BAC Information

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BAC

Clone NameB6Ng01-308K09
Chromosome17 (Build37)
Map Location 59,040,016 - 59,194,376
singlet/doubletdoublet
Overlap gene2610034M16Rik, Nudt12, 4930505H01Rik
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308K09.bB6Ng01-308K09.g
ACCGA101093GA101094
length9451,061
definitionB6Ng01-308K09.b B6Ng01-308K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,040,016 - 59,040,958)(59,193,313 - 59,194,376)
sequence
gaattctctcgtgtacagcctgagtcttagcaactgtaggaactgagagt
tgagaggcagaaagaaatgggccagggtctttgtgtgctgggttgcagtt
caagcagtgagctactggagagaaatcagaagagtggcacagttagggaa
ggtttgaaggtgaggttcaaattataaatgccagattgcagagtttgact
cggttctatgaatgaaaatggattcctgaaacatttagaaagagatgtca
tacagtttttcattatttattttttaaaaatcaaagggaagaggcagcta
tgcacttaaagtacaacagagtttttccacttatgtccttaaagcctgca
ttttaagtgtctgtctaagaagataccacaaactcaaatacatgggttcc
caaggaaatacagtacaaaggaactttatttgaaaggcagcattctgcct
ttttgtatctctcagtctagaacaaagtcaagtctctaagagcccgaagg
agggaccagttgtcataaagccataattaagttatatttgcacaatgaga
ttacaatagtattatccattgacttagaaacagagcctcagcttaactcc
agaaatgtcaatttggatagggtatcaggacagttcagttttgcatctag
aaagagtctgggctcatccaagaggcacccatgtgagctgggtgctaccc
cctttctgagcttcccagttcccattttgtaattgagataagaatgtttg
ttaaatggtgcttgttcaaatttaattgcttcttgagttcccattttgtg
tataataagctcttgctgtgttatttttctattgtttacttttttaaaaa
agtaaaatgcaatgatgaaataaagtattctccgtagcttattagcacta
agtgctttcttagcaccagttgcttattttttattctgggaattc

gaattcattaaggattaatttatcctctaagctaaccttcttcctcagct
tcaatgataagtgtgaaggtcagatgagtagtatcccattgggtatcaca
agccccagtgataacttctaactttgatctataattctatggtgtatttg
accaccccagagctctcaataattatctccctataatgaaactgcacaga
ggtgaatcaaaggctctgctattcttagaacccagcgctaaagttagttg
tccatttctaccagcaatctcagtaagtttgcctcccaagtttttgccaa
tgcggagaaccaggttacccaaccttctcctgactcagctctgatgaatg
atggtcatccaacaagaaggaagattctttgcgttgtcctgtggcctaag
gattctgagagttaaaaactaagggattctgtgagctttggagcatccct
ttagttgatgacaacctatgagaacaaggaaaatgttcaccgactcatta
tctcctatgagtcacctcaaaattagattctatttttaaaacctgacata
aaatgaccacagagattgtttctaaagtagttccttcagctataacttta
aaagaagctgttcaagaatcatatatttaggtttcctctcattactaata
ggagacagggaataaaattttctatttgtattacagaataaataagaatg
atccattacatttttttaaaagttaacatcacttaattgtgtaactaaga
ccacacagtgaaaatgtataaaacattactgcacagttagaagcaatttg
cattttttcttctttccatctactaatatttataaaagcattatattttg
tttaggtgaagtttgtgcctttctatgttacagaggacaaattattgtat
tagtgaacatacagatctgttccacaacctgataaataattttaatgcca
aattttgaaaataaatgggtaatttttcattctgtatttagaaagatgat
tttcagcactttgctctttcaaaaacattttcccaacttttctagatcag
tttcctatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59040016_59040958
seq2: B6Ng01-308K09.b_45_989

seq1  GAATTCTCTCGTGTACAGCCTGAGTCTTAGCAACTGTAGGAACTGAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCGTGTACAGCCTGAGTCTTAGCAACTGTAGGAACTGAGAGT  50

seq1  TGAGAGGCAGAAAGAAATGGGCCAGGGTCTTTGTGTGCTGGGTTGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGCAGAAAGAAATGGGCCAGGGTCTTTGTGTGCTGGGTTGCAGTT  100

seq1  CAAGCAGTGAGCTACTGGAGAGAAATCAGAAGAGTGGCACAGTTAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGTGAGCTACTGGAGAGAAATCAGAAGAGTGGCACAGTTAGGGAA  150

