BAC Information

Click to search

BAC

Clone NameB6Ng01-305M21
Chromosome17 (Build37)
Map Location 60,540,557 - 60,541,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043542
Downstream geneLOC100043549, LOC433129, EG620725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305M21.bB6Ng01-305M21.g
ACCGA099001GA099002
length1,2441,160
definitionB6Ng01-305M21.b B6Ng01-305M21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatttcttgagttctttatatatgttggatattagtccccta
tctgatttaggataggtaaagatcctttcccaatctgttggtggtctttt
tgtcttattgacggtgtcttttgctttgcagaagctttgcaattttatga
ggtcccatttatcgattctcgatcttatagcacaagccattgctgttcta
ttcaggaacttttcccctgtacccatatcttcgaggcctttccctacttt
ctcctctataagtttcagtgtctctggttttatgcggcattccttcatcc
acttagacttgagttttgtacaaggaggtaagaatggatcaattcacatt
cttctagatgctaactgccagttgagcaagcaccatttgttaaatgcagt
cttctttccactggatggttttagctcctttgtcaaggatcaagtgacca
taggtgtgtggcttcatttctgggtcttcagttctattccattgatctac
ctgtctgttgctataccagtaccatgcagtttttaccacaatttctctgt
agtacagcttgaggttggggatggtgattctaccagaggttcttttattg
ttgagaatagtttttgccattctaggttttttgctattccagatgaattt
gcagattgctctttctaattcgttgaagaattgagttggaattttggtgg
ggattgcactgaatctgtagattgctttcagcaagatagccatttttatt
atattgatctcaccaatccatgagcatgggagatctttccatcttctgaa
accttccttgatttctttcttaagagacttgaagttcttactatacatat
cttattcttccttagagtcacaccaaggcattttatattatttgtgacta
ttctgaagggtgtcttttccataacttatttcttagtctttttatccttt
atgtagagaaaagccactgatttatttgtgttaattttattatccagcta
cttttgtggaagttgtttatcaagtttagaaattcttctgttgaaatttc
tggagtcacactaatataatcttatcatattaatctgcaaaagaagaata
tatttggaactttcttctttctattgctattccttgaacctccttttgtt
gctaaataagtttggctagaacactcaattacattactgaataggcaccg
aaaagttggcagaccctggtctactccttgaatattatgagcag

gaattcatccccttgggtctttaattaaacaattttttaaaaaatcatat
ccttttcctgaaagtatcatgtacagctgtgcttaaaattaatgggggaa
atattgtggcaattcagcagtaaaagaaaacaatcaatgtgtctctgcaa
agctgttttccattgatctgttttaaatgactcttttcctgaaatacagt
gctttatatacctcacctaagaaaagcacatctctgccataggcatctgt
aggttaattgagctattgttatattgctttcggctaccttggatttgaat
ttgtcatatgtgatgtattattttcctcactttagggtaatgggtatact
tggcagtaatcaaaatgactgatgattcgcagtatgaagattttcctaac
acagagggtttgtacagaaacagaattgagagggaaacacttgagctgga
aataaagaagctttcagttgaaaattcgcattatacaatgccaactctat
gggttaactctaagcagacaccaatataaggttttgagtactttttgggt
gagggttcattttctgccaagaaatgaaattcagtctgaattgtatccca
gaaattaatcttctgctctgtggtaaatcatatgtatgaactaggcacag
ggagctgatgcaatagtttgtaccttgaaggaaaaatttttcccaatgtg
aatgctttaatacttaatttaacagagagcaaacatttagcttcacattg
ataggctgtcctgaacattatgcatcctttatctcctcttccttttcgtt
caaagtcatcattttcttcgtcttagtgttccagtacactacaggttgga
tctctaggcaagccatcttcaaaatcatctctgtggtgatctaatcctct
tgtttagagggctcacgaaatgaaatcaatagtctattcatttttgtcat
ggccatacagacttactgtcacctcagtctagcagggaaatgctgtgagt
gtatcactttttttttttttttttcaggttccaaggtaacaacccaaggt
tcagtacaaagtatctgtacttatctcctttataggttgagtttgagcct
tcttctccccagatcaggatattagaagaaaccttagctgtcactcagct
gcatttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_60540557_60541727
seq2: B6Ng01-305M21.g_67_1226 (reverse)

seq1  TCAGAAATGCAGCTGAGTGACAGCTAGAGTGTTTCTTTCCTAAATATTCC  50
      |||||||||||||||||||||||||| || |||||||  || |||| |||
seq2  TCAGAAATGCAGCTGAGTGACAGCTA-AG-GTTTCTT--CT-AATA-TCC  44

seq1  TGATCCTGGGGGAAGAAAGAAGCTCAAACTCAAACTATAAA-GAGATAAG  99
      |||||  ||| |||||   | |||||||||||| ||||||| ||||||||
seq2  TGATCTGGGGAGAAGA---AGGCTCAAACTCAACCTATAAAGGAGATAAG  91

seq1  TACAGATACTTTGTACTGAACTTGGGGTTGTTACCTT-GAAACTG--AAA  146
      ||||||||||||||||||||| | ||||||||||||| ||| |||  |||
seq2  TACAGATACTTTGTACTGAACCTTGGGTTGTTACCTTGGAACCTGAAAAA  141

seq1  AAAAAAAAAAAGGTGATAACAACTCACAGCATTTCCCCTGCCTAGACTGG  196
      ||||||||||| ||||||   ||||||||||||| ||||| |||||||| 
seq2  AAAAAAAAAAAAGTGATA--CACTCACAGCATTT-CCCTG-CTAGACTGA  187

seq1  AGTGACAGTAAAGTCTGTATGGCCATGACAAAAATGAAATAGACTATTGA  246
       |||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  GGTGACAGT-AAGTCTGTATGGCCATGACAAAAATG-AATAGACTATTGA  235

seq1  TTTCATTTCGTGAGCCCTCTAAACAAGAGGATTAGATCACCACAGAGATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTCGTGAGCCCTCTAAACAAGAGGATTAGATCACCACAGAGATG  285

seq1  ATTTTGAAGATGGCTTGCCTAGAGATCCAACCTGTAGTGTACTGGAACAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAGATGGCTTGCCTAGAGATCCAACCTGTAGTGTACTGGAACAC  335

seq1  TAAGACGAAGAAAATGATGACTTTGAACGAAAAGGAAGAGGAGATAAAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACGAAGAAAATGATGACTTTGAACGAAAAGGAAGAGGAGATAAAGG  385

seq1  ATGCATAATGTTCAGGACAGCCTATCAATGTGAAGCTAAATGTTTGCTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAATGTTCAGGACAGCCTATCAATGTGAAGCTAAATGTTTGCTCT  435

seq1  CTGTTAAATTAAGTATTAAAGCATTCACATTGGGAAAAATTTTTCCTTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAATTAAGTATTAAAGCATTCACATTGGGAAAAATTTTTCCTTCA  485

seq1  AGGTACAAACTATTGCATCAGCTCCCTGTGCCTAGTTCATACATATGATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAACTATTGCATCAGCTCCCTGTGCCTAGTTCATACATATGATT  535

seq1  TACCACAGAGCAGAAGATTAATTTCTGGGATACAATTCAGACTGAATTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGAGCAGAAGATTAATTTCTGGGATACAATTCAGACTGAATTTC  585

seq1  ATTTCTTGGCAGAAAATGAACCCTCACCCAAAAAGTACTCAAAACCTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGGCAGAAAATGAACCCTCACCCAAAAAGTACTCAAAACCTTAT  635

seq1  ATTGGTGTCTGCTTAGAGTTAACCCATAGAGTTGGCATTGTATAATGCGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTCTGCTTAGAGTTAACCCATAGAGTTGGCATTGTATAATGCGA  685

seq1  ATTTTCAACTGAAAGCTTCTTTATTTCCAGCTCAAGTGTTTCCCTCTCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAACTGAAAGCTTCTTTATTTCCAGCTCAAGTGTTTCCCTCTCAA  735

seq1  TTCTGTTTCTGTACAAACCCTCTGTGTTAGGAAAATCTTCATACTGCGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCTGTACAAACCCTCTGTGTTAGGAAAATCTTCATACTGCGAA  785

seq1  TCATCAGTCATTTTGATTACTGCCAAGTATACCCATTACCCTAAAGTGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTCATTTTGATTACTGCCAAGTATACCCATTACCCTAAAGTGAG  835

seq1  GAAAATAATACATCACATATGACAAATTCAAATCCAAGGTAGCCGAAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATACATCACATATGACAAATTCAAATCCAAGGTAGCCGAAAGC  885

seq1  AATATAACAATAGCTCAATTAACCTACAGATGCCTATGGCAGAGATGTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACAATAGCTCAATTAACCTACAGATGCCTATGGCAGAGATGTGC  935

seq1  TTTTCTTAGGTGAGGTATATAAAGCACTGTATTTCAGGAAAAGAGTCATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAGGTGAGGTATATAAAGCACTGTATTTCAGGAAAAGAGTCATT  985

seq1  TAAAACAGATCAATGGAAAACAGCTTTGCAGAGACACATTGATTGTTTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGATCAATGGAAAACAGCTTTGCAGAGACACATTGATTGTTTTC  1035

seq1  TTTTACTGCTGAATTGCCACAATATTTCCCCCATTAATTTTAAGCACAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGCTGAATTGCCACAATATTTCCCCCATTAATTTTAAGCACAGC  1085

seq1  TGTACATGATACTTTCAGGAAAAGGATATGATTTTTTAAAAAATTGTTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGATACTTTCAGGAAAAGGATATGATTTTTTAAAAAATTGTTTA  1135

seq1  ATTAAAGACCCAAGGGGATGAATTC  1171
      |||||||||||||||||||||||||
seq2  ATTAAAGACCCAAGGGGATGAATTC  1160


| Home | SequenceCutter | Blast | Download |