BAC Information

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BAC

Clone NameB6Ng01-308E12
Chromosome17 (Build37)
Map Location 55,462,789 - 55,463,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
Downstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308E12.bB6Ng01-308E12.g
ACCGA100823GA100824
length1,1941,170
definitionB6Ng01-308E12.b B6Ng01-308E12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatggcacttggcattgattcatgttttcatttgtttgtttgttt
gctttattataaatcactttaaattatttatctcatattagcttaatctt
tgatcatagttataataagttctttaatttcttttatgtcttttgattta
ttattcttattcttctcttgctttcttttagttaatttggctatgtcttt
ctcactattgtttatccttcaaacagtaaacttttcatttcactgattaa
ttatattatgtttatcatttctatttcattgctttatcatcttatctaat
tatatctccatgtcttcttttaggtttagttattttttttattttctcag
tgcctttatgtatataagtattttatttcagctagctctgatttttttaa
tataggtacttataactataagattttctcttagtactactgttataaaa
tataacataatataaaataccaaaggattggtatattgtgtttttgtttt
ttagatatttatagaaaagttttttattactgtttcttcaaggaatcatt
aatcattcaaaagtgtgatttttaatcttcatgaatttgtatgctttttg
tagcttcagtgtctgttggcaaccagctttctcccatcattgttcagtaa
aatacaggatgttatttaaaatttcctaaatttgtccagactaacttggt
atactaatgtgagatcaactttgctgaaaattctataggatgctgagaag
aatgtacattctgtagtgaatagagtagaatgttttactaatgtctgtta
tgtccatttaatttatcattccatttaatccagtttatctttaattatta
ttatccaagtaactttgttatcaattcagccagacattgaacttcaccac
tattattgtgttaaggttaacctctgactttatatgtaagaacattgctt
gtgaaattgagtgcagctgtattggcacacatgtttacattgtaatgtca
ttttgatggattgttcttgaatctcttctggctaaatttgcttgaagcct
atttttgtcacagataatcagtactgaatacctgtttctgattccatggc
ttgaatacacttttcactatattaccctaggcacacttcattgaatgggt
gaagggtgtgatccctgaatagctctccaagagagaaaacatcg
gaattcttttctaaatttggtttctgcagactgaaacttggatactgaag
gctattgcaggggcctggggtgagaataagaacaatcaatgtattggagt
ctttggaatattgtaggatttcaatatagatccacctccccaacacacac
atttactaactgataacataaatttatcactttaacttttatctttctgc
attttatttctcgttgcttatcttgttttctatcttctaatgaggtctga
gttcattactctaccctgttttctgtctttggtttttttatgctctattc
attcttggttcatcttggggcaggtagctgtcagaaagtttcgatgaata
aacgtccttaatggatccctttgataaaatgaaaatcttccaggacaata
tttacagctcataatttagggtcctaattctgatgaagggaagccagaag
tcaaggttctgaacctacatgacagcaagggccatttgggcttgggtggt
ggaacttgaactctattggcaatatctcccataggtgcaaagaaacaagg
ttcctttgggaaatgatcgtctattgatgctggctggtttaccaatatga
catgacaatcaagaacagttactaggaagactggtggtgagagtgatcat
cctggagtgactatctactgcagtgatatgaatatggttatttcccatgg
ttcacagactggaggcataatccttactgtggtatgtcaaaagatggtga
acgccttgaaaggaagatattagagtatgggtatcataaagggccctgga
tatgggaaagggcaaacctattcatcttgctttctgtcattctgaccttc
tgagccctccttttacatctttctccatagtaatgaggcacatgcagtct
aggagtctttcatcacagactgagccaataggggtggcccaactattgat
ttagagcctttggaatttggagataattaatgtaaatatccttttcttta
ggaaatgtttagcttcaggcattttgttataacatgacattaaaaactac
agtaacacacaacatacctagacttgtaatttgggagtctgatgaatatt
cagatgttgaaggacttgaagtctactcttccactttgcattcttctgat
ctgtgagaatagttaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55462789_55463964
seq2: B6Ng01-308E12.g_66_1234 (reverse)

seq1  AAATTAACTA---TCTCAGATCAGAAAGAAGGCCAAAGTGGAAGAGTTAG  47
      ||||||||||   || |||||||| ||||| | ||||||||||||| |||
seq2  AAATTAACTATTCTCACAGATCAG-AAGAATG-CAAAGTGGAAGAG-TAG  47

seq1  ATTTTCAAATTCTTTTCACATCTG-ATATTCATCAGAACTTCCAAATTTA  96
      | ||   || || ||  ||||||| ||||||||||| ||| |||||||  
seq2  ACTT--CAAGTCCTTCAACATCTGAATATTCATCAG-ACTCCCAAATT--  92

seq1  ACAAGTCCTAGTATGTTTGTTGT-TGTTACTGTAGTTTTTAATGTCATTG  145
      |||||||    || || |||||| ||||||||||||||||||||||| ||
seq2  ACAAGTC----TAGGTATGTTGTGTGTTACTGTAGTTTTTAATGTCA-TG  137

seq1  TTATAACAAAATGCCTGAAGCTAAACATTTCCTAAAG-AAAGGATATTTA  194
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTATAACAAAATGCCTGAAGCTAAACATTTCCTAAAGAAAAGGATATTTA  187

seq1  CATTTATTTATCTCAAAATTTCAAAGGCTCTAAATCAATAGTT-GGCCAC  243
      || ||| ||||||| ||||| |||||||||||||||||||||| ||||||
seq2  CA-TTAATTATCTCCAAATTCCAAAGGCTCTAAATCAATAGTTGGGCCAC  236

seq1  CCCTATTGGCTCAGTCTGTGATGAAAGACTCCTAGACTGCATGTGCCTCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGGCTCAGTCTGTGATGAAAGACTCCTAGACTGCATGTGCCTCA  286

seq1  TTACTATGGAGAAAGATGTAAAAGGAGGGCTCAGAAGGTCAGAATGACAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGGAGAAAGATGTAAAAGGAGGGCTCAGAAGGTCAGAATGACAG  336

seq1  AAAGCAAGATGAATAGGTTTGCCCTTTCCCATATCCAGGGCCCTTTATGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGATGAATAGGTTTGCCCTTTCCCATATCCAGGGCCCTTTATGA  386

seq1  TACCCATACTCTAATATCTTCCTTTCAAGGCGTTCACCATCTTTTGACAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATACTCTAATATCTTCCTTTCAAGGCGTTCACCATCTTTTGACAT  436

seq1  ACCACAGTAAGGATTATGCCTCCAGTCTGTGAACCATGGGAAATAACCAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTAAGGATTATGCCTCCAGTCTGTGAACCATGGGAAATAACCAT  486

seq1  ATTCATATCACTGCAGTAGATAGTCACTCCAGGATGATCACTCTCACCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATCACTGCAGTAGATAGTCACTCCAGGATGATCACTCTCACCAC  536

seq1  CAGTCTTCCTAGTAACTGTTCTTGATTGTCATGTCATATTGGTAAACCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCCTAGTAACTGTTCTTGATTGTCATGTCATATTGGTAAACCAG  586

seq1  CCAGCATCAATAGACGATCATTTCCCAAAGGAACCTTGTTTCTTTGCACC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCAATAGACGATCATTTCCCAAAGGAACCTTGTTTCTTTGCACC  636

seq1  TATGGGAGATATTGCCAATAGAGTTCAAGTTCCACCACCCAAGCCCAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAGATATTGCCAATAGAGTTCAAGTTCCACCACCCAAGCCCAAAT  686

seq1  GGCCCTTGCTGTCATGTAGGTTCAGAACCTTGACTTCTGGCTTCCCTTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGCTGTCATGTAGGTTCAGAACCTTGACTTCTGGCTTCCCTTCA  736

seq1  TCAGAATTAGGACCCTAAATTATGAGCTGTAAATATTGTCCTGGAAGATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTAGGACCCTAAATTATGAGCTGTAAATATTGTCCTGGAAGATT  786

seq1  TTCATTTTATCAAAGGGATCCATTAAGGACGTTTATTCATCGAAACTTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTATCAAAGGGATCCATTAAGGACGTTTATTCATCGAAACTTTC  836

seq1  TGACAGCTACCTGCCCCAAGATGAACCAAGAATGAATAGAGCATAAAAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTACCTGCCCCAAGATGAACCAAGAATGAATAGAGCATAAAAAA  886

seq1  ACCAAAGACAGAAAACAGGGTAGAGTAATGAACTCAGACCTCATTAGAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGACAGAAAACAGGGTAGAGTAATGAACTCAGACCTCATTAGAAG  936

seq1  ATAGAAAACAAGATAAGCAACGAGAAATAAAATGCAGAAAGATAAAAGTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAACAAGATAAGCAACGAGAAATAAAATGCAGAAAGATAAAAGTT  986

seq1  AAAGTGATAAATTTATGTTATCAGTTAGTAAATGTGTGTGTTGGGGAGGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATAAATTTATGTTATCAGTTAGTAAATGTGTGTGTTGGGGAGGT  1036

seq1  GGATCTATATTGAAATCCTACAATATTCCAAAGACTCCAATACATTGATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTATATTGAAATCCTACAATATTCCAAAGACTCCAATACATTGATT  1086

seq1  GTTCTTATTCTCACCCCAGGCCCCTGCAATAGCCTTCAGTATCCAAGTTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATTCTCACCCCAGGCCCCTGCAATAGCCTTCAGTATCCAAGTTT  1136

seq1  CAGTCTGCAGAAACCAAATTTAGAAAAGAATTC  1176
      |||||||||||||||||||||||||||||||||
seq2  CAGTCTGCAGAAACCAAATTTAGAAAAGAATTC  1169