BAC Information

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BAC

Clone NameB6Ng01-303H09
Chromosome17 (Build37)
Map Location 14,784,206 - 14,785,327
singlet/doubletsinglet
Overlap genenone
Upstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856
Downstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303H09.bB6Ng01-303H09.g
ACCGA097256GA097257
length1,1881,116
definitionB6Ng01-303H09.b B6Ng01-303H09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacatgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggtttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacaaaatgtactcactgataagtggatattagcccaaaaccta
ggatacccaagatataagatacaatttcctaaacacatgaaactcaagaa
aaatgaagactgaagtgtggacactatgcccctccttagaagtgggaaca
aaacacccttggaaggagttacagagacaaagtttggagctgagatgaaa
ggatggaccatgtagggactgccttatccagggatccaccccataatcag
catccaaacgctgacaccattgcatacactagcaagattttatcgaaagg
acccagatgtagctgtctcttgtgagactatgccggggcctagcaaacac
agaagtggatgcccacagtcagctaatggatggattacagggcctcccaa
ttggaggagctagagaaagtacccaagggagctaaaggaatctgcaaccc
tataaggtggatcacattattgaactaaccagtaccccggagcttcttga
ctctagctgcatatgttattcaaaagatgggcctagtcgtcaattcactg
ggtaaggaagggcccaattgacaccaaccttatatgcctgaatgtaacgt
catgctaaaggggaatgtcggctaggggaaaagtggtg
gaattcattcctcgtgtcctacaaggaaaacatctggggcccgtggagac
ggctcggtcagtaacgcattgccatgtgagcacgagaacctgtgttccga
tccaagtatccttgtaaacctgagtgtgttaacacacctgtaatcacagc
cccagaatccattagggacactagagcttgctagccagcttgtcttgctg
aattgctgagcacaaagttcagcgagagactgtctcaaaaagtgaggagg
agaacactcggcttccagcacacacaagcatgtacacacagagatctata
agtacacacatgcatacatgcacacacacacacacacacacacacacaca
gagagagagagagagagagagagagagagagagagagagagagagagatg
tgaataatccaatcctgaaagtgggagtgtttgcttcggatactccctga
gagtaaaattaggaaacattaaatgtaatggaggcggatagcctttacct
atctacagaaggcctgcacactgagctgaaggctcccggcatgccttcct
cctatttaattcaaaccctgatgaacatcaggtcttctgaatagtggcac
agtcactatacaataaacaatgccaagaattcatgatttttttccagcca
gctctgtctgccctcttccttccatttctaccctaattctttaatttaaa
ttctgctagaactctgttaaagcaaaggtcattcctgctgagcagggacg
gccctccagggctgcatcatactctctgttcactccttattgtgtttctg
gagcatggaattattgcctctacatattttgtggatgtcttaaatatggc
attgcgggtcaactttatggatcagttccatgtgcaaagcccttatttcc
aggaacattcacagagagtcagtttcgttgtcataggaatgttgaataat
ctctgggtcccatgtctcatcctttctcatgctagctataatgtgttttt
cttagccagtccttctagcattgcaatggttccctgagacagtgaacctt
ttggtacgtggccagatctccttgcagatttatccatcatatgtcctggg
gtagtgcctgcctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14784206_14785327
seq2: B6Ng01-303H09.g_66_1181

seq1  GAATTCATTCCTCGTGTCCTACAAGGAAAACATCTGGGGCCCGTGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTCGTGTCCTACAAGGAAAACATCTGGGGCCCGTGGAGAC  50

seq1  GGCTCGGTCAGTAACGCATTGCCATGTGAGCACGAGAACCTGTGTTCCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGGTCAGTAACGCATTGCCATGTGAGCACGAGAACCTGTGTTCCGA  100

seq1  TCCAAGTATCCTTGTAAACCTGAGTGTGTTAACACACCTGTAATCACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTATCCTTGTAAACCTGAGTGTGTTAACACACCTGTAATCACAGC  150

seq1  CCCAGAATCCATTAGGGACACTAGAGCTTGCTAGCCAGCTTGTCTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATCCATTAGGGACACTAGAGCTTGCTAGCCAGCTTGTCTTGCTG  200

seq1  AATTGCTGAGCACAAAGTTCAGCGAGAGACTGTCTCAAAAAGTGAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGAGCACAAAGTTCAGCGAGAGACTGTCTCAAAAAGTGAGGAGG  250

seq1  AGAACACTCGGCTTCCAGCACACACAAGCATGTACACACAGAGATCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTCGGCTTCCAGCACACACAAGCATGTACACACAGAGATCTATA  300

seq1  AGTACACACATGCATACATGCACACACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACACATGCATACATGCACACACACACACACACACACACACACACA  350

