGGA  150

seq1  GGAGTACTCCTCTGTGTCTGGAGTACTGGAATTTAAGCATGCCATGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACTCCTCTGTGTCTGGAGTACTGGAATTTAAGCATGCCATGTCCT  200

seq1  GCTGGCTTAAATTTTCTTTATTAATTAAATTATTTATTTACTTTACATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTAAATTTTCTTTATTAATTAAATTATTTATTTACTTTACATCC  250

seq1  TGATTGCAGCTTCCCCTCCCTTCTTTCTTCCTAGTCCCCCCCTTCCATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCAGCTTCCCCTCCCTTCTTTCTTCCTAGTCCCCCCCTTCCATCG  300

seq1  CCCCATCCATCCCTTCTCCCCTTCTCCTCAAAAGAAGGCAGGCCTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCATCCCTTCTCCCCTTCTCCTCAAAAGAAGGCAGGCCTCCCAT  350

seq1  GGATATCAACCAGCCTTGGCATATCAAGTTGCAGTAAGAAAAGGCGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCAACCAGCCTTGGCATATCAAGTTGCAGTAAGAAAAGGCGCATC  400

seq1  TTCTGTTGAGGCTAGATGAGGCAGCCCAGTTGAAAAGGGATCCAAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGAGGCTAGATGAGGCAGCCCAGTTGAAAAGGGATCCAAAGTCA  450

seq1  GACAATGTAGTCAGAGTCAGCCCCTGCTCACACTTTAGAGATCCCATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTAGTCAGAGTCAGCCCCTGCTCACACTTTAGAGATCCCATATG  500

seq1  GAGATCTCTGGTTGGCAGTTCAGTCTCTGTGAGCCCAGTGGGCCCAGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCTGGTTGGCAGTTCAGTCTCTGTGAGCCCAGTGGGCCCAGGTT  550

seq1  AGTTGTTTCTGTAGGTTTTCTTGTGTCCTTGACCCTCTGGCTCCAACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTCTGTAGGTTTTCTTGTGTCCTTGACCCTCTGGCTCCAACAAT  600

seq1  CCTTCCCACCCCTGGACAACAGGATTGCCAAGCTCAATGTGATGTTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCACCCCTGGACAACAGGATTGCCAAGCTCAATGTGATGTTTGAT  650

seq1  TGTGGGTCTCTGCATCTGTCTGCCTCAGTTACTGAGTGAAGCCTCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCTCTGCATCTGTCTGCCTCAGTTACTGAGTGAAGCCTCTCTGA  700

seq1  AGACAGTTGTGCTACGCTACCATTT  725
      |||||||||||||||||||||||||
seq2  AGACAGTTGTGCTACGCTACCATTT  725

seq1: chr17_34582265_34583418
seq2: B6Ng01-302M01.g_67_1227 (reverse)

seq1  GCAAAAGCACA----GACAATACCCTCAGCTGACAGAGGCTGGGAGCCCT  46
      ||||||| |||    |||| ||||||||||||||||| ||| | || |||
seq2  GCAAAAGGACACATGGACATTACCCTCAGCTGACAGA-GCTTGAAGTCCT  49

seq1  GCACC-TCTTTATAGCTATAGTG-TCATCCCT-GTG-ATTTAGACTTTTA  92
      || || |||||||||||| || | |||| ||| ||| ||| |||| ||||
seq2  GCCCCTTCTTTATAGCTAGAGGGTTCATTCCTGGTGAATTAAGAC-TTTA  98

seq1  GCTTCAGCCCTACACACGAACACATGCACACATGCATGCATGCTGAT-AT  141
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  GCTTCAGCCTTACACACGAACACATGCACACATGCATGCATGCTGATAAT  148

seq1  TTCTTCATTTGTTCTTCTGCCTTCAGAAAGCTGCACCCGTAAGTCTCTCG  191
      ||||||| |||||| ||||| |||||||||||||||||||||||||||||
seq2  TTCTTCA-TTGTTC-TCTGCTTTCAGAAAGCTGCACCCGTAAGTCTCTCG  196

seq1  AATGCTGTTCGTAAGTAAGGACTCTCAGGTTGGGTCTTTCCCTCCACTTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTTCGTAAGTAAGGACTCTCAGGTTGGGTCTTTCCCTCCACTTC  246

seq1  GTCTGCCTTGTG-AATGTAACATCCATCTCGTTTACTTTTCCCATCGTCT  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTTGTGAAATGTAACATCCATCTCGTTTACTTTTCCCATCGTCT  296

seq1  AGTTGGTGCCAGTCCCCAGGAAGGAATGAGCATGCTGCCACACTGTAACC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGCCAGTCCCCAGGAAGGAATGAGCATGCTGCCACACTGTAACC  346

seq1  TAGTAGTGGAGAGCTGGAGGAGGGGAAAATCAAGGGTCATAGGTCACCAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTGGAGAGCTGGAGGAGGGGAAAATCAAGGGTCATAGGTCACCAG  396

seq1  TGCCAGACTGGGCTACATGAGAGCTTGTCACACACATACACACTTTAGAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACTGGGCTACATGAGAGCTTGTCACACACATACACACTTTAGAG  446

seq1  AAAGCCT-CCCAAAGTTTATAGAGACTTGTCAGGGATGGGCAGGAAGACA  489
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCCCCAAAGTTTATAGAGACTTGTCAGGGATGGGCAGGAAGACA  496

seq1  AGGGTGGGAGGAAGGCTGTATGCATGAGTCAAGGCAACATGGGTTAGAGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGAGGAAGGCTGTATGCATGAGTCAAGGCAACATGGGTTAGAGA  546

seq1  AGATGCCACCCCTGAATGGAAGCAGGTGACCACACTGCAAAGGGAAACCC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCACCCCTGAATGGAAGCAGGTGACCACACTGCAAAGGGAAACCC  596

seq1  CACCCAGGGAGACAAGGCTCACTCTCGTGTGTCCCCCGGGAGGCACCCAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGGAGACAAGGCTCACTCTCGTGTGTCCCCCGGGAGGCACCCAG  646

seq1  TCCCTCCACTGAGGGCAGGGCCACCAGACTCCTACACTAATTTATGCCTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCACTGAGGGCAGGGCCACCAGACTCCTACACTAATTTATGCCTT  696

seq1  TGTTTTTCAGCTGAGGGATCCAACGGTAAGTCTGACTGCCTCTTTTTGTG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAGCTGAGGGATCCAACGGTAAGTCTGACTGCCTCTTTTTGTG  746

seq1  ACAGACCCCCCAAACCGTTCCAGGAATGTTGAAAAGATCTTAAACCAAAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCCCCAAACCGTTCCAGGAATGTTGAAAAGATCTTAAACCAAAT  796

seq1  TTCTCCATCCGTGATAGGACCCAGTAGCTGAACTCTCCAGTCCCTCGAGC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATCCGTGATAGGACCCAGTAGCTGAACTCTCCAGTCCCTCGAGC  846

seq1  TGTTATGGCTCCATTGGGTTATTAGTAGGCCTTTAGACTATTCCTTGACT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGCTCCATTGGGTTATTAGTAGGCCTTTAGACTATTCCTTGACT  896

seq1  GACTTGAAAATTGAGGAACAAAGGAAAATGTGTCCCTGTAGTTTTCTAAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAAATTGAGGAACAAAGGAAAATGTGTCCCTGTAGTTTTCTAAC  946

seq1  TTCTGAATTGGAGGCTTATACAGAAGGGAAAAATGAATGAAAGAAAAAGG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATTGGAGGCTTATACAGAAGGGAAAAATGAATGAAAGAAAAAGG  996

seq1  ATATTCCTGTCTTCCAGCTGCCCCATCTCCACAAGTGATCAGTGTATTGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTGTCTTCCAGCTGCCCCATCTCCACAAGTGATCAGTGTATTGT  1046

seq1  CTGCCCCTGCTGTGCCTTTTCAGAGCCCCACAATTCCTATCAGACCTGGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTGCTGTGCCTTTTCAGAGCCCCACAATTCCTATCAGACCTGGT  1096

seq1  GTTCCAACAAAGGAACTAAACATTCTCATTTTCTTAGCCGTCTGCTTTTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAACAAAGGAACTAAACATTCTCATTTTCTTAGCCGTCTGCTTTTC  1146

seq1  CACTGTCTGGAATTC  1154
      |||||||||||||||
seq2  CACTGTCTGGAATTC  1161