BAC Information

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BAC

Clone NameB6Ng01-304K13
Chromosome17 (Build37)
Map Location 82,216,508 - 82,217,630
singlet/doubletsinglet
Overlap genenone
Upstream geneC230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1, EG668832
Downstream geneLOC100043707, LOC625467, LOC668836, EG433141, EG625514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304K13.bB6Ng01-304K13.g
ACCGA098159GA098160
length1,1801,121
definitionB6Ng01-304K13.b B6Ng01-304K13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacataataaaagcaatatacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atacagggactagacaaggctgcccactttctccctacctattcaatata
gtacttgaagtcctagccagagcaatttgacaacaaaaggagatcaaggg
gatacaaattggaaaggaaaaagtcaaaatatcactatttgcagatgata
tgatactatatataagtgaccctaaaaattccaccagagaactcctaaac
ctgataaacagcttcagcacagtagctggatataaaattaactcaaacaa
atgagtggcctttctctacacaaaggataaacaggatgagaaagaaatta
gggaaacaacacccatcacaatagccacaaataatataaaataccttggt
gtgactctaattaaggaattgaaagatctgtatgacaagaacttcaagtc
tctgtagaaaggaattgaagaagatggaaagatctcccatgctcatggat
tggcaggattaatatagtcaaaacagctatcctgccgaaagcaatctata
gattcaatgcaatccccatcaaaattccaaatcaattcttcattgaggta
gaaatggaaatttgcaaattcatctggaataacaaaaaacctaggatagc
aaaaactattctcaacaataaaagaacctctggaagaatcacctctcctg
acctcaagttgtactatagagcaattgtgataaaaactgcatgttactga
tacagcaacagacaggtagatcaatggaatagaattgaagactcagaaat
taacccacattcctatggtcacttgatctttgataaagaagctaaaacca
ttcagtggaaaaaagacagcattttcaacaatggtgctggcacaactggc
ggttatcatgtagagatgcaaatgatccattctatctctgtacaaagctc
aagtctagtgggtcaaagaactcacataatacagagacactgaaattata
gaggagaaagtggggaagtctgaagattggccacaggaaaaatctaacag
aaagcaatggcctggccttagatcagaatgcaatggaccttggaactgca
agctctgtgcacaaagattccgttccatag
gaattcaatgtacttggaggaaacagggaaagaggataataagcaagaac
aataaaatggaagaaactttaaacacacagaaacatccctgtgcatttaa
cagtagttaagttatcgctttcaaaagaatgctcctgacttaataagata
gaaattgagttatttttctcatatgctaaatgaactgttctttttatata
aaaatcattggaagctatgagtaaaattaaatctagtgctagtaggacat
caaaataggttaaacgtaagttttaaaagcatcaactaagtattataatg
ataaatgcagataaaggatctttgtttttgcataaaaatttcttgattta
tagatacagttcctattcctggaaaagtacataaattatatatatgtgtg
ttaattgaaacaatgagagctactgttggcggcacattggaacacttagt
gaaattaacctctgaatacatgtcatacatgtcttaattcagagtaaatg
attttgcttacaatattgcttttcttcattattacatgaagtggtattta
ctcacaacttacaactgttattgaaatctgcttatctaatatgtcattca
aaaatataagattttctttttcttttcttttttcatgtgctttctacttt
atttttcatgtattatttcttttttttaataatgtaaatagttttaaaaa
tttttttacactccatatttcctaccctgctgccccaaccacccttcaac
tgctccatatctcatatctctgccccaccacaccccttctccacgtggat
gcccccaccccccaccccacctgacctctaaactccctggggcctcccat
ctcttgagggttaggcgcatcatgtctgaatgaacacagacccggaagtc
ctctactgtatgtgtgttgggggcctcataccagctggtgtatgctgtct
gtttagtgggtccagtgttgagagatctcgggatccaaggttaaattgag
actgctggttatttctacaggatcgctctctcctcagcttcttttacctt
ccctaatcaacaacagtggtcagctgctctgtccattgggtgggtgcaat
ctctgccatctgactctttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82216508_82217630
seq2: B6Ng01-304K13.g_68_1188

seq1  GAATTCAATGTACTTGGAGGAAACAGGGAAAGAGGATAATAAGCAAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTACTTGGAGGAAACAGGGAAAGAGGATAATAAGCAAGAAC  50

seq1  AATAAAATGGAAGAAACTTTAAACACACAGAAACATCCCTGTGCATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGGAAGAAACTTTAAACACACAGAAACATCCCTGTGCATTTAA  100

