BAC Information

Click to search

BAC

Clone NameB6Ng01-309H22
Chromosome17 (Build37)
Map Location 75,717,777 - 75,900,665
singlet/doubletdoublet
Overlap geneLtbp1, Rasgrp3
Upstream gene2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672, EG621988
Downstream gene2810405J04Rik, LOC668787, LOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309H22.bB6Ng01-309H22.g
ACCGA101723GA101724
length1,179944
definitionB6Ng01-309H22.b B6Ng01-309H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,899,517 - 75,900,665)(75,717,777 - 75,718,541)
sequence
gaattcatttcagaagctttggatatttattctactcagccggtatcttc
cacatttattggagtgccgatcacatagcaagcaccacataactatttgg
taacatttataatattgtcatctttggctagggcatatttatttatttat
ttatttatctatttatctatctatttatttatttattgggggtggggcgg
tgcatggctcggcatggatataccataaggataactgttgggaataagtt
ctttctttccacaatgtgggttccagagatcaaacccaggtcaccagatt
gatgacaagcatcctcacctactgagccatctcaccagcctggccagaac
attcttacagtaacacctatcaccagcagcaatctggtttgatgggtagg
cttggacaatggggctagtccctttctattttgtgcccgatatataactt
gacattggtttaagataaaagaaaaaaatactaccttcctatagaatata
tgccaggatcagagcatatctcagcaatctataatgccgacttagaattt
agataaaaatccatggtacctttgtaacttcggaagagaggtgagaatgg
gtgtctttgagtcgggaaatggagctgtgactaaggccaccaaccactgc
catcaaggtgttaaaattttttagttgaaggagtttctacaaaaacaaac
agacgaacaaaaacaccattaacactaacacatggtaagaatttttaaaa
attatcttggattttccaagttgcaggtgaatatgagaacaattttaata
acaagaatttagggagaaaacatacatcagtttaagatgaaatgaaagtt
gaattctctgaaaatacaataccagtcatttcacaataacataattaaat
gcttctaagcactgccttttaaaagtaacctgcttaatgtgaaaggaaat
attagtttgtttattaagaataatcctgtgaaacagttaatagttcaagt
gcctgtttaattgcctaacacactaaatttccctcaaatgaactttttct
tcaggaacaacttaatgaatatacgaaatccccgaatcccagaatcttgg
actatgatgaagccaactcggggcttacattgatgaacttttggatgacc
tcctgaccatgttgcgcgccaccttggtt
gaattcacatatgaaggaggagagctggactgtggatgagccaaaaaaaa
aaaaaaaaaagaggctttaaggagggagacagatacagattcaacgaagc
atgactttcaggcaaaagaagaccaaaatggaccatgttatttagcaatg
cagagtggggggaagtgaccaaagtccactgtcactttgtggaaaatgta
tttcctaattcctatgaagactttttattcacacctccacatgtgaggtt
ataaaactctatttaaaaaaaacttttttaatgattctttgtgggtttca
catcgtgcatcccaggatggattatctcctatcctctcatatctgctctt
tgtccttaaacctccccctcaaatacacacacacacacacacacacacac
acacacacacacacacacacacaaagcatagaaaacatctcatcgtggaa
gctgtagaatgtcacagtgtgtcctacaatatatcctctgtccacacaca
tcttcactagcaattcttcattgcaatgagtcatttgatcgagttccagg
cttctagtttctgtgacacctttaataatgaatcctcatcaggagtcctc
agagttatcctgttgaagccctgtgtcatggagatcctggatctttgggt
caacacatcccaatctttcacagatgataaagatttgggggtgggtctac
tcagagccttggatctgggcttgggtggtagctgaactggtcatctcact
gcctctcccttagccacaccaccagggtgagctccagcactgctccagct
tggagccacccactacccaggtaggcaggaggcaggttgagctctcctgt
tcacatgcccttctgcctgctcacccgaacccatgcctccagagccagct
caactgcactgggccaggcaagtgcaggtcactctcctgagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75899517_75900665
seq2: B6Ng01-309H22.b_48_1226 (reverse)

seq1  AACCAA----GTGCGCAACAAAGGGCA-GAAGTCATCACAAAGTTCATCA  45
      ||||||    | ||||||| | || || || ||||||  |||||||||||
seq2  AACCAAGGTGGCGCGCAAC-ATGGTCAGGAGGTCATCCAAAAGTTCATCA  49

seq1  ATGT-AGCCCAGGTTTGCCTTCATCATAATC--AGA-TCTGGG-TTTGGG  90
      |||| ||||| |  ||| |||||||||| ||  ||| |||||| || |||
seq2  ATGTAAGCCCCGAGTTGGCTTCATCATAGTCCAAGATTCTGGGATTCGGG  99

seq1  GATTCTGTATATTCATT-AGTTG-TCCTG-AGAAAA--GTCA-TTGA-GG  133
      ||||  ||||||||||| ||||| ||||| ||||||   ||| |||| ||
seq2  GATTTCGTATATTCATTAAGTTGTTCCTGAAGAAAAAGTTCATTTGAGGG  149

seq1  AAATT---AGTGTTA-GCAATAAAACA-GCAC-TGGACTATTAAACTG-T  176
      |||||    |||||| ||||| ||||| |||| || |||||| ||||| |
seq2  AAATTTAGTGTGTTAGGCAATTAAACAGGCACTTGAACTATT-AACTGTT  198

seq1  TCACAG----ATATCTAATAAACAAACT-ATA-TTCCTTTCACAT--AGC  218
      ||||||    ||   ||||||||||||| ||| ||||||||||||  |||
seq2  TCACAGGATTATTCTTAATAAACAAACTAATATTTCCTTTCACATTAAGC  248

seq1  AGGTTACTTTTAAAAGGCAGTGCTTAGAAGCATTTAATTATGTTAATGTG  268
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGTTACTTTTAAAAGGCAGTGCTTAGAAGCATTTAATTATGTTATTGTG  298

seq1  AAATGACTGGTATTGTATTTTCAGAGAATTCAACTTTCATTTCATCTTAA  318
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTGGTATTGTATTTTCAGAGAATTCAACTTTCATTTCATCTTAA  348

seq1  ACTGATGTATGTTTTCTCCCTAAATTCTTGTTATTAAAATTGTTCTCATA  368
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTATGTTTTCTCCCTAAATTCTTGTTATTAAAATTGTTCTCATA  398

seq1  TTCACCTGCAACTTGGAAAATCCAAGATAATTTTTAAAAATTCTTACCAT  418
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGCAACTTGGAAAATCCAAGATAATTTTTAAAAATTCTTACCAT  448

seq1  GTGTTAGTGTTAATGGTGTTTTTGTTCGTCTGTTTGTTTTTGTAGAAACT  468
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTGTTAATGGTGTTTTTGTTCGTCTGTTTGTTTTTGTAGAAACT  498

seq1  CCTTCAACTAAAAAATTTTAACACCTTGATGGCAGTGGTTGGTGGCCTTA  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACTAAAAAATTTTAACACCTTGATGGCAGTGGTTGGTGGCCTTA  548

seq1  GTCACAGCTCCATTTCCCGACTCAAAGACACCCATTCTCACCTCTCTTCC  568
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCTCCATTTCCCGACTCAAAGACACCCATTCTCACCTCTCTTCC  598

seq1  GAAGTTACAAAGGTACCATGGATTTTTATCTAAATTCTAAGTCGGCATTA  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACAAAGGTACCATGGATTTTTATCTAAATTCTAAGTCGGCATTA  648

seq1  TAGATTGCTGAGATATGCTCTGATCCTGGCATATATTCTATAGGAAGGTA  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGCTGAGATATGCTCTGATCCTGGCATATATTCTATAGGAAGGTA  698

seq1  GTATTTTTTTCTTTTATCTTAAACCAATGTCAAGTTATATATCGGGCACA  718
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTTCTTTTATCTTAAACCAATGTCAAGTTATATATCGGGCACA  748

seq1  AAATAGAAAGGGACTAGCCCCATTGTCCAAGCCTACCCATCAAACCAGAT  768
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAAGGGACTAGCCCCATTGTCCAAGCCTACCCATCAAACCAGAT  798

seq1  TGCTGCTGGTGATAGGTGTTACTGTAAGAATGTTCTGGCCAGGCTGGTGA  818
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGGTGATAGGTGTTACTGTAAGAATGTTCTGGCCAGGCTGGTGA  848

seq1  GATGGCTCAGTAGGTGAGGATGCTTGTCATCAATCTGGTGACCTGGGTTT  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGTAGGTGAGGATGCTTGTCATCAATCTGGTGACCTGGGTTT  898

seq1  GATCTCTGGAACCCACATTGTGGAAAGAAAGAACTTATTCCCAACAGTTA  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGGAACCCACATTGTGGAAAGAAAGAACTTATTCCCAACAGTTA  948

seq1  TCCTTATGGTATATCCATGCCGAGCCATGCACCGCCCCACCCCCAATAAA  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGGTATATCCATGCCGAGCCATGCACCGCCCCACCCCCAATAAA  998

seq1  TAAATAAATAGATAGATAAATAGATAAATAAATAAATAAATAAATATGCC  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAGATAGATAAATAGATAAATAAATAAATAAATAAATATGCC  1048

seq1  CTAGCCAAAGATGACAATATTATAAATGTTACCAAATAGTTATGTGGTGC  1068
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAAGATGACAATATTATAAATGTTACCAAATAGTTATGTGGTGC  1098

seq1  TTGCTATGTGATCGGCACTCCAATAAATGTGGAAGATACCGGCTGAGTAG  1118
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATGTGATCGGCACTCCAATAAATGTGGAAGATACCGGCTGAGTAG  1148

seq1  AATAAATATCCAAAGCTTCTGAAATGAATTC  1149
      |||||||||||||||||||||||||||||||
seq2  AATAAATATCCAAAGCTTCTGAAATGAATTC  1179

seq1: chr17_75717777_75718541
seq2: B6Ng01-309H22.g_67_831

seq1  GAATTCACATATGAAGGAGGAGAGCTGGACTGTGGATGAGCCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATGAAGGAGGAGAGCTGGACTGTGGATGAGCCAAAAAAAA  50

seq1  AAAAAAAAAAGAGGCTTTAAGGAGGGAGACAGATACAGATTCAACGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAGGCTTTAAGGAGGGAGACAGATACAGATTCAACGAAGC  100

seq1  ATGACTTTCAGGCAAAAGAAGACCAAAATGGACCATGTTATTTAGCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTCAGGCAAAAGAAGACCAAAATGGACCATGTTATTTAGCAATG  150

seq1  CAGAGTGGGGGGAAGTGACCAAAGTCCACTGTCACTTTGTGGAAAATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGGGGGAAGTGACCAAAGTCCACTGTCACTTTGTGGAAAATGTA  200

seq1  TTTCCTAATTCCTATGAAGACTTTTTATTCACACCTCCACATGTGAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAATTCCTATGAAGACTTTTTATTCACACCTCCACATGTGAGGTT  250

seq1  ATAAAACTCTATTTAAAAAAAACTTTTTTAATGATTCTTTGTGGGTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTCTATTTAAAAAAAACTTTTTTAATGATTCTTTGTGGGTTTCA  300

seq1  CATCGTGCATCCCAGGATGGATTATCTCCTATCCTCTCATATCTGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGCATCCCAGGATGGATTATCTCCTATCCTCTCATATCTGCTCTT  350

seq1  TGTCCTTAAACCTCCCCCTCAAATACACACACACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTAAACCTCCCCCTCAAATACACACACACACACACACACACACAC  400

seq1  ACACACACACACACACACACACAAAGCATAGAAAACATCTCATCGTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACAAAGCATAGAAAACATCTCATCGTGGAA  450

seq1  GCTGTAGAATGTCACAGTGTGTCCTACAATATATCCTCTGTCCACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGAATGTCACAGTGTGTCCTACAATATATCCTCTGTCCACACACA  500

seq1  TCTTCACTAGCAATTCTTCATTGCAATGAGTCATTTGATCGAGTTCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTAGCAATTCTTCATTGCAATGAGTCATTTGATCGAGTTCCAGG  550

seq1  CTTCTAGTTTCTGTGACACCTTTAATAATGAATCCTCATCAGGAGTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTTTCTGTGACACCTTTAATAATGAATCCTCATCAGGAGTCCTC  600

seq1  AGAGTTATCCTGTTGAAGCCCTGTGTCATGGAGATCCTGGATCTTTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTATCCTGTTGAAGCCCTGTGTCATGGAGATCCTGGATCTTTGGGT  650

seq1  CAACACATCCCAATCTTTCACAGATGATAAAGATTTGGGGGTGGGTCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATCCCAATCTTTCACAGATGATAAAGATTTGGGGGTGGGTCTAC  700

seq1  TCAGAGCCTTGGATCTGGGCTTGGGTGGTAGCTGAACTGGTCATCTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCTTGGATCTGGGCTTGGGTGGTAGCTGAACTGGTCATCTCACT  750

seq1  GCCTCTCCCTTAGCC  765
      |||||||||||||||
seq2  GCCTCTCCCTTAGCC  765