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATG  400

seq1  TGAATAATCCAATCCTGAAAGTGGGAGTGTTTGCTTCGGATACTCCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATCCAATCCTGAAAGTGGGAGTGTTTGCTTCGGATACTCCCTGA  450

seq1  GAGTAAAATTAGGAAACATTAAATGTAATGGAGGCGGATAGCCTTTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAATTAGGAAACATTAAATGTAATGGAGGCGGATAGCCTTTACCT  500

seq1  ATCTACAGAAGGCCTGCACACTGAGCTGAAGGCTCCCGGCATGCCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGAAGGCCTGCACACTGAGCTGAAGGCTCCCGGCATGCCTTCCT  550

seq1  CCTATTTAATTCAAACCCTGATGAACATCAGGTCTTCTGAATAGTGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTAATTCAAACCCTGATGAACATCAGGTCTTCTGAATAGTGGCAC  600

seq1  AGTCACTATACAATAAACAATGCCAAGAATTCATGATTTTTTTCCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTATACAATAAACAATGCCAAGAATTCATGATTTTTTTCCAGCCA  650

seq1  GCTCTGTCTGCCCTCTTCCTTCCATTTCTACCCTAATTCTTTAATTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTGCCCTCTTCCTTCCATTTCTACCCTAATTCTTTAATTTAAA  700

seq1  TTCTGCTAGAACTCTGTTAAAGCAAAGGTCATTCCTGCTGAGCAGGGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAGAACTCTGTTAAAGCAAAGGTCATTCCTGCTGAGCAGGGACG  750

seq1  GCCCTCCAGGGCTGCATCATACTCTCTGTTCACTCCTTATTGTGTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCAGGGCTGCATCATACTCTCTGTTCACTCCTTATTGTGTTTCTG  800

seq1  GAGCATGGAATTATTGCCTCTACATATTTTGTGGATGTCTTAAATATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGAATTATTGCCTCTACATATTTTGTGGATGTCTTAAATATGGC  850

seq1  ATTGCGGGTCAACTTTATGGATCAGTTCCATGTGCAAAG-CCTTATTTCC  899
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  ATTGCGGGTCAACTTTATGGATCAGTTCCATGTGCAAAGCCCTTATTT-C  899

seq1  CAGGAACATTCACAGAGAGTCAGTTTCGTTGTCATAGGAATGTTGAATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATTCACAGAGAGTCAGTTTCGTTGTCATAGGAATGTTGAATAA  949

seq1  TCTCTGGGTCCCATGTCTCATCCTTTCTCATGCTAGCTATTAAATGTG-T  998
      ||||||||||||||||||||||||||||||||||||||||  |||||| |
seq2  TCTCTGGGTCCCATGTCTCATCCTTTCTCATGCTAGCTAT--AATGTGTT  997

seq1  TTTCTTAGCAAATTCCTTCTAGCATGCAAATGGTCCCTGGAGACAGTGAA  1048
      |||||||||  | ||||||||||||   |||||| ||  |||||||||||
seq2  TTTCTTAGC-CAGTCCTTCTAGCATTGCAATGGTTCCCTGAGACAGTGAA  1046

seq1  CTTTTGGGTACGTGGCCCAGATTCTCC-TGCAGATTTATCCCTCCATATG  1097
      | ||| ||||||||| ||||| ||||| ||||||||||||| | ||||||
seq2  CCTTTTGGTACGTGG-CCAGA-TCTCCTTGCAGATTTATCCAT-CATATG  1093

seq1  GTTCTGGGGGTAGTTGCTGCCTGGG  1122
        ||  ||||||||  |||||||||
seq2  --TCCTGGGGTAGTGCCTGCCTGGG  1116