BAC Information

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BAC

Clone NameB6Ng01-306K13
Chromosome17 (Build37)
Map Location 17,509,531 - 17,630,408
singlet/doubletdoublet
Overlap geneRiok2, Lix1
Upstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965
Downstream geneLOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306K13.bB6Ng01-306K13.g
ACCGA099630GA099631
length1,1761,129
definitionB6Ng01-306K13.b B6Ng01-306K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,509,531 - 17,510,723)(17,629,272 - 17,630,408)
sequence
gaattccagactttaaaaaaaaaatgagaactttaggcactcagggtcct
ttatgagaagcaacatgtgtctgtatgagtttgactacagtggagaagtc
tgggaaagggaaattcaacattcttagtccttggcttttctgttacatcc
agtggttttttacacatctccttcccataagttcaagttttaggacttgg
gattaagtttccccagagcctagaaaaaaaaaagtggtatctatatttga
taaatggtgaatggatgaagaataggctaagtcagctgtgggtccagacc
cctttgggaaccccgtctccaaaaaagtatttgcattacattaagaattg
taacagtagcaaattacagttatgaagtagcaataaaaaacaattctatt
gttggcaatcaccacaaaataaactgtattaaaggaccgctgtactagga
tggttgggaaccactggcttaagtcacactaagtatggtgagaaaggaag
attgaatttaaatcctttactcataaatgacttgattactaaaaaaacaa
acaaacaaacaaaaaacccacaatattgaaaagatgagaaatctggactg
tgattaccccaatattccagaacttggatccaaacccactcaattagtgg
tggctctgtggagcaatgctgaaaggagacagaaagacagataatcaaag
cttcaaactttttgttttcacatgttctaatgttaatgtagaaagaaaaa
ttccattgtgtacaacggtcttaattagttaagtcctaattagatatgcc
tagaatcctgtattcaagcatacaagaccccaaagacaggaacataggag
atgaaaaagggattgatcttttgtttcgatttgatgattttagattacca
actactttagctggaccgatacggacactacagcctgctgtctgccccta
tgctttatgaaagagctactccaggaagatactcagcaccactctcaaag
gaggaaatggaatacatggtttcttggaactgggaggagtgggagtatgg
gaggaaccgtaggtattcttattctggagtcttaagtttggcacatacct
cagaatggaaggtaccaccgagtcggtggcacttctagtagacgatctaa
cctggacccttatagcgccccaagct
gaattcaaaccagaggtggctgctgatttcacgccagcctgaaagcaaaa
gaaaggcagagaccagagtcctcggtatacttttaagaacatgtccccaa
taacctaacttcctttcaagagatcccttctcctaaatggtcctctccct
tccaggcacatggcctttgggggaatttaaccaaaccacaagctggtggg
aagaaagagagcgagaagacagagaacagagaagcaaacaaataagttta
aaaccaagtgctgagaccaacatttacaaaggattatgaagtactatatg
tatccaaaataagtagttattatttgtcaagctgcctgaggatcttgaat
tgttttgcatatgaggaattgaattggttcttaaatgctggcataaatgg
cttcagctgggagtcagttgtgtagactaaggataggctaacgttagact
gagacaggagccacgctatttaagaggtatctacaggcaatccttggttc
agagctcctccggatctttctgttgagtgcttgaaattcctgcccctaca
aataattcttcaaaatgatggtcacattgtccctttaaggaaatgttcta
caaatacatataaactcttttaactggagagaaagcgtttgtggactagt
actaactaccttagcacattagttcattactacttttaaagcagacctcc
gggggaaacttttatttttaatcacgctccaaaagagaagtgcacagaat
gatggttctgaggattccttttagaaatctcttttacttatacacacttc
ccagtccttgcaacacacattagttataaagtggtgttgtgtaacttatt
cacttaataagaaatttactatttttaatcacatcctttcctccaccatc
ctctggatgtccaagtcctttgcttcaacacattcatgttaatttgggtt
tggggagaaattaataaatctagctggagcagtgcatcttaacacaaaac
tacaggtccccacgcatcctgagcagagctgctcgttcttgtgggagtgt
catggccgctgcatgcactgagagctgtagttctctcagcagcaacagat
caggttgggatctcctgtgaagcctgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_17509531_17510723
seq2: B6Ng01-306K13.b_51_1226

seq1  GAATTCCAGACTTTAAAAAAAAAATGAGAACTTTAGGCACTCAGGGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTTTAAAAAAAAAATGAGAACTTTAGGCACTCAGGGTCCT  50

seq1  TTATGAGAAGCAACATGTGTCTGTATGAGTTTGACTACAGTGGAGAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAAGCAACATGTGTCTGTATGAGTTTGACTACAGTGGAGAAGTC  100

seq1  TGGGAAAGGGAAATTCAACATTCTTAGTCCTTGGCTTTTCTGTTACATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGGGAAATTCAACATTCTTAGTCCTTGGCTTTTCTGTTACATCC  150

seq1  AGTGGTTTTTTACACATCTCCTTCCCATAAGTTCAAGTTTTAGGACTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTTTTACACATCTCCTTCCCATAAGTTCAAGTTTTAGGACTTGG  200

seq1  GATTAAGTTTCCCCAGAGCCTAGAAAAAAAAAAGTGGTATCTATATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTTTCCCCAGAGCCTAGAAAAAAAAAAGTGGTATCTATATTTGA  250

seq1  TAAATGGTGAATGGATGAAGAATAGGCTAAGTCAGCTGTGGGTCCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTGAATGGATGAAGAATAGGCTAAGTCAGCTGTGGGTCCAGACC  300

seq1  CCTTTGGGAACCCCGTCTCCAAAAAAGTATTTGCATTACATTAAGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGAACCCCGTCTCCAAAAAAGTATTTGCATTACATTAAGAATTG  350

seq1  TAACAGTAGCAAATTACAGTTATGAAGTAGCAATAAAAAACAATTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTAGCAAATTACAGTTATGAAGTAGCAATAAAAAACAATTCTATT  400

seq1  GTTGGCAATCACCACAAAATAAACTGTATTAAAGGACCGCTGTACTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAATCACCACAAAATAAACTGTATTAAAGGACCGCTGTACTAGGA  450

seq1  TGGTTGGGAACCACTGGCTTAAGTCACACTAAGTATGGTGAGAAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGAACCACTGGCTTAAGTCACACTAAGTATGGTGAGAAAGGAAG  500

seq1  ATTGAATTTAAATCCTTTACTCATAAATGACTTGATTACTAAAAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTTAAATCCTTTACTCATAAATGACTTGATTACTAAAAAAACAA  550

seq1  ACAAACAAACAAAAAACCCACAATATTGAAAAGATGAGAAATCTGGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAAAAACCCACAATATTGAAAAGATGAGAAATCTGGACTG  600

seq1  TGATTACCCCAATATTCCAGAACTTGGATCCAAACCCACTCAATTAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACCCCAATATTCCAGAACTTGGATCCAAACCCACTCAATTAGTGG  650

seq1  TGGCTCTGTGGAGCAATGCTGAAAGGAGACAGAAAGACAGATAATCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGTGGAGCAATGCTGAAAGGAGACAGAAAGACAGATAATCAAAG  700

seq1  CTTCAAACTTTTTGTTTTCACATGTTCTAATGTTAATGTAGAAAGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAACTTTTTGTTTTCACATGTTCTAATGTTAATGTAGAAAGAAAAA  750

seq1  TTCCATTGTGTACAACGGTCTTAATTAGTTAAGTCCTAATTAGATATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGTGTACAACGGTCTTAATTAGTTAAGTCCTAATTAGATATGCC  800

seq1  TAGAATCCTGTATTCAAGCATACAAGACCCCAAAGACAGGAACATA-GAG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGAATCCTGTATTCAAGCATACAAGACCCCAAAGACAGGAACATAGGAG  850

seq1  ATGAAAAA-GGATTGATCTTTTGTTTCGATTTGATGATTTTAGATTACCA  898
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGGGATTGATCTTTTGTTTCGATTTGATGATTTTAGATTACCA  900

seq1  ACTACTTTAGCTGGACCGATACGGACACTACAGCCTGCTGTCTGCCCCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTAGCTGGACCGATACGGACACTACAGCCTGCTGTCTGCCCCTA  950

seq1  TGCTTTATGAAAGAGCTTACTCCAGGAAGATACTCAGCACCACTCTCCAA  998
      |||||||||||||||| ||||||||||||||||||||||||||||||  |
seq2  TGCTTTATGAAAGAGC-TACTCCAGGAAGATACTCAGCACCACTCTC--A  997

seq1  AAGGAGGAAAT-GAATACATTGTTTCTTGGAAACTGGAAGGAGT-GGAGT  1046
      ||||||||||| |||||||| ||||||||| |||||| |||||| |||||
seq2  AAGGAGGAAATGGAATACATGGTTTCTTGG-AACTGGGAGGAGTGGGAGT  1046

seq1  ATGGAAGGAACACGAAGGTA-TCTTAATCT-GAGTCCTTAAAGTTTGCAC  1094
      |||| |||||| || ||||| ||||| ||| |||| |||||  || ||||
seq2  ATGGGAGGAAC-CGTAGGTATTCTTATTCTGGAGT-CTTAAGTTTGGCAC  1094

seq1  ATACCTCAAAAAAAAAAAAAAAAAAGTTACACACC-AGTCGTTGGCAATC  1143
      |||||||         | ||   ||| ||| |||| ||||| ||||| | 
seq2  ATACCTC---------AGAATGGAAGGTAC-CACCGAGTCGGTGGCACT-  1133

seq1  TCTCAAGTATAAAGCAGATCATAACACTGGACACTTATAGCG-CCCAAGC  1192
        || |||    ||  |||| |||| |||||| ||||||||| |||||||
seq2  --TCTAGT----AGACGATC-TAAC-CTGGACCCTTATAGCGCCCCAAGC  1175

seq1  T  1193
      |
seq2  T  1176

seq1: chr17_17629272_17630408
seq2: B6Ng01-306K13.g_65_1193 (reverse)

seq1  GTGCAGCTTTCACAGGAAGGGACCCAACTCTTGATCTGTTGCTGCCTTGA  50
      ||||||  |||||||||  |  |||||  | ||||||||||||||  |||
seq2  GTGCAGGCTTCACAGGA--GATCCCAA--CCTGATCTGTTGCTGC--TGA  44

seq1  GAG-ACTACAGCTCCTCAGGTTGCACTGCAGCCGCCATGACACT-CCACA  98
      ||| ||||||||| |||||  |||| |||||| ||||||||||| |||||
seq2  GAGAACTACAGCT-CTCAG--TGCA-TGCAGCGGCCATGACACTCCCACA  90

seq1  --GACGAGCAGCTCCTGGCCTTCAGGATGGCGT-GTGAACTGTAGTTTTG  145
         |||||||||| |||    ||||||| |||| | || |||||||||||
seq2  AGAACGAGCAGCT-CTG---CTCAGGAT-GCGTGGGGACCTGTAGTTTTG  135

seq1  TGTTAAGATGCACTGCTCCAGCTAAGATTTATTAATTTCTCCC--AAACC  193
      ||||||||||||||||||||||| |||||||||||||||||||  || ||
seq2  TGTTAAGATGCACTGCTCCAGCT-AGATTTATTAATTTCTCCCCAAACCC  184

seq1  AAATTAACATGAATGTGTTGAAGCAAAGGACTTGGACATCCAGAGGATGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACATGAATGTGTTGAAGCAAAGGACTTGGACATCCAGAGGATGG  234

seq1  TGGAGG-AAGGATGTGATTAAAAATAGTAAATTTCTTATTAAGTGAATAA  292
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAAAGGATGTGATTAAAAATAGTAAATTTCTTATTAAGTGAATAA  284

seq1  GTTACACAACACCACTTTATAACTAATGTGTGTTGCAAGGACTGGGAAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAACACCACTTTATAACTAATGTGTGTTGCAAGGACTGGGAAGT  334

seq1  GTGTATAAGTAAAAGAGATTTCTAAAAGGAATCCTCAGAACCATCATTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAGTAAAAGAGATTTCTAAAAGGAATCCTCAGAACCATCATTCT  384

seq1  GTGCACTTCTCTTTTGGAGCCTGATTAAAAATAAAAGTTTCCCCCGGAGG  442
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGCACTTCTCTTTTGGAGCGTGATTAAAAATAAAAGTTTCCCCCGGAGG  434

seq1  TCTGCTTTAAAAGTAGTAATGAACTAATGTGCTAAGGTAGTTAGTACTAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTAAAAGTAGTAATGAACTAATGTGCTAAGGTAGTTAGTACTAG  484

seq1  TCCACAAACGCTTTCTCTCCAGTTAAAAGAGTTTATATGTATTTGTAGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAACGCTTTCTCTCCAGTTAAAAGAGTTTATATGTATTTGTAGAA  534

seq1  CATTTCCTTAAAGGGACAATGTGACCATCATTTTGAAGAATTATTTGTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTTAAAGGGACAATGTGACCATCATTTTGAAGAATTATTTGTAG  584

seq1  GGGCAGGAATTTCAAGCACTCAACAGAAAGATCCGGAGGAGCTCTGAACC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAATTTCAAGCACTCAACAGAAAGATCCGGAGGAGCTCTGAACC  634

seq1  AAGGATTGCCTGTAGATACCTCTTAAATAGCGTGGCTCCTGTCTCAGTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGCCTGTAGATACCTCTTAAATAGCGTGGCTCCTGTCTCAGTCT  684

seq1  AACGTTAGCCTATCCTTAGTCTACACAACTGACTCCCAGCTGAAGCCATT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTAGCCTATCCTTAGTCTACACAACTGACTCCCAGCTGAAGCCATT  734

seq1  TATGCCAGCATTTAAGAACCAATTCAATTCCTCATATGCAAAACAATTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGCATTTAAGAACCAATTCAATTCCTCATATGCAAAACAATTCA  784

seq1  AGATCCTCAGGCAGCTTGACAAATAATAACTACTTATTTTGGATACATAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTCAGGCAGCTTGACAAATAATAACTACTTATTTTGGATACATAT  834

seq1  AGTACTTCATAATCCTTTGTAAATGTTGGTCTCAGCACTTGGTTTTAAAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTCATAATCCTTTGTAAATGTTGGTCTCAGCACTTGGTTTTAAAC  884

seq1  TTATTTGTTTGCTTCTCTGTTCTCTGTCTTCTCGCTCTCTTTCTTCCCAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTGCTTCTCTGTTCTCTGTCTTCTCGCTCTCTTTCTTCCCAC  934

seq1  CAGCTTGTGGTTTGGTTAAATTCCCCCAAAGGCCATGTGCCTGGAAGGGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTGGTTTGGTTAAATTCCCCCAAAGGCCATGTGCCTGGAAGGGA  984

seq1  GAGGACCATTTAGGAGAAGGGATCTCTTGAAAGGAAGTTAGGTTATTGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCATTTAGGAGAAGGGATCTCTTGAAAGGAAGTTAGGTTATTGGG  1034

seq1  GACATGTTCTTAAAAGTATACCGAGGACTCTGGTCTCTGCCTTTCTTTTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTCTTAAAAGTATACCGAGGACTCTGGTCTCTGCCTTTCTTTTG  1084

seq1  CTTTCAGGCTGGCGTGAAATCAGCAGCCACCTCTGGTTTGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGCTGGCGTGAAATCAGCAGCCACCTCTGGTTTGAATTC  1129