seq1  CAGTAGTTAAGTTATCGCTTTCAAAAGAATGCTCCTGACTTAATAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTAAGTTATCGCTTTCAAAAGAATGCTCCTGACTTAATAAGATA  150

seq1  GAAATTGAGTTATTTTTCTCATATGCTAAATGAACTGTTCTTTTTATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAGTTATTTTTCTCATATGCTAAATGAACTGTTCTTTTTATATA  200

seq1  AAAATCATTGGAAGCTATGAGTAAAATTAAATCTAGTGCTAGTAGGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTGGAAGCTATGAGTAAAATTAAATCTAGTGCTAGTAGGACAT  250

seq1  CAAAATAGGTTAAACGTAAGTTTTAAAAGCATCAACTAAGTATTATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGGTTAAACGTAAGTTTTAAAAGCATCAACTAAGTATTATAATG  300

seq1  ATAAATGCAGATAAAGGATCTTTGTTTTTGCATAAAAATTTCTTGATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCAGATAAAGGATCTTTGTTTTTGCATAAAAATTTCTTGATTTA  350

seq1  TAGATACAGTTCCTATTCCTGGAAAAGTACATAAATTATATATATGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACAGTTCCTATTCCTGGAAAAGTACATAAATTATATATATGTGTG  400

seq1  TTAATTGAAACAATGAGAGCTACTGTTGGCGGCACATTGGAACACTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAAACAATGAGAGCTACTGTTGGCGGCACATTGGAACACTTAGT  450

seq1  GAAATTAACCTCTGAATACATGTCATACATGTCTTAATTCAGAGTAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAACCTCTGAATACATGTCATACATGTCTTAATTCAGAGTAAATG  500

seq1  ATTTTGCTTACAATATTGCTTTTCTTCATTATTACATGAAGTGGTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTACAATATTGCTTTTCTTCATTATTACATGAAGTGGTATTTA  550

seq1  CTCACAACTTACAACTGTTATTGAAATCTGCTTATCTAATATGTCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACTTACAACTGTTATTGAAATCTGCTTATCTAATATGTCATTCA  600

seq1  AAAATATAAGATTTTCTTTTTCTTTTCTTTTTTCATGTGCTTTCTACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAGATTTTCTTTTTCTTTTCTTTTTTCATGTGCTTTCTACTTT  650

seq1  ATTTTTCATGTATTATTTCTTTTTTTTAATAATGTAAATAGTTTTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATGTATTATTTCTTTTTTTTAATAATGTAAATAGTTTTAAAAA  700

seq1  TTTTTTTACACTCCATATTTCCTACCCTGCTGCCCCAACCACCCTTCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTACACTCCATATTTCCTACCCTGCTGCCCCAACCACCCTTCAAC  750

seq1  TGCTCCATATCTCATATCTCTGCCCCACCACACCCCTTCTCCACGTGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATATCTCATATCTCTGCCCCACCACACCCCTTCTCCACGTGGAT  800

seq1  GCCCCCACCCCCCACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACCCCCCACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCCAT  850

seq1  CTCTTGAGGGTTAGGCGCATCATGTCTGAATGAACACAGACCCGGAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGGGTTAGGCGCATCATGTCTGAATGAACACAGACCCGGAAGTC  900

seq1  CTCTACTGTATGTGTGTTGGGGGCCTCATACCAGCTGGTGTATGCTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGTATGTGTGTTGGGGGCCTCATACCAGCTGGTGTATGCTGTCT  950

seq1  GTTTAGT-GGTCCAGTGTTTGAGAGATCTCGGGGATCC-AGGTT-AATTG  997
      ||||||| ||||||||| |||||||||||| ||||||| ||||| |||||
seq2  GTTTAGTGGGTCCAGTG-TTGAGAGATCTC-GGGATCCAAGGTTAAATTG  998

seq1  AGACTGCTGG-TATTTCTACAGGATCGCTCTTCTCCTCAGCTTCTTTTAA  1046
      |||||||||| ||||||||||||||||||| ||||||||||||||||| |
seq2  AGACTGCTGGTTATTTCTACAGGATCGCTC-TCTCCTCAGCTTCTTTT-A  1046

seq1  CCTTCCCTAATTCAACAACAGTGGTCAGCTGCTTCTGTCCATTGGTTGGG  1096
      |||||||||| ||||||||||||||||||||| |||||||||||| ||||
seq2  CCTTCCCTAA-TCAACAACAGTGGTCAGCTGC-TCTGTCCATTGGGTGGG  1094

seq1  TGCAAATCTCTG-CATCTGACTCTTTCA  1123
      ||| |||||||| |||||||||||||||
seq2  TGC-AATCTCTGCCATCTGACTCTTTCA  1121