BAC Information

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BAC

Clone NameB6Ng01-311C02
Chromosome17 (Build37)
Map Location 13,339,574 - 13,430,335
singlet/doubletdoublet
Overlap geneSmok2a, Smok2b
Upstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a
Downstream geneLOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311C02.bB6Ng01-311C02.g
ACCGA102924GA102925
length1,178939
definitionB6Ng01-311C02.b B6Ng01-311C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,419,801 - 13,430,335)(13,339,574 - 13,340,516)
sequence
gaattcacagagttaccgtgcttgcctctgtggaagtgggtcaagctgat
ggtatctaatattctctctggtccttctgatcatgctgctgggtccagaa
ggacccaaagtccacacccagcttctagacttccccacttcgggtacctg
aaagcttggtcccttcaaaggcacttttaatgatctggtggtttggggtg
tgaagttgttctacctgggactttggaacaccacaggaacaattttccta
tgtaaaaaagaggcaggataatctccgaggtcatcttttacaaacatcta
ttttattctcagagcaggagtctgattatgaccctggataggcagagggg
cttctgtctctaccagctttggacaggctttcagcccctgctcggaatgg
tgatcccggagaccatctgggaattcatcatttgctttcttccccctggc
tggactctgggcactgagtgaagcacgctgaacctggaacatgatgcctt
tccacaaggttcctttttgcaggtccatgtctatacatgggtgctttcca
atactataactgtcgaatcatagcatccggcatcctctggtgatcttcta
aaatgcaacagcacacatgagagggactctgagaacctcagctacacagg
gcatctctccatctggggttaccctgtttcacactgctcccccaagttgc
ctcctcctgtctgaacctcttccccccatctcctagctcccaccacatac
caccctctcctccctcagcatctcctcctctttcttctcctacttcctcc
ccctagcatggtcctcctccttgttcaacgtgcaggatacacacaggaga
taacttctgggatgctagatctgttggcaggttcgatttaaccatcatcc
cacggtgtctagacctagcttccccatgcatcacaccatatacatataca
taagtataatctgccagttgacacagacatgagtacatagatacattcaa
atacagaaatgtacctgggccgtgccgatgctcgtctcctgacaaccctt
ctgtgtctatttttttgggaagactctactgtgccccagtgagaatgtct
ctttggatggatacagcaccagagcttcactaataccaagttcgaatctg
ctagtccaagcccattgattgccctctg
gaattccatgaagtcattaattcatctgaacagcatcatctcaagaacgt
tcatctttatgctgatcttcaggaaacttgtccaacgaagtgggctatca
cccaggaagcaaccacaccaggctctaggcagtgagggtctcccagtgtc
cattcacaccacgtcaaataaaggaggaatgtggctgtcacctgcaggag
aaaacacatcagtagcaagaagcaatgctgaggcaaggctcctgggactg
cacccactgcggctgagcaagacagtgggacatctcgggggagttcactt
gtctgctgtagctcttcctgagtggcacccaccattgacctatgcctccc
tgctagtcacccttccaagtgactggagagttgctccattctgctttggt
taagatgtaaagcccaaagaatgtcaaacttctagccagagtttgcctgc
ttctgtgcctcaaattcatgctgaagtcattacccccaagtcaatgctat
ttggaagttcaggtttaggggagtgtcttagctagtgacctattgatgtg
aagagatgccataaccacagcaactcttatttaaaagagagagagagaga
gagagagagagagagagagagagagagagagagagagagcatttaattgg
ggcttgcttatattttcataggtttagcccattttcatcatggagggggg
aatatggcaacatgcaggaagacatgatgctggagaagcagctgagagtt
ctagatccagatgtgcagcagcaggaagtgggaggtgctaggcttgcctt
gggatttctaaacttcaaaatccatcccccccagtggcacatttcctcca
acaagactacaactccctaaatgtttcaatcgtgcctctcccagttgacc
aagcattcaatatgtgaagccttctgggacgttctcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_13419801_13430335
seq2: B6Ng01-311C02.b_45_1222 (reverse)

seq1  CAGAGGCATCAAGGGCTGGACTAGCAAGATAGGAAATGCGATGAGGAAGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTTGCTGTATCCCATCAAATGAGACATCTCACCTGGGGCAGAGGAGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTCCCCCAAAAAATAAGACACAGGAAGGGTGTCAGGAGAACGAGCATT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CGGCTCGGCACAGGTACATTTTTGTATTTGAATGTATCTATGTTACTCAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTGTGTCAACTGGCAGATTATACTTATGAATATGTATATGTATATGGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCAATGCATGGTGAAGCTAGGTCTAGACACCTTGGGATAATGGTTAAATT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GAACCTGCCAACATATCTAGCATCCCAGAAGGTATCTCCTGTGCGTATCC  350
                                                        
seq2  --------------------------------------------------  0

seq1  TGCATGATGAACAAGAAGGAGAACTGACCATGCTAGGGAGAGGAAGTAGG  400
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAGGAAGAGGAGGAGATGCTGAGGGAGGAGAGGGTGGTATTTGGTGGG  450
                                                        
seq2  --------------------------------------------------  0

seq1  AAATAGTAGATGGGGGGAAGAGGTTCAGACAGGAGGAGGCAATTTGGGGG  500
                                                        
seq2  --------------------------------------------------  0

seq1  AGCAGTGTGAAACAGGGTAACCCCAGCTGGAGAGATGCCCTGTGCAGCTG  550
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTTCTCAGAGTCCCTCTCACATGTGCTTTTGCATTTTAGAAGATCACT  600
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGGATGCCGGATGCTATGATTCAACAGTTATAGTATTGGAAAGGACCC  650
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTATAGACATGGACCTGCAAAAGGGAACCTTGTGGAAAGGCATCATGT  700
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGGGTCCAGCCAGAGGGAAGAAAGCAAATGATGAAATCCCAGATGGTC  750
                                                        
seq2  --------------------------------------------------  0

seq1  TCCGGGATCACCATTCCGAGCAGGGGCTGAAAGCCTGTCCAAAGCTGGTA  800
                                                        
seq2  --------------------------------------------------  0

seq1  GAGACAAAAGCCCCTCTGCCTACCCAGGGTCATAATCAGACTCCTGCTCT  850
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAATAAAATAGATGTTTGTGAAAGATGACCTCGGAGGTTTTCCTGCCT  900
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTTTACATAGGAAAAATGTTCCTGTGGTGTTCAAAAGCCCCAGGTAG  950
                                                        
seq2  --------------------------------------------------  0

seq1  AATAACTTCACACCCCAAACCACCAGATCATTAAAAGTGCCTTTGAAGGG  1000
                                                        
seq2  --------------------------------------------------  0

seq1  ACCAAGCTTTCAGGTACCTGAAGTGGGGGAATGTAGAAGCTGGGTGTGGA  1050
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTGGGTACTTCTGGACCCAGCAGCATGATCAGAAGGACCAGAGAGAAC  1100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTAGATACCATCAGCTTGACCCACTTACACAGAGGCAAGCCCAGTCAAC  1150
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTGAATTCCTGCAGATGTGGCATGCGTTGCATCCCAGGGTCTCTGCCT  1200
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTAAGATCAGAGAGCCTGGAGTTAGCTAAATATCAGTGTCCCTTGGCC  1250
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAGGGAGAAGGGAGTTTGGATTCCAGCCCTAGCCTAGTCCTGTCATAA  1300
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGTCCCCCTCAAATGTGGAAAGCAAGGTCTACATGATGTTCACAGCTC  1350
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTGGCCTGAAACTGTTCTGTGATTGATACTACAAACCAGGAAGCAGGG  1400
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTGAAGTTGAGATCACTGACTCAGGCTAGGGAGGGCTCGTGGGCACCT  1450
                                                        
seq2  --------------------------------------------------  0

seq1  GATCTCAACTGCAATGTCAGAAGCTGAGCCACAGTGACTAGTGGTGGCAG  1500
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTCTTTTCTGCTCTCAGGCCTGGCAATGAAGTCCACATATGAGGATC  1550
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCCTCCCAGTCGTAATGTCTGCAGATATGAGGTTCCTCAACAGTTGAC  1600
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAAACTCCAGAAGAGAGTCTTCAAAAGGAAAGAGCTACACATTGTACT  1650
                                                        
seq2  --------------------------------------------------  0

seq1  CTGAAAAGCAGAGGCCCTTTCAGAGTTTGAGCAAATCATCGCTCAATAGT  1700
                                                        
seq2  --------------------------------------------------  0

seq1  TAGATTCCGAGTACACTGGGTGCTCAGGAATAACACAGCAGCATGGGTTC  1750
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGAGCTGACTGTGGTTCAGAGTCTGTTTCAAGTGTGTCAGCAGCACAG  1800
                                                        
seq2  --------------------------------------------------  0

seq1  CTAATCTGTTCATGGTGTCCACAGAGCTTCTGGTCCTTGCATGTGCCTGC  1850
                                                        
seq2  --------------------------------------------------  0

seq1  TCCACCTTTGGACCTTAGAATGTAAAGTGAGCCCTACATGCAGCATGGAC  1900
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGTTTTGTATACATCATGCCAACCTCTGTGTTTGATGATGGGGCGGGA  1950
                                                        
seq2  --------------------------------------------------  0

seq1  GTCGGGGGTATGTGGTGGGGGAGGTGAGAGAAAGGAGAGAGAGAGTTGGG  2000
                                                        
seq2  --------------------------------------------------  0

seq1  TAGAGAAAGGGAAGGAAGGAGGGAGGGGAGAGATAAAAGGGAAAAGCTTG  2050
                                                        
seq2  --------------------------------------------------  0

seq1  TATGTACATGGTCATGGATATGTCCCACCATGTGTGTGGAGGTTAGAGGA  2100
                                                        
seq2  --------------------------------------------------  0

seq1  CATTTTTTTCTCAGATTTTACCTTCTACTTTGTTTGAAACTAGGTGTGTG  2150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTGAGAGTACATATGCCAAGGTATCTGGCCCACAAGTTCCCAGACATT  2200
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTATCTCTAATGCTTTCCCTGCTTCCTAGGAGCTGTGATATTGCAAG  2250
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGCCCAGTGTCCACATGCATTCAATCTCAGGCCCTCCCTCTTTGCA  2300
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCAGGTGTTCTAACCACTTGTCTATCCCCTAAGGCCCCTCTTATGTTT  2350
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATGAGAATCCAAAACCTTGGAAATTATGAGAAACACCTCTTTCTGTC  2400
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCTCACAGGTGGTAATAAGCTGCATTGTTATATTTCATGAGCAGAGTT  2450
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGTACAGAAATCACCCCTCAAACCACTCAGCCATCTCAGTCAAGCAGG  2500
                                                        
seq2  --------------------------------------------------  0

seq1  GATAGTTTATTGAACATATACCCTGGGACTGATTGATCAGGGATGCAGAT  2550
                                                        
seq2  --------------------------------------------------  0

seq1  CAGACTCAGAAGTTTAGACTGCAACCCTGTTTCCCAAGGGTTGCTTATAA  2600
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGCAAAAACCACAGGAGCTCATGGCAACCATAAAAGCTCACACACAGG  2650
                                                        
seq2  --------------------------------------------------  0

seq1  TGCAGGCAGTCTTGAAAGGCAGTTGGGTGGCTGGTTCAAGTCCAACCTTA  2700
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTGCTAACTGTACAAAGCAATTCTAACTGACCTTAGTTATTATGATT  2750
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCCTAAAGGAGGGCAAGGGTCGGGGGAGTTTGCAAGAACACCAAAGCA  2800
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAGCTTAATGGGATATGCAGTTAATGGTTAGCTGGGCATGAGAAAGGT  2850
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCTGTAATAATTGAAGATGGCTGGCTACAGGTATAAAATGAAATGGCT  2900
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGTACTGTCAGAAAGGCAGCAGCCACCTAGGACTTAATGAGTAGGACC  2950
                                                        
seq2  --------------------------------------------------  0

seq1  TTTATTATTATTATTATTTTTTTTAATATTAAGTGGTAGCATCATCCTGG  3000
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCATCAGTTGGAATGCAAAGGTGACACACAGAGTGAAGACATGAGGAC  3050
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAAAGCAGGAGGCACAGCAAACATCAAACCAGAGACCTAAGGACATCA  3100
                                                        
seq2  --------------------------------------------------  0

seq1  GCACGGCCTAGAGGTTTTGATTTCTAAAAGCCTAATGTCAGTCTCCATAG  3150
                                                        
seq2  --------------------------------------------------  0

seq1  CCCACTTAAGCCAGAGCCTTGAGTCCCTCTCAGCCCTGCCAGGACAGGTC  3200
                                                        
seq2  --------------------------------------------------  0

seq1  CATATATGACCACATGAGGAGTGACTATGATGCGGCCCAGCCAGCAGGTT  3250
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGCTGTGGCCACACCTAGATTTCTTTGAGTGTGTTGAGAGAAGTTGGT  3300
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGTTGGTGGAGTTTGGTGGAGTTGGTGGAGