BAC Information

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BAC

Clone NameB6Ng01-309D23
Chromosome17 (Build37)
Map Location 22,743,193 - 22,912,960
singlet/doubletdoublet
Overlap geneEG628185, ENSMUSG00000046088, EG383218, EG433078
Upstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656
Downstream geneLOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309D23.bB6Ng01-309D23.g
ACCGA101536GA101537
length1,1451,051
definitionB6Ng01-309D23.b B6Ng01-309D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,743,193 - 22,744,335)(22,911,906 - 22,912,960)
sequence
gaattctgatgtgattagttttaatgtgtcatattcaaactgcctaattt
catttgaatatctcctgttgctctggtaatatgaaatttaaacttactat
tcttcctcaatgtgattaagaattccattcttagggaaaagaacatagaa
gctgaaaatgaagtgaaagaactgtttatcaatctagaggataaattgaa
atctcacatgttttctatccagacttcacatgagccttataaacacattt
tcttgaaaaaaatttaagaatgcagtcagtgttattcatatatatctctc
tatatgtctctctctatatatacgaatctcagtgtggaatctaataaaca
aaaatgttcagacatcaaggaaatatttaaaacattagatttaagtaaaa
gtatgttcaatgatatactaaacaaggaatcaaagaatgattttaagaat
ggtaaaaaaagaaatcaaagaaaggcagtaatcacctctgggtaaataca
attaaactatgaaagctttaatcactgagaccctgagtgcgaaaatgaca
aaggatttcactaaattataaaataatgaaggaatttcaatatatatatg
atatatataaaagaactaaaccaaataaatatatcagtaaatagtctcac
aaaaggcatgctccaaattgatgattgaagaaaaaaggcttaagaagtac
aaaattcaaactatgacaaggataaaacaacaagaaaaataaaattcata
ggttaacaaggatgtatgattaaataataaaatttaaaaccaatgggaac
aagacagaaaagaagcaactctcagtagccactgtatatccattatattg
catctgtacatatcgaaaataatgtaggaaaagtagagatcggtctagta
gaaacatataaataggaagcttgaaataaaaaatactcagctgttgaaat
aaaaatagtccttgtcaaattttacttaaaatttatttctggaaatagag
catatatgaatgcacaggggaaaatcttcagtgatggaagactcttcttt
tgttaagagcaagttccacagcttcaatcatttttaaatgtagcctgctc
atcattcattgaattcatttgctttctatactgaataacaattta
gaattcagtattaatttaggaattctcagaatgatcacacagggaagccc
gtcttgaaggaggggagaggtggtttctcagcgagaggaggagtcacatg
gtggctcaagcactgaaccttaaacaaacacaagggcagacttggttcac
aggctctgaggtcccctgctgtgaaaagagacaagatgactgctccgagg
cagaaagacagagagttaaagatgcctgcttcctacaagcaggtaatcat
aggacataagtttaaagtttggtttatttgtttttaaagctagataaaac
tacagagtttgcccatgtcacgtgtggaattccgcatgtggttcggaagt
agtacagggaaaattatactgggtccaggcagagagcaaattggttgaaa
ctgtctgcttcctctaggctgatatttgtagaagtgtgatttatttactt
taaatatggtctaataaagtctgcaggaaaactcattcttcgaatgtagg
ccccgtggggatttttgggttatatatcctgacacaacaaattaaggaaa
aggcctgagaataggtttatacagcaagcaaaatgtctcttaggataata
gggaaattgtatgaaaacaaatgttttaaggaagctttaaagtcatacaa
ggtaactcatagtctttgaacgtgggctccacgggaattttggcttaatg
tgaatttgagttttgtggttgttttattactcctctgagagagagatcaa
gctaaaagttttcctggttactggctaaagggcaagctgatcgatttggg
atagaggcgttgactttgtgtttgtagaaaaggtgattagactctccatc
ccttccagagttatatgcatcagctatgatagagggaggcccactgaaga
actagattcaagagaatcaacaaaaaatgtaacattcgttgtgccatcct
tcacatggcacaaatgaagacttatgattggttatattaaaatttggctc
aataaagactgtattcacatgctcaaattggcagagttcatctacctagt
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22743193_22744335
seq2: B6Ng01-309D23.b_47_1191

seq1  GAATTCTGATGTGATTAGTTTTAATGTGTCATATTCAAACTGCCTAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGTGATTAGTTTTAATGTGTCATATTCAAACTGCCTAATTT  50

seq1  CATTTGAATATCTCCTGTTGCTCTGGTAATATGAAATTTAAACTTACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATATCTCCTGTTGCTCTGGTAATATGAAATTTAAACTTACTAT  100

seq1  TCTTCCTCAATGTGATTAAGAATTCCATTCTTAGGGAAAAGAACATAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCAATGTGATTAAGAATTCCATTCTTAGGGAAAAGAACATAGAA  150

seq1  GCTGAAAATGAAGTGAAAGAACTGTTTATCAATCTAGAGGATAAATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAATGAAGTGAAAGAACTGTTTATCAATCTAGAGGATAAATTGAA  200

seq1  ATCTCACATGTTTTCTATCCAGACTTCACATGAGCCTTATAAACACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACATGTTTTCTATCCAGACTTCACATGAGCCTTATAAACACATTT  250

seq1  TCTTGAAAAAAATTTAAGAATGCAGTCAGTGTTATTCATATATATCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAAAATTTAAGAATGCAGTCAGTGTTATTCATATATATCTCTC  300

seq1  TATATGTCTCTCTCTATATATACGAATCTCAGTGTGGAATCTAATAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCTCTCTCTATATATACGAATCTCAGTGTGGAATCTAATAAACA  350

seq1  AAAATGTTCAGACATCAAGGAAATATTTAAAACATTAGATTTAAGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCAGACATCAAGGAAATATTTAAAACATTAGATTTAAGTAAAA  400

seq1  GTATGTTCAATGATATACTAAACAAGGAATCAAAGAATGATTTTAAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTCAATGATATACTAAACAAGGAATCAAAGAATGATTTTAAGAAT  450

seq1  GGTAAAAAAAGAAATCAAAGAAAGGCAGTAATCACCTCTGGGTAAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAAAAGAAATCAAAGAAAGGCAGTAATCACCTCTGGGTAAATACA  500

seq1  ATTAAACTATGAAAGCTTTAATCACTGAGACCCTGAGTGCGAAAATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTATGAAAGCTTTAATCACTGAGACCCTGAGTGCGAAAATGACA  550

seq1  AAGGATTTCACTAAATTATAAAATAATGAAGGAATTTCAATATATATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTCACTAAATTATAAAATAATGAAGGAATTTCAATATATATATG  600

seq1  ATATATATAAAAGAACTAAACCAAATAAATATATCAGTAAATAGTCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAAAAGAACTAAACCAAATAAATATATCAGTAAATAGTCTCAC  650

seq1  AAAAGGCATGCTCCAAATTGATGATTGAAGAAAAAAGGCTTAAGAAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCATGCTCCAAATTGATGATTGAAGAAAAAAGGCTTAAGAAGTAC  700

seq1  AAAATTCAAACTATGACAAGGATAAAACAACAAGAAAAATAAAATTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAAACTATGACAAGGATAAAACAACAAGAAAAATAAAATTCATA  750

seq1  GGTTAACAAGGATGTATGATTAAATAATAAAATTTAAAACCAATGGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACAAGGATGTATGATTAAATAATAAAATTTAAAACCAATGGGAAC  800

seq1  AAGACAGAAAAGAAGCAACTCTCAGTAGCCACTGTATATCCATTATATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAAAGAAGCAACTCTCAGTAGCCACTGTATATCCATTATATTG  850

seq1  CATCTGTACATATCGAAAATAATGTAGGAAAAGTAGAGATCGGTCTAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTACATATCGAAAATAATGTAGGAAAAGTAGAGATCGGTCTAGTA  900

seq1  GAAACATATAAATAGGAAGCTTGAAATAAAAAATACTCAGCTGTTGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATATAAATAGGAAGCTTGAAATAAAAAATACTCAGCTGTTGAAAT  950

seq1  -AAAATAGTCCTTGTCAAATTTTACTTAAAATTTA-TTCTGGAAATAGGA  998
       |||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAAAATAGTCCTTGTCAAATTTTACTTAAAATTTATTTCTGGAAATA-GA  999

seq1  GCATATATGAATGCACAGGGGAAAA-CCTCAGTGATGGGAAGACTC-TCT  1046
      ||||||||||||||||||||||||| | |||||||| ||||||||| |||
seq2  GCATATATGAATGCACAGGGGAAAATCTTCAGTGAT-GGAAGACTCTTCT  1048

seq1  TTTGTTAAGAGCAGGTTCCACCAGCTTCAATCATTTTTAAATGTAGCTTG  1096
      ||||||||||||| |||||| |||||||||||||||||||||||||| ||
seq2  TTTGTTAAGAGCAAGTTCCA-CAGCTTCAATCATTTTTAAATGTAGCCTG  1097

seq1  CTCATTCATTCATTG-ATTCATTTGCTTTCTATACTG-ATAACCATTTA  1143
      |||| |||||||||| ||||||||||||||||||||| ||||| |||||
seq2  CTCA-TCATTCATTGAATTCATTTGCTTTCTATACTGAATAACAATTTA  1145

seq1: chr17_22911906_22912960
seq2: B6Ng01-309D23.g_64_1114 (reverse)

seq1  GACTAGGTAGGATGAAACTCTG-CAATTTGAGCATGTGAAATACAGTCTT  49
      ||||||||| |||| ||||||| ||||||||||||||| |||||||||||
seq2  GACTAGGTA-GATG-AACTCTGCCAATTTGAGCATGTG-AATACAGTCTT  47

seq1  TTATGAGCC-AATTTTAATAATAACCAATCATAAGTCTTCATTTGTGCCA  98
      |  |||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  TATTGAGCCAAATTTTAAT-ATAACCAATCATAAGTCTTCATTTGTGCCA  96

seq1  TGTGAAGGATGGCACAACGAATGTTTACATTTTTTGTTTGATTCTCTTGA  148
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  TGTGAAGGATGGCACAACGAATG-TTACATTTTTTG-TTGATTCTCTTGA  144

seq1  ATCTAGTTCTTCAGTGGGCCTCCCTCTATCATAGCTGATGCATATAACTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTCTTCAGTGGGCCTCCCTCTATCATAGCTGATGCATATAACTC  194

seq1  TGGAAGGGATGGAGAGTCTAATCACCTTTTCTACAAACACAAAGTCAACG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGATGGAGAGTCTAATCACCTTTTCTACAAACACAAAGTCAACG  244

seq1  CCTCTATCCCAAATCGATCAGCTTGCCCTTTAGCCAGTAACCAGGAAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCCCAAATCGATCAGCTTGCCCTTTAGCCAGTAACCAGGAAAAC  294

seq1  TTTTAGCTTGATCTCTCTCTCAGAGGAGTAATAAAACAACCACAAAACTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTTGATCTCTCTCTCAGAGGAGTAATAAAACAACCACAAAACTC  344

seq1  AAATTCACATTAAGCCAAAATTCCCGTGGAGCCCACGTTCAAAGACTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACATTAAGCCAAAATTCCCGTGGAGCCCACGTTCAAAGACTATG  394

seq1  AGTTACCTTGTATGACTTTAAAGCTTCCTTAAAACATTTGTTTTCATACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTTGTATGACTTTAAAGCTTCCTTAAAACATTTGTTTTCATACA  444

seq1  ATTTCCCTATTATCCTAAGAGACATTTTGCTTGCTGTATAAACCTATTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTATTATCCTAAGAGACATTTTGCTTGCTGTATAAACCTATTCT  494

seq1  CAGGCCTTTTCCTTAATTTGTTGTGTCAGGATATATAACCCAAAAATCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTTTCCTTAATTTGTTGTGTCAGGATATATAACCCAAAAATCCC  544

seq1  CACGGGGCCTACATTCGAAGAATGAGTTTTCCTGCAGACTTTATTAGACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGGCCTACATTCGAAGAATGAGTTTTCCTGCAGACTTTATTAGACC  594

seq1  ATATTTAAAGTAAATAAATCACACTTCTACAAATATCAGCCTAGAGGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAGTAAATAAATCACACTTCTACAAATATCAGCCTAGAGGAAG  644

seq1  CAGACAGTTTCAACCAATTTGCTCTCTGCCTGGACCCAGTATAATTTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTTTCAACCAATTTGCTCTCTGCCTGGACCCAGTATAATTTTCC  694

seq1  CTGTACTACTTCCGAACCACATGCGGAATTCCACACGTGACATGGGCAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTACTTCCGAACCACATGCGGAATTCCACACGTGACATGGGCAAA  744

seq1  CTCTGTAGTTTTATCTAGCTTTAAAAACAAATAAACCAAACTTTAAACTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGTTTTATCTAGCTTTAAAAACAAATAAACCAAACTTTAAACTT  794

seq1  ATGTCCTATGATTACCTGCTTGTAGGAAGCAGGCATCTTTAACTCTCTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTATGATTACCTGCTTGTAGGAAGCAGGCATCTTTAACTCTCTGT  844

seq1  CTTTCTGCCTCGGAGCAGTCATCTTGTCTCTTTTCACAGCAGGGGACCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCCTCGGAGCAGTCATCTTGTCTCTTTTCACAGCAGGGGACCTC  894

seq1  AGAGCCTGTGAACCAAGTCTGCCCTTGTGTTTGTTTAAGGTTCAGTGCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGTGAACCAAGTCTGCCCTTGTGTTTGTTTAAGGTTCAGTGCTT  944

seq1  GAGCCACCATGTGACTCCTCCTCTCGCTGAGAAACCACCTCTCCCCTCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCATGTGACTCCTCCTCTCGCTGAGAAACCACCTCTCCCCTCCT  994

seq1  TCAAGACGGGCTTCCCTGTGTGATCATTCTGAGAATTCCTAAATTAATAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACGGGCTTCCCTGTGTGATCATTCTGAGAATTCCTAAATTAATAC  1044

seq1  TGAATTC  1055
      |||||||
seq2  TGAATTC  1051