BAC Information

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BAC

Clone NameB6Ng01-304M18
Chromosome17 (Build37)
Map Location 79,170,637 - 79,345,249
singlet/doubletdoublet
Overlap geneHeatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn
Downstream genePrkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304M18.bB6Ng01-304M18.g
ACCGA098252GA098253
length1,0991,085
definitionB6Ng01-304M18.b B6Ng01-304M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,170,637 - 79,171,738)(79,344,194 - 79,345,249)
sequence
gaattctttcagggaacttcaggaggtgagaaaagacagcccaaatggga
aactacaaagagcatgaggatgatgtgagggctcaggaggggataactga
cagcagagagctagctttgaactgcctgctgctttcaagtgcctgcctgc
tatctactctttcctccaagtttccactcaaacatgacttgctccaaaat
ttgcagcccgggcctccagactagcttagtgccctgccctgcttcaaagc
tctaggtttcccctgtggtagctctctttcctttcggtcacatcttctag
ttctgagtttgtcttgctaagtaaatagagcacatctgccttgttctaaa
acttgcctaagtaagtaatatccaatgtcacacagttcacataaacctaa
agatttggaagcgttggcaaacaaactctctaagtgaaaaagcagaggta
aaacttagtccagcatgtcagacctaggacatgctggagtaagtctgagt
ggacagactaggacatgctggagtaagtctgagtggacagactaggacat
gctggagtaagtctgagtgggcagactaggacatgctggagtaagtctga
gaggacagactaggacatgctggagtaagtctgagaggacagactagggt
atgctggagtaagtctgagaggacagactaggacatgctggagtaagtct
gagtggacggacctaggatatgctagcacctgagaaagtgataaaagaaa
tgaagtgaagtggtgtaacaattcccagtcagcaggaaaaactaagcctg
aggtacaaatagctaaacaataatacatattacccccaactacaaaagaa
ctccaaatgaatgcacactactaattctgttatgtggcattctgacctac
tttttttttttttaaagattcattcatttgtcatatgtaagtacactgta
actgttttcacacactccagaagaggggagtcagatctgtaagatggttg
tgagctaccatgtggttgctgggaatttgactctggacttcagaagagta
gtcggtgctcttactcactgagtcatcctcacagcccctgaccttattt
gaattccattttggtttggttggtttccatttcacagtttctctgtgtag
ccctagctgtcctggagctcactagaccaggctgatctcagaaatccgcc
tgcctctgctcccaagtgctggagcagagcaccaccacacagcaaaaatt
cctagcagtaataaagttagaaagaaccaatgagccaggtgtcttggcac
aggcctttaatcccagcactcgggaggcagaggcaggtggatttctgagt
tcgaggccagcctggtctacaaagtgggttccaggacagccagggctata
cagagaaaccctgtctcgaaaaatcaaaaaaaaaagaaaagaaagaaaga
aagaaagaacgaatgaacgaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaacgaaccaatgatcta
gaaaacaatgtttaggaaggtaaaagaaaatatctggaaagaaaaatatg
ttaaaacaatttgcagtagctaggttgaacatgcaaagtagctttctttt
tttttaaatgaaggcagggttgaaacattaatgtgaaaagactctttcca
aaattttatattattccaatgcttcctaggctcgatgccaatccaggctc
tgtgctaagaatgactgtaagatctgaaataatgggtagttaaaacagca
taattaacatttaattttaaaaaaatgaatgcaacaaaattagataccat
aaaagctaagctaagatcttacaaagagatgctgataaagccttgccctg
tatgacacatactgacacatactctcaaggagtctgtctttgtgccatcg
tgaccgtaatccgcaatcagggctgcaccttccagttgacgcaatgcgct
gggacagtttcttggatgataacccccagcatcggggacatactttccac
atggttcccctccttttcatccacggctgggtaaagggaagaggttaggt
taggacctccactggcttcacttccacaggaggctggccttcctttaggg
ttcctcacacacatttccacagggtgaacaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79170637_79171738
seq2: B6Ng01-304M18.b_48_1146

seq1  GAATTCTTTCAGGGAACTTCAGGAGGTGAGAAAAGACAGCCCAAATGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGGGAACTTCAGGAGGTGAGAAAAGACAGCCCAAATGGGA  50

seq1  AACTACAAAGAGCATGAGGATGATGTGAGGGCTCAGGAGGGGATAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAAAGAGCATGAGGATGATGTGAGGGCTCAGGAGGGGATAACTGA  100

seq1  CAGCAGAGAGCTAGCTTTGAACTGCCTGCTGCTTTCAAGTGCCTGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGAGCTAGCTTTGAACTGCCTGCTGCTTTCAAGTGCCTGCCTGC  150

