BAC Information

Click to search

BAC

Clone NameB6Ng01-305H16
Chromosome17 (Build37)
Map Location 13,736,026 - 13,736,761
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a
Downstream geneTcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305H16.bB6Ng01-305H16.g
ACCGA098759GA098760
length1,001781
definitionB6Ng01-305H16.b B6Ng01-305H16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaacttttcagctggggaacggcggtaacccgtaagtatagct
ttacaagataagtctgatcttgaactttctaacgaaattcaagacagtct
atcagaagtaaagtggaaaatgtttggccttgaattttttctaatgttag
gagcccttttgttccttttcacatgttatcaagtgattaagatagggctg
aaaattctagaggaaattcaggacaagctatcagaagtaaagcggggaga
gagagtaggaacaaagaggaaatatggtacacaaaataagtatacaggcc
tttccaagggtcttgaacccgaggaaaagttaaggttaggtaggaatacc
tggagagagattagaagaaaaagaggaaaaagggaaaagaagaaagatca
attagcggaggtctctaggagatactcgtcactagatgagctcagggagc
cagctcttagtagctctgaagcaggtgaagaatcctcctctgaggaaaca
gactgggaggaagaagcagcccattaccagccagctaattggtcaagaaa
aaagccaaaagcggctggcgaaggccagtttgctaattggcctcagggca
atcggctaccaggtgcactcccgccctatgcggagtccccgccctgcgta
gtgcgtcagcccgtagtgcgtcagcaatgcgcagagaggcagtgcgcaga
gaggcagtgcgcagactcattcattccccgagaggaacaaaggaaaatac
aacaggcatttccagtctttgaaggagccgagggtgggcgtgtccacgct
ccggtagaatatgtgcagattaaagaaattgccgagtcggttcgtaaata
cggaaccaatgctaattttaccttggtgcagttagacaggcttgccggca
atggcactaactcctgccgactggcaaatgattgcaaaagccgctctccc
taatatgggcaaaatatttggaatggagatctctgtggcgagaggctgca
c
gaattctgataaaattcccatatcactaaaggactgatgtttagaacact
gcacagggcaagacaggcaggagggcagggtggccagctctgttctatgg
tttctttagaaatagtgctttttattaaaacagcctcgtaaaattcattc
ctgattccttatctttcccacaagttctcattcctgtccacagccacctg
ggaattaacagaaaactcctgatggcttagcatcttcgaagagacttcct
cggggggggggggggcaacactgagaccaggatgtgtttctggaatcacc
cactccagtctctgcccttggcagtgcacagtcgtcccagcatctatgag
gtgtttcttgaagttttgtggggtgagttctgatggcttataggcagata
tgctttcaacattatatattcaaacttgctgggagacctagccatggact
gaggtatggtgactatccctgggaatcttaagctaaaggggtgtgtttct
ctgggtagcaccttaaacacacactccctccccaaataacagagttgcct
ggtttcatattcaatcacatactatcagaatgttgaaatgatgacatttt
aaaataataataataataataataataataataataataataatggggga
aatggatgatttgacaaaatttaatcgttactaatattcttcgcaatagg
atattagtgtgttttgtggtataatgccattggcacccttgaaataaaac
cgatttcaggcttcactaggcatgtaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_13736026_13736761
seq2: B6Ng01-305H16.g_67_847 (reverse)

seq1  TGTGTTACATGCCTCGTGAGACCTGAAATCGGTTTTATTTCAAGGTTGCC  50
      |||||||||||||| ||||  |||||||||||||||||||||||| ||||
seq2  TGTGTTACATGCCTAGTGAAGCCTGAAATCGGTTTTATTTCAAGGGTGCC  50

seq1  -ATGGCATTACACCAC-AAACACACTAAT-TCCTATTGCG-AGAATATTA  96
       ||||||||| ||||| |||||||||||| |||||||||| |||||||||
seq2  AATGGCATTATACCACAAAACACACTAATATCCTATTGCGAAGAATATTA  100

seq1  GTAACGGTTAAA-TTTGTCAAATCATCCATTTCCCC--------------  131
      |||||| ||||| |||||||||||||||||||||||              
seq2  GTAACGATTAAATTTTGTCAAATCATCCATTTCCCCCATTATTATTATTA  150

seq1  --------------ATGATTATTACTATTTTAAAATGTCATCATTTCAAC  167
                    || ||||||| |||||||||||||||||||||||||
seq2  TTATTATTATTATTATTATTATTATTATTTTAAAATGTCATCATTTCAAC  200

seq1  ATTCTGATAGTATGTGATTGAATATGAAACCAGGTGACTCTGTTATTTGG  217
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  ATTCTGATAGTATGTGATTGAATATGAAACCAGGCAACTCTGTTATTTGG  250

seq1  GGAGGGAGTGTGTGTTTAAGGTGCTACCCAGAGAAACACACCCCTTTAGC  267
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGTGTGTGTTTAAGGTGCTACCCAGAGAAACACACCCCTTTAGC  300

seq1  TTAAGATTCCCAGGGATAGTCACCATACCTCAGTCCATGGCTAGGTCTCC  317
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTCCCAGGGATAGTCACCATACCTCAGTCCATGGCTAGGTCTCC  350

seq1  CAGCAAGTCTGAATATATAATGTTGAAAGCATATCTGCCTATAAGCCATC  367
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTTTGAATATATAATGTTGAAAGCATATCTGCCTATAAGCCATC  400

seq1  AGAACTCACCCCACAAAACTTCAAGAAACACCTCGTAGATGCTGGGACGA  417
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAACTCACCCCACAAAACTTCAAGAAACACCTCATAGATGCTGGGACGA  450

seq1  CTGTGCACTGCCAA-----------GGAGTGGGTGATTCCAGAAACACAT  456
      ||||||||||||||           |||||||||||||||||||||||||
seq2  CTGTGCACTGCCAAGGGCAGAGACTGGAGTGGGTGATTCCAGAAACACAT  500

seq1  CCTGGTCTCAGTGTTGGCCCCCCCCCCCCC-AGGAAGTCTCTTCGAAGAT  505
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  CCTGGTCTCAGTGTTGCCCCCCCCCCCCCCGAGGAAGTCTCTTCGAAGAT  550

seq1  GCTAAGCCATCAGGAGTTTTCTGTTAATTCCCAGGTGGCTGTGGACAGGA  555
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCCATCAGGAGTTTTCTGTTAATTCCCAGGTGGCTGTGGACAGGA  600

seq1  ATGAGAACTTGTGGGAAAGATAAAGAATCAGGAATGAATTTTACGAGGCT  605
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGAGAACTTGTGGGAAAGATAAGGAATCAGGAATGAATTTTACGAGGCT  650

seq1  GTTTTAATAAAAAGCACTATTTCTAAAGAAACCATAGAACGGAGCTGGCC  655
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTTAATAAAAAGCACTATTTCTAAAGAAACCATAGAACAGAGCTGGCC  700

seq1  ACCCTGCCCTCCTGCCTGTCTTGCCCTGTGCAGTGTTCTAAACATCAGTC  705
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCCTCCTGCCTGTCTTGCCCTGTGCAGTGTTCTAAACATCAGTC  750

seq1  CTTTAGTGATATGGGAATTTTATCCGAATTC  736
      |||||||||||||||||||||||| ||||||
seq2  CTTTAGTGATATGGGAATTTTATCAGAATTC  781