BAC Information

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BAC

Clone NameB6Ng01-303E24
Chromosome17 (Build37)
Map Location 24,249,418 - 24,388,474
singlet/doubletdoublet
Overlap genePdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf
Upstream geneLOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5
Downstream geneAbca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303E24.bB6Ng01-303E24.g
ACCGA097143GA097144
length9211,097
definitionB6Ng01-303E24.b B6Ng01-303E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,387,560 - 24,388,474)(24,249,418 - 24,250,514)
sequence
cgtcctggtgtagccaatcacaaatgcccagagcctgcggggcaggagag
gctagtgatctggggggcgtaactctgtggtcctaccagtaggagctccc
ggcgcgtttgaaaacggggcgggggtggggcccgcgcctgcgtgaggcgc
tccgtgcacttgccccaggcgcgggcgcgcttgagagcggtctaaagcgg
cagtggagggagctcggcgatggggagcggcggtggtgagtgctggcggg
agccgggtaggcgataggtcatacggaacggaggccggaggagcatggac
tcgggcccctgtgacccgggagtgcgcgtcgcatcccccaaagcacgggg
taggcacgtatccccgactgcgagcccgcccgcgcggtttaaatgcccgc
ccggcgcctatgcctctcctgttaccccagggctatttaggttctctact
tagcaaactacgattttacttatctgtgaagtcgtgggcaatccacacga
tatagagcgatctcaggccctgtccggactcttgtgggcggcttgatcac
ctgagggttggctgaggccacaggatctgccccgtgaaaacgtctcacga
cctgggggtgcgatttcacttgttagagtggttaaacacttcccagacat
gctctagagcacacgagtcaagaaactgttatgataaatattcttagaat
gtttggggaattatagctctctgggtatacatttggcctttgctgtaaat
ttggtttccaataagactcaggtgaagagtttggggagtggacagtctct
tagagacctcctgatggaaagcccgaggtcagccactttttgcctcattg
tgaggaggaaaaataggtagaaaagataggctcatttattagttaggaag
gcaggacctggggtggggggg
gaattcagcatacccaagttacttaggtgctagtctctaacagtcctcct
cactcaagaactccagaaaacttctatagctcagttctagaatgcttgcc
tagaatacatgagaacctgggttcaattcccagcatacccaaaagaaaat
ttaaaagtacacaacttgatggtcctgaaatcacagtatctcttaaacca
cccacctgttctgtaaaatagtacattaaggttgccactgaccaaaaggt
gacccattcaaaaactacagcagactgctcagaaaaaataagctaaatct
aagaaaaggccatgagtccacatgttacaaaataaggtgggttgcttctt
tcttccttctttcttcctctttcctcctttttctcctcctccttttcttt
agcctaacaataaactctatgggctaagtagactggttaatttatgtaaa
catggcagtatgtttgtgtatgatttaactaagacagacaaggatgactg
ctttcttgataaacagagacagaaacacagaaccataaagaagccagggc
tctggaaacacagtaggacaggtgtgcacacagtagccaagcgtgagcaa
aggaaagcttagccaccaagaagagctaaaggagttgctcatcttaagat
tgcaaaatgcttaaaaaatctagacagaacatcttgtgacccaaacataa
tgagtacggagacagtggagaagggagagcagatggtaacacgggagggt
gtcttgcctaccccacagtgcagtatgtgaacctgggctcctgagagcag
actccctggaaggccagaggagcagcagcacacttctagataagcaacca
ctatcagtaaccctgtacctgctctgtggcagaaggaaagggcttttctt
tcaggtgggtttgttggatctatcatcatgctaggcaaagcataaaatat
gaaaggtgctgccgggcatggtggtgcactccttaatcccagcactcggg
aggcagagataaggcagatttctgagttggaggcagcctggtcttacgaa
gtggagttccaggaacagccaggctaatacgagaaacctgtctcgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24387560_24388474
seq2: B6Ng01-303E24.b_49_969 (reverse)

seq1  CCCCCCCCCCCCAAGGTCCTGCCTTCCT-ACTTATAAATGCGCCTATC-T  48
       ||||||| ||| ||||||||||||||| ||| ||||||| ||||||| |
seq2  -CCCCCCCACCCCAGGTCCTGCCTTCCTAACTAATAAATGAGCCTATCTT  49

seq1  TTCTACCTATTTTTCCTCCTCACACTGAGGC-AAAAGTGGCTGACCTCGG  97
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  TTCTACCTATTTTTCCTCCTCACAATGAGGCAAAAAGTGGCTGACCTCGG  99

seq1  GCTTTCCATCAGGAGGTCTCTAAGAGACTGTCCACT-CCCAAACTCTTCA  146
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTTCCATCAGGAGGTCTCTAAGAGACTGTCCACTCCCCAAACTCTTCA  149

seq1  CCTGAGTCTTATTGGAAACCAAATTTACAGCAAAGGCCAAATGTATACCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCTTATTGGAAACCAAATTTACAGCAAAGGCCAAATGTATACCC  199

seq1  AGAGAGCTATAATT-CCCAAACATTCTAAGAATA-TTATCATAACAGTTT  244
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  AGAGAGCTATAATTCCCCAAACATTCTAAGAATATTTATCATAACAGTTT  249

seq1  CTTGACTCGTGTGCTCTAGAGCATGTCT-GGAAGTGTTTAACCACTCTAA  293
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTGACTCGTGTGCTCTAGAGCATGTCTGGGAAGTGTTTAACCACTCTAA  299

seq1  CAAGTGAAATCGCACCCCCAGGTCGTGAGACGTTTTCACGGGGCAGATCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAAATCGCACCCCCAGGTCGTGAGACGTTTTCACGGGGCAGATCC  349

seq1  TGTGGCCTCAGCCAACCCTCAGGTGATCAAGCCGCCCACAAGAGTCCGGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCAGCCAACCCTCAGGTGATCAAGCCGCCCACAAGAGTCCGGA  399

seq1  CAGGGCCTGAGATCGCTCTATATCGTGTGGATTGCCCACGACTTCACAGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTGAGATCGCTCTATATCGTGTGGATTGCCCACGACTTCACAGA  449

seq1  TAAGTAAAATCGTAGTTTGCTAAGTAGAGAACCTAAATAGCCCTGGGGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAAATCGTAGTTTGCTAAGTAGAGAACCTAAATAGCCCTGGGGTA  499

seq1  ACAGGAGAGGCATAGGCGCCGGGCGGGCATTTAAACCGCGCGGGCGGGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGGCATAGGCGCCGGGCGGGCATTTAAACCGCGCGGGCGGGCT  549

seq1  CGCAGTCGGGGATACGTGCCTACCCCGTGCTTTGGGGGATGCGACGCGCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTCGGGGATACGTGCCTACCCCGTGCTTTGGGGGATGCGACGCGCA  599

seq1  CTCCCGGGTCACAGGGGCCCGAGTCCATGCTCCTCCGGCCTCCGTTCCGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGGGTCACAGGGGCCCGAGTCCATGCTCCTCCGGCCTCCGTTCCGT  649

seq1  ATGACCTATCGCCTACCCGGCTCCCGCCAGCACTCACCACCGCCGCTCCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTATCGCCTACCCGGCTCCCGCCAGCACTCACCACCGCCGCTCCC  699

seq1  CATCGCCGAGCTCCCTCCACTGCCGCTTTAGACCGCTCTCAAGCGCGCCC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCCGAGCTCCCTCCACTGCCGCTTTAGACCGCTCTCAAGCGCGCCC  749

seq1  GCGCCTGGGGCAAGTGCACGGAGCGCCTCACGCAGGCGCGGGCCCCACCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGGGGCAAGTGCACGGAGCGCCTCACGCAGGCGCGGGCCCCACCC  799

seq1  CCGCCCCGTTTTCAAACGCGCCGGGAGCTCCTACTGGTAGGACCACAGAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCGTTTTCAAACGCGCCGGGAGCTCCTACTGGTAGGACCACAGAG  849

seq1  TTACGCCCCCCAGATCACTAGCCTCTCCTGCCCCGCAGGCTCTGGGCATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCCCCCCAGATCACTAGCCTCTCCTGCCCCGCAGGCTCTGGGCATT  899

seq1  TGTGATTGGCTACACCAGGACG  915
      ||||||||||||||||||||||
seq2  TGTGATTGGCTACACCAGGACG  921

seq1: chr17_24249418_24250514
seq2: B6Ng01-303E24.g_64_1160

seq1  GAATTCAGCATACCCAAGTTACTTAGGTGCTAGTCTCTAACAGTCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATACCCAAGTTACTTAGGTGCTAGTCTCTAACAGTCCTCCT  50

seq1  CACTCAAGAACTCCAGAAAACTTCTATAGCTCAGTTCTAGAATGCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGAACTCCAGAAAACTTCTATAGCTCAGTTCTAGAATGCTTGCC  100

seq1  TAGAATACATGAGAACCTGGGTTCAATTCCCAGCATACCCAAAAGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATACATGAGAACCTGGGTTCAATTCCCAGCATACCCAAAAGAAAAT  150

seq1  TTAAAAGTACACAACTTGATGGTCCTGAAATCACAGTATCTCTTAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTACACAACTTGATGGTCCTGAAATCACAGTATCTCTTAAACCA  200

seq1  CCCACCTGTTCTGTAAAATAGTACATTAAGGTTGCCACTGACCAAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGTTCTGTAAAATAGTACATTAAGGTTGCCACTGACCAAAAGGT  250

seq1  GACCCATTCAAAAACTACAGCAGACTGCTCAGAAAAAATAAGCTAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATTCAAAAACTACAGCAGACTGCTCAGAAAAAATAAGCTAAATCT  300

seq1  AAGAAAAGGCCATGAGTCCACATGTTACAAAATAAGGTGGGTTGCTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGCCATGAGTCCACATGTTACAAAATAAGGTGGGTTGCTTCTT  350

seq1  TCTTCCTTCTTTCTTCCTCTTTCCTCCTTTTTCTCCTCCTCCTTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTTTCTTCCTCTTTCCTCCTTTTTCTCCTCCTCCTTTTCTTT  400

seq1  AGCCTAACAATAAACTCTATGGGCTAAGTAGACTGGTTAATTTATGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAACAATAAACTCTATGGGCTAAGTAGACTGGTTAATTTATGTAAA  450

seq1  CATGGCAGTATGTTTGTGTATGATTTAACTAAGACAGACAAGGATGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGTATGTTTGTGTATGATTTAACTAAGACAGACAAGGATGACTG  500

seq1  CTTTCTTGATAAACAGAGACAGAAACACAGAACCATAAAGAAGCCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGATAAACAGAGACAGAAACACAGAACCATAAAGAAGCCAGGGC  550

seq1  TCTGGAAACACAGTAGGACAGGTGTGCACACAGTAGCCAAGCGTGAGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAACACAGTAGGACAGGTGTGCACACAGTAGCCAAGCGTGAGCAA  600

seq1  AGGAAAGCTTAGCCACCAAGAAGAGCTAAAGGAGTTGCTCATCTTAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCTTAGCCACCAAGAAGAGCTAAAGGAGTTGCTCATCTTAAGAT  650

seq1  TGCAAAATGCTTAAAAAATCTAGACAGAACATCTTGTGACCCAAACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATGCTTAAAAAATCTAGACAGAACATCTTGTGACCCAAACATAA  700

seq1  TGAGTACGGAGACAGTGGAGAAGGGAGAGCAGATGGTAACACGGGAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACGGAGACAGTGGAGAAGGGAGAGCAGATGGTAACACGGGAGGGT  750

seq1  GTCTTGCCTACCCCACAGTGCAGTATGTGAACCTGGGCTCCTGAGAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCCTACCCCACAGTGCAGTATGTGAACCTGGGCTCCTGAGAGCAG  800

seq1  ACTCCCTGGAAGGCCAGAGGAGCAGCAGCACACTTCTAGATAAGCAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTGGAAGGCCAGAGGAGCAGCAGCACACTTCTAGATAAGCAACCA  850

seq1  CTATCAGTAACCCTGTACCTGCTCTGTGGCAGAAGGAAAGGGCTTTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTAACCCTGTACCTGCTCTGTGGCAGAAGGAAAGGGCTTTTCTT  900

seq1  TCAGGTGGGTTTGTTGGATCTATCATCATGCTAGGCAAAGCATAAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCAGGTGGGTTTGTTGGATCTATCATCATGCTAGGCAAAGCAT-AAAATA  949

seq1  TG-AAGGTGCTGCCGGGCATGGTGGTGCACTCCTTTAATCCCAGCACTCG  999
      || |||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAAAGGTGCTGCCGGGCATGGTGGTGCACTCC-TTAATCCCAGCACTCG  998

seq1  GGAGGCAGAGAT-AGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTC-TAC  1047
      |||||||||||| ||||||||||||||||| |||| |||||||||| |||
seq2  GGAGGCAGAGATAAGGCAGATTTCTGAGTTGGAGG-CAGCCTGGTCTTAC  1047

seq1  AGAGT-GAGTTCCAGG-ACAGCCAGGGCTATACAGAGAAACCCTGTCTCG  1095
        ||| |||||||||| |||||||||   |||| |||||| |||||||||
seq2  GAAGTGGAGTTCCAGGAACAGCCAGGCTAATAC-GAGAAA-CCTGTCTCG  1095

seq1  AA  1097
      ||
seq2  AA  1097