seq1  TATCTACTCTTTCCTCCAAGTTTCCACTCAAACATGACTTGCTCCAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTCTTTCCTCCAAGTTTCCACTCAAACATGACTTGCTCCAAAAT  200

seq1  TTGCAGCCCGGGCCTCCAGACTAGCTTAGTGCCCTGCCCTGCTTCAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCCGGGCCTCCAGACTAGCTTAGTGCCCTGCCCTGCTTCAAAGC  250

seq1  TCTAGGTTTCCCCTGTGGTAGCTCTCTTTCCTTTCGGTCACATCTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTTCCCCTGTGGTAGCTCTCTTTCCTTTCGGTCACATCTTCTAG  300

seq1  TTCTGAGTTTGTCTTGCTAAGTAAATAGAGCACATCTGCCTTGTTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTGTCTTGCTAAGTAAATAGAGCACATCTGCCTTGTTCTAAA  350

seq1  ACTTGCCTAAGTAAGTAATATCCAATGTCACACAGTTCACATAAACCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTAAGTAAGTAATATCCAATGTCACACAGTTCACATAAACCTAA  400

seq1  AGATTTGGAAGCGTTGGCAAACAAACTCTCTAAGTGAAAAAGCAGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGAAGCGTTGGCAAACAAACTCTCTAAGTGAAAAAGCAGAGGTA  450

seq1  AAACTTAGTCCAGCATGTCAGACCTAGGACATGCTGGAGTAAGTCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGTCCAGCATGTCAGACCTAGGACATGCTGGAGTAAGTCTGAGT  500

seq1  GGACAGACTAGGACATGCTGGAGTAAGTCTGAGTGGACAGACTAGGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACTAGGACATGCTGGAGTAAGTCTGAGTGGACAGACTAGGACAT  550

seq1  GCTGGAGTAAGTCTGAGTGGGCAGACTAGGACATGCTGGAGTAAGTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTAAGTCTGAGTGGGCAGACTAGGACATGCTGGAGTAAGTCTGA  600

seq1  GAGGACAGACTAGGACATGCTGGAGTAAGTCTGAGAGGACAGACTAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGACTAGGACATGCTGGAGTAAGTCTGAGAGGACAGACTAGGGT  650

seq1  ATGCTGGAGTAAGTCTGAGAGGACAGACTAGGACATGCTGGAGTAAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAGTAAGTCTGAGAGGACAGACTAGGACATGCTGGAGTAAGTCT  700

seq1  GAGTGGACGGACCTAGGATATGCTAGCACCTGAGAAAGTGATAAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGACGGACCTAGGATATGCTAGCACCTGAGAAAGTGATAAAAGAAA  750

seq1  TGAAGTGAAGTGGTGTAACAATTCCCAGTCAGCAGGAAAAACTAAGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGAAGTGGTGTAACAATTCCCAGTCAGCAGGAAAAACTAAGCCTG  800

seq1  AGGTACAAATAGCTAAACAATAATACATATTACCCCCAACTACAAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAATAGCTAAACAATAATACATATTACCCCCAACTACAAAAGAA  850

seq1  CTCCAAATGAATGCACACTACTAATTCTGTTATGTGGCATTCTGACCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATGAATGCACACTACTAATTCTGTTATGTGGCATTCTGACCTAC  900

seq1  -TTTTTTTTTTTTAAAGATTCATTCATTTGTCATATGTAAGTACACTGTA  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAAAGATTCATTCATTTGTCATATGTAAGTACACTGTA  950

seq1  ACTGTTTTCACACACTCCAGAAGA-GGGAGTCAGATCTTGTTAAAGATGG  998
      |||||||||||||||||||||||| |||||||||||| |||  |||||||
seq2  ACTGTTTTCACACACTCCAGAAGAGGGGAGTCAGATC-TGT--AAGATGG  997

seq1  TTGTGAGCTACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCAGAAG  1048
      ||||||||||||||||||||||||||| ||  |||||||| |||||||||
seq2  TTGTGAGCTACCATGTGGTTGCTGGGAATTTGACTCTGGA-CTTCAGAAG  1046

seq1  AGTAGTCGGGTGCTCTTACCCACTGAGCCAT-CTCACCAGCCCCTGACCT  1097
      ||||||| ||||||||||| ||||||| ||| |||| |||||||||||||
seq2  AGTAGTC-GGTGCTCTTACTCACTGAGTCATCCTCA-CAGCCCCTGACCT  1094

seq1  AATTT  1102
       ||||
seq2  TATTT  1099

seq1: chr17_79344194_79345249
seq2: B6Ng01-304M18.g_68_1152 (reverse)

seq1  -AAAATGTTCA--CTGTGGAAATGTGTGAG----ACCCT-AAGGA--GGC  40
       ||| ||||||  ||||||||||||||| |    ||||| |||||  | |
seq2  AAAATTGTTCACCCTGTGGAAATGTGTGTGAGGAACCCTAAAGGAAGGCC  50

seq1  AG-CTCTTGTG--AGTGA--GCAGT-GAG--TCTAA-CTAA-CTCTTCCC  80
      || ||| ||||  |||||   |||| |||   |||| |||| ||||||||
seq2  AGCCTCCTGTGGAAGTGAAGCCAGTGGAGGTCCTAACCTAACCTCTTCCC  100

seq1  TT--ACCAG-CGT-GATG-AAAGGAGGG--AACATGTGG-AAGTATGT-C  121
      ||   |||| ||| |||| |||||||||  | ||||||| |||||||| |
seq2  TTTACCCAGCCGTGGATGAAAAGGAGGGGAACCATGTGGAAAGTATGTCC  150

seq1  CCGATGCT-GGGGTTATCATCCAAG-AACTGTCCCAGCGCATTGCGTCAA  169
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  CCGATGCTGGGGGTTATCATCCAAGAAACTGTCCCAGCGCATTGCGTCAA  200

seq1  CTGG-AGGTGCAGCCCTGATTGCGGATTACGGTCACGATGGCACAAAGAC  218
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGTGCAGCCCTGATTGCGGATTACGGTCACGATGGCACAAAGAC  250

seq1  AGACACCTTGAGAGTATGTGTCAGTATGTGTCATACAGGGC-AGGCTTTA  267
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACTCCTTGAGAGTATGTGTCAGTATGTGTCATACAGGGCAAGGCTTTA  300

seq1  TCAGCATCTCTTTGTAAGATCTTAGCTTAGCTTTTATGGTATCTAATTTT  317
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCTCTTTGTAAGATCTTAGCTTAGCTTTTATGGTATCTAATTTT  350

seq1  GTTGCATTCATTTTTTTAAAATTAAATGTTAATTATGCTGTTTTAACTAC  367
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTCATTTTTTTAAAATTAAATGTTAATTATGCTGTTTTAACTAC  400

seq1  CCATTATTTCAGATCTTACAGTCATTCTTAGCACAGAGCCTGGATTGGCA  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTTCAGATCTTACAGTCATTCTTAGCACAGAGCCTGGATTGGCA  450

seq1  TCGAGCCTAGGAAGCATTGGAATAATATAAAATTTTGGAAAGAGTCTTTT  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCCTAGGAAGCATTGGAATAATATAAAATTTTGGAAAGAGTCTTTT  500

seq1  CACATTAATGTTTCAACCCTGCCTTCATTTAAAAAAAAAGAAAGCTACTT  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAATGTTTCAACCCTGCCTTCATTTAAAAAAAAAGAAAGCTACTT  550

seq1  TGCATGTTCAACCTAGCTACTGCAAATTGTTTTAACATATTTTTCTTTCC  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTCAACCTAGCTACTGCAAATTGTTTTAACATATTTTTCTTTCC  600

seq1  AGATATTTTCTTTTACCTTCCTAAACATTGTTTTCTAGATCATTGGTTCG  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTTCTTTTACCTTCCTAAACATTGTTTTCTAGATCATTGGTTCG  650

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  667
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ----TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  696

seq1  CTTTCTTTCTTTCTTTCTTTCGTTCATTCGTTCTTTCTTTCTTTCTTTCT  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCGTTCATTCGTTCTTTCTTTCTTTCTTTCT  746

seq1  TTTCTTTTTTTTTTGATTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGG  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTTTGATTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGG  796

seq1  CTGTCCTGGAACCCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACCCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  846

seq1  CACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCCTGTGCCAAGACA  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCCTGTGCCAAGACA  896

seq1  CCTGGCTCATTGGTTCTTTCTAACTTTATTACTGCTAGGAATTTTTGCTG  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCATTGGTTCTTTCTAACTTTATTACTGCTAGGAATTTTTGCTG  946

seq1  TGTGGTGGTGCTCTGCTCCAGCACTTGGGAGCAGAGGCAGGCGGATTTCT  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGTGCTCTGCTCCAGCACTTGGGAGCAGAGGCAGGCGGATTTCT  996

seq1  GAGATCAGCCTGGTCTAGTGAGCTCCAGGACAGCTAGGGCTACACAGAGA  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGCCTGGTCTAGTGAGCTCCAGGACAGCTAGGGCTACACAGAGA  1046

seq1  AACTGTGAAATGGAAACCAACCAAACCAAAATGGAATTC  1056
      |||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGAAATGGAAACCAACCAAACCAAAATGGAATTC  1085