BAC Information

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BAC

Clone NameB6Ng01-307D16
Chromosome17 (Build37)
Map Location 56,078,767 - 56,264,483
singlet/doubletdoublet
Overlap geneBC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125
Downstream geneTnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307D16.bB6Ng01-307D16.g
ACCGA100054GA100055
length1,0181,060
definitionB6Ng01-307D16.b B6Ng01-307D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,078,767 - 56,079,451)(56,263,447 - 56,264,483)
sequence
gaattctttcatatatttgaagataactgggatatgtaaaggctttaccc
cattgatgatagtcatgctttgtgtctctagtattagttctacctacttg
attacaattctgatgtgaaatgagtttatcttcatgattatattcacagg
atttcattcccaaatgagttcttcggtgtggctgtaaagaggatttacca
cattgattccacacatagaggtcctcttcattataggccgtcttctgtat
ttgaagatacctgggatgggttaagcttttactacttggctcacatttat
cacttccttttcccatatgagtttggtcatgtctctgaagagaacaactc
agagctttaccacactgactgcattcataacattctcctatagagtgagt
cacactacacgtgcaaagtgaaccaggacagacaggagattttccacttt
ccttgtccacagagggcttttctccagtgtcagtattttgatgtattccc
actgaggctggaaaaccaagtacttgtaaacttgtatcacattcacctcc
tcttttcacaaagggggtgactacatatcttcttctaattgttctaggaa
agagattggtacactgcttctttccatatgcagagggacagttgatacac
ctattcaaggaagaataacaaataaaaggtgttcacattgcattcacatg
ctttaactttttgttcctcatagacatgtgctttagggattcaagtttct
ccactacaacaccttcttgactctcataaactacctctctcactatacta
tggtacatcctacaagtatatgaataacactagcttcactatggaggatt
tgcttaaagcagtcttggacatacattaaatcccctaaccaaatgtgttc
gcatttttctgatacttgagtggtgtaaaactaagtgggttgggactgtt
gtttttaaaacaaaatcccaaacattagatttaccaaatgaagactcgag
agccagatgctgtggtga
gaattcccttgtgagaggcatgaggcgtatcatggacggaaccccgccta
gaatagagcctggctcagtgcctatctagcagactttcagactggtttcc
aaggcggaaatcgcactgccactttctccccatctgtccccaggactctt
gcgcgccagcctctcagatgaccgcgcagggctggtgtcggtgaacctgc
tagtgacgtcctcggtggcagcgttcgtggtgggtgccgtggtgtccggc
ttcagtgtaggctggttcgtgggtctccgcgagcggcgggagctggcccg
gcgcaaggacaaggaggccattctggcgcacggcggcagcgaggcagttc
tgagcgtgagccgactaggcgagcgcagggggaccgggcccgggggtcgt
ggaggagccggcggcggtcccggaggtcccccggaggccctgctggcccc
gcttatgcagaatggctggacaaaggcagcgctgctgcatggtggccctc
acgacctggacacggggctgctgcccaccccagagcagacgcctctaccc
cagaaacgcctgcccacgccacacccacacgcccacgccctggggtctcg
agcctgggaccacagccacgcgctgctgtcggcctcagcctccacctcct
tgctcctactggcgcccgcccgcgcctctgagcagccccaggtgccagcc
gagccgggcccggaatctcgcctctgcgcccccagatcctgccgggcctc
tcacccaggcgacttcccgctcacgccccacgccagcccggaccgccggc
gggtggtgttccgcaccccacgggcccctttggacccttcggtgggcgac
ggccctgcccgggccatggagcccacctgcaacccagcagcctgcggaag
gccggggtccccaacgggccccccaacagccgcccttacggcgcacacac
acattcaaacagcggcgaggctcggcccgggggttcatcgtccttcgccg
ccaccccaccccgcgggaactctaacacactttgcttgcccttgccggga
acgggcgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56078767_56079451
seq2: B6Ng01-307D16.b_49_733

seq1  GAATTCTTTCATATATTTGAAGATAACTGGGATATGTAAAGGCTTTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATATATTTGAAGATAACTGGGATATGTAAAGGCTTTACCC  50

seq1  CATTGATGATAGTCATGCTTTGTGTCTCTAGTATTAGTTCTACCTACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGATAGTCATGCTTTGTGTCTCTAGTATTAGTTCTACCTACTTG  100

seq1  ATTACAATTCTGATGTGAAATGAGTTTATCTTCATGATTATATTCACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATTCTGATGTGAAATGAGTTTATCTTCATGATTATATTCACAGG  150

seq1  ATTTCATTCCCAAATGAGTTCTTCGGTGTGGCTGTAAAGAGGATTTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTCCCAAATGAGTTCTTCGGTGTGGCTGTAAAGAGGATTTACCA  200

seq1  CATTGATTCCACACATAGAGGTCCTCTTCATTATAGGCCGTCTTCTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTCCACACATAGAGGTCCTCTTCATTATAGGCCGTCTTCTGTAT  250

seq1  TTGAAGATACCTGGGATGGGTTAAGCTTTTACTACTTGGCTCACATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATACCTGGGATGGGTTAAGCTTTTACTACTTGGCTCACATTTAT  300

seq1  CACTTCCTTTTCCCATATGAGTTTGGTCATGTCTCTGAAGAGAACAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTTTTCCCATATGAGTTTGGTCATGTCTCTGAAGAGAACAACTC  350

seq1  AGAGCTTTACCACACTGACTGCATTCATAACATTCTCCTATAGAGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTACCACACTGACTGCATTCATAACATTCTCCTATAGAGTGAGT  400

seq1  CACACTACACGTGCAAAGTGAACCAGGACAGACAGGAGATTTTCCACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACACGTGCAAAGTGAACCAGGACAGACAGGAGATTTTCCACTTT  450

seq1  CCTTGTCCACAGAGGGCTTTTCTCCAGTGTCAGTATTTTGATGTATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCACAGAGGGCTTTTCTCCAGTGTCAGTATTTTGATGTATTCCC  500

seq1  ACTGAGGCTGGAAAACCAAGTACTTGTAAACTTGTATCACATTCACCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCTGGAAAACCAAGTACTTGTAAACTTGTATCACATTCACCTCC  550

seq1  TCTTTTCACAAAGGGGGTGACTACATATCTTCTTCTAATTGTTCTAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCACAAAGGGGGTGACTACATATCTTCTTCTAATTGTTCTAGGAA  600

seq1  AGAGATTGGTACACTGCTTCTTTCCATATGCAGAGGGACAGTTGATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGGTACACTGCTTCTTTCCATATGCAGAGGGACAGTTGATACAC  650

seq1  CTATTCAAGGAAGAATAACAAATAAAAGGTGTTCA  685
      |||||||||||||||||||||||||||||||||||
seq2  CTATTCAAGGAAGAATAACAAATAAAAGGTGTTCA  685

seq1: chr17_56263447_56264483
seq2: B6Ng01-307D16.g_65_1124 (reverse)

seq1  GCTCGCCCG-TCCCG--CAGGGC-AGC-AAGTGTG-TAGAGT--CCGCGG  42
      ||||||||| |||||   ||||| ||| ||||||| ||||||  ||||||
seq2  GCTCGCCCGTTCCCGGCAAGGGCAAGCAAAGTGTGTTAGAGTTCCCGCGG  50

seq1  G--TGGGTGGCGGCG-AGGACGATG-ACCCCCGGGCCGAGCCTCGCCGCT  88
      |   ||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  GGTGGGGTGGCGGCGAAGGACGATGAACCCCCGGGCCGAGCCTCGCCGCT  100

seq1  G-TTGAATGTGTGTGTGCGCCGT-AGGGCGGCTG-TGGGGGGCCCG-TGG  134
      | ||||||||||||||||||||| |||||||||| ||||||||||| |||
seq2  GTTTGAATGTGTGTGTGCGCCGTAAGGGCGGCTGTTGGGGGGCCCGTTGG  150

seq1  GGA-CCCGGCC-TCCGCAGGCTGCT-GGTTGCAGGTGGGCTCCATGGCCC  181
      ||| ||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GGACCCCGGCCTTCCGCAGGCTGCTGGGTTGCAGGTGGGCTCCATGGCCC  200

seq1  GGGCA-GGCCGTCGCCCACCGAAGGGTCC-AAGGGGCCCGT-GGGTGCGG  228
      ||||| ||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GGGCAGGGCCGTCGCCCACCGAAGGGTCCAAAGGGGCCCGTGGGGTGCGG  250

seq1  -ACACCACCCGCCGGCGGTCCGGGCTGGCGTGGGGCGTGAGCGGGAAGTC  277
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCACCCGCCGGCGGTCCGGGCTGGCGTGGGGCGTGAGCGGGAAGTC  300

seq1  GCCTGGGTGAGAGGCCCGGCAGGATCTGGGGGCGCAGAGGCGAGATTCCG  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTGAGAGGCCCGGCAGGATCTGGGGGCGCAGAGGCGAGATTCCG  350

seq1  GGCCCGGCTCGGCTGGCACCTGGGGCTGCTCAGAGGCGCGGGCGGGCGCC  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGGCTCGGCTGGCACCTGGGGCTGCTCAGAGGCGCGGGCGGGCGCC  400

seq1  AGTAGGAGCAAGGAGGTGGAGGCTGAGGCCGACAGCAGCGCGTGGCTGTG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGCAAGGAGGTGGAGGCTGAGGCCGACAGCAGCGCGTGGCTGTG  450

seq1  GTCCCAGGCTCGAGACCCCAGGGCGTGGGCGTGTGGGTGTGGCGTGGGCA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGCTCGAGACCCCAGGGCGTGGGCGTGTGGGTGTGGCGTGGGCA  500

seq1  GGCGTTTCTGGGGTAGAGGCGTCTGCTCTGGGGTGGGCAGCAGCCCCGTG  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTTCTGGGGTAGAGGCGTCTGCTCTGGGGTGGGCAGCAGCCCCGTG  550

seq1  TCCAGGTCGTGAGGGCCACCATGCAGCAGCGCTGCCTTTGTCCAGCCATT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCGTGAGGGCCACCATGCAGCAGCGCTGCCTTTGTCCAGCCATT  600

seq1  CTGCATAAGCGGGGCCAGCAGGGCCTCCGGGGGACCTCCGGGACCGCCGC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAAGCGGGGCCAGCAGGGCCTCCGGGGGACCTCCGGGACCGCCGC  650

seq1  CGGCTCCTCCACGACCCCCGGGCCCGGTCCCCCTGCGCTCGCCTAGTCGG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCCTCCACGACCCCCGGGCCCGGTCCCCCTGCGCTCGCCTAGTCGG  700

seq1  CTCACGCTCAGAACTGCCTCGCTGCCGCCGTGCGCCAGAATGGCCTCCTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTCAGAACTGCCTCGCTGCCGCCGTGCGCCAGAATGGCCTCCTT  750

seq1  GTCCTTGCGCCGGGCCAGCTCCCGCCGCTCGCGGAGACCCACGAACCAGC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGCGCCGGGCCAGCTCCCGCCGCTCGCGGAGACCCACGAACCAGC  800

seq1  CTACACTGAAGCCGGACACCACGGCACCCACCACGAACGCTGCCACCGAG  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGAAGCCGGACACCACGGCACCCACCACGAACGCTGCCACCGAG  850

seq1  GACGTCACTAGCAGGTTCACCGACACCAGCCCTGCGCGGTCATCTGAGAG  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCACTAGCAGGTTCACCGACACCAGCCCTGCGCGGTCATCTGAGAG  900

seq1  GCTGGCGCGCAAGAGTCCTGGGGACAGATGGGGAGAAAGTGGCAGTGCGA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGCGCAAGAGTCCTGGGGACAGATGGGGAGAAAGTGGCAGTGCGA  950

seq1  TTTCCGCCTTGGAAACCAGTCTGAAAGTCTGCTAGATAGGCACTGAGCCA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGCCTTGGAAACCAGTCTGAAAGTCTGCTAGATAGGCACTGAGCCA  1000

seq1  GGCTCTATTCTAGGCGGGGTTCCGTCCATGATACGCCTCATGCCTCTCAC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATTCTAGGCGGGGTTCCGTCCATGATACGCCTCATGCCTCTCAC  1050

seq1  AAGGGAATTC  1037
      ||||||||||
seq2  AAGGGAATTC  1060