seq1  GGTTTGAAGGTGAGGTTCAAATTATAAATGCCAGATTGCAGAGTTTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAAGGTGAGGTTCAAATTATAAATGCCAGATTGCAGAGTTTGACT  200

seq1  CGGTTCTATGAATGAAAATGGATTCCTGAAACATTTAGAAAGAGATGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCTATGAATGAAAATGGATTCCTGAAACATTTAGAAAGAGATGTCA  250

seq1  TACAGTTTTTCATTATTTATTTTTTAAAAATCAAAGGGAAGAGGCAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTTCATTATTTATTTTTTAAAAATCAAAGGGAAGAGGCAGCTA  300

seq1  TGCACTTAAAGTACAACAGAGTTTTTCCACTTATGTCCTTAAAGCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTAAAGTACAACAGAGTTTTTCCACTTATGTCCTTAAAGCCTGCA  350

seq1  TTTTAAGTGTCTGTCTAAGAAGATACCACAAACTCAAATACATGGGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGTCTGTCTAAGAAGATACCACAAACTCAAATACATGGGTTCC  400

seq1  CAAGGAAATACAGTACAAAGGAACTTTATTTGAAAGGCAGCATTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAATACAGTACAAAGGAACTTTATTTGAAAGGCAGCATTCTGCCT  450

seq1  TTTTGTATCTCTCAGTCTAGAACAAAGTCAAGTCTCTAAGAGCCCGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATCTCTCAGTCTAGAACAAAGTCAAGTCTCTAAGAGCCCGAAGG  500

seq1  AGGGACCAGTTGTCATAAAGCCATAATTAAGTTATATTTGCACAATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCAGTTGTCATAAAGCCATAATTAAGTTATATTTGCACAATGAGA  550

seq1  TTACAATAGTATTATCCATTGACTTAGAAACAGAGCCTCAGCTTAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATAGTATTATCCATTGACTTAGAAACAGAGCCTCAGCTTAACTCC  600

seq1  AGAAATGTCAA-TTGGATAGGGTATCAGGACAGTTCAGTTTTGCATCTAG  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTCAATTTGGATAGGGTATCAGGACAGTTCAGTTTTGCATCTAG  650

seq1  AAAGAGTCTGGGCTCAGCCAAGAGGCACCCATGTGAGCTGGGTGCTACCC  699
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGAGTCTGGGCTCATCCAAGAGGCACCCATGTGAGCTGGGTGCTACCC  700

seq1  CCTTTCTGAGCTTCCCAGTTCCCA-TTTGTAAATGAGATAAGAATG-TTG  747
      |||||||||||||||||||||||| ||||||| ||||||||||||| |||
seq2  CCTTTCTGAGCTTCCCAGTTCCCATTTTGTAATTGAGATAAGAATGTTTG  750

seq1  TTAAATGGTGCTTGTTCAAATTTAATTGCTTCTTGAGTTCCCATTTTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGTGCTTGTTCAAATTTAATTGCTTCTTGAGTTCCCATTTTGTG  800

seq1  TATAATAAGCTCTTGCTGTGTTATTTTTCTATAGTTTACTTTTTTTAAAA  847
      |||||||||||||||||||||||||||||||| |||||| ||||||||||
seq2  TATAATAAGCTCTTGCTGTGTTATTTTTCTATTGTTTAC-TTTTTTAAAA  849

seq1  AAGTAAAATGCAATGATGAAATAAAGTTATTCT-CGTAGCTTATTTAGCA  896
      |||||||||||||||||||||||||| |||||| ||||||||| ||||||
seq2  AAGTAAAATGCAATGATGAAATAAAG-TATTCTCCGTAGCTTA-TTAGCA  897

seq1  CATAGTGCTTTCTTAGCAACAG-TGCATATTTTTTTATCTGGGAATTC  943
      |  ||||||||||||||| ||| ||| ||||||||  |||||||||||
seq2  CTAAGTGCTTTCTTAGCACCAGTTGCTTATTTTTTATTCTGGGAATTC  945


seq1: chr17_59193313_59194376
seq2: B6Ng01-308K09.g_69_1129 (reverse)

seq1  GGGATAGGAAACTGATTCTTAGGAAAAGGTTTGGGAAATG-TTTTGAAAG  49
      ||||||||||||||||   |||  ||| ||| || ||||| |||||||||
seq2  GGGATAGGAAACTGAT--CTAG--AAAAGTTGGGAAAATGTTTTTGAAAG  46

seq1  AGCAAAGTGCTGAAAATCATCTTTCTAAATACAGAATGAAAAATTA-CCA  98
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCAAAGTGCTGAAAATCATCTTTCTAAATACAGAATGAAAAATTACCCA  96

seq1  TTTATTTTCAAAATTTGGCATTAAAATTATTTATCAGGTTTGTGGAACAG  148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTATTTTCAAAATTTGGCATTAAAATTATTTATCAGG-TTGTGGAACAG  145

seq1  ATCTGTATGTTCACTAATACAATAATTTGTCCTCTGTAACATAGAAAGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATGTTCACTAATACAATAATTTGTCCTCTGTAACATAGAAAGGC  195

seq1  ACAAACTTCACCTAAACAAAATATAATGCTTTTATAAATATTAGTAGATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTCACCTAAACAAAATATAATGCTTTTATAAATATTAGTAGATG  245

seq1  GAAAGAAGAAAAAATGCAAATTGCTTCTAACTGTGCAGTAATGTTTTATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAAAAAATGCAAATTGCTTCTAACTGTGCAGTAATGTTTTATA  295

seq1  CATTTTCACTGTGTGGTCTTAGTTACACAATTAAGTGATGTTAACTTTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCACTGTGTGGTCTTAGTTACACAATTAAGTGATGTTAACTTTTA  345

seq1  AAAAAATGTAATGGATCATTCTTATTTATTCTGTAATACAAATAGAAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTAATGGATCATTCTTATTTATTCTGTAATACAAATAGAAAAT  395

seq1  TTTATTCCCTGTCTCCTATTAGTAATGAGAGGAAACCTAAATATATGATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCCTGTCTCCTATTAGTAATGAGAGGAAACCTAAATATATGATT  445

seq1  CTTGAACAGCTTCTTTTAAAGTTATAGCTGAAGGAACTACTTTAGAAACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACAGCTTCTTTTAAAGTTATAGCTGAAGGAACTACTTTAGAAACA  495

seq1  ATCTCTGTGGTCATTTTATGTCAGGTTTTAAAAATAGAATCTAATTTTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGGTCATTTTATGTCAGGTTTTAAAAATAGAATCTAATTTTGA  545

seq1  GGTGACTCATAGGAGATAATGAGTCGGTGAACATTTTCCTTGTTCTCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTCATAGGAGATAATGAGTCGGTGAACATTTTCCTTGTTCTCATA  595

seq1  GGTTGTCATCAACTAAAGGGATGCTCCAAAGCTCACAGAATCCCTTAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCATCAACTAAAGGGATGCTCCAAAGCTCACAGAATCCCTTAGTT  645

seq1  TTTAACTCTCAGAATCCTTAGGCCACAGGACAACGCAAAGAATCTTCCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCTCAGAATCCTTAGGCCACAGGACAACGCAAAGAATCTTCCTT  695

seq1  CTTGTTGGATGACCATCATTCATCAGAGCTGAGTCAGGAGAAGGTTGGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGATGACCATCATTCATCAGAGCTGAGTCAGGAGAAGGTTGGGT  745

seq1  AACCTGGTTCTCCGCATTGGCAAAAACTTGGGAGGCAAACTTACTGAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTTCTCCGCATTGGCAAAAACTTGGGAGGCAAACTTACTGAGAT  795

seq1  TGCTGGTAGAAATGGACAACTAACTTTAGCGCTGGGTTCTAAGAATAGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTAGAAATGGACAACTAACTTTAGCGCTGGGTTCTAAGAATAGCA  845

seq1  GAGCCTTTGATTCACCTCTGTGCAGTTTCATTATAGGGAGATAATTATTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTGATTCACCTCTGTGCAGTTTCATTATAGGGAGATAATTATTG  895

seq1  AGAGCTCTGGGGTGGTCAAATACACCATAGAATTATAGATCAAAGTTAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTGGGGTGGTCAAATACACCATAGAATTATAGATCAAAGTTAGA  945

seq1  AGTTATCACTGGGGCTTGTGATACCCAATGGGATACTACTCATCTGACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCACTGGGGCTTGTGATACCCAATGGGATACTACTCATCTGACCT  995

seq1  TCACACTTATCATTGAAGCTGAGGAAGAAGGTTAGCTTAGAGGATAAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTATCATTGAAGCTGAGGAAGAAGGTTAGCTTAGAGGATAAATT  1045

seq1  AATCCTTAATGAATTC  1064
      ||||||||||||||||
seq2  AATCCTTAATGAATTC  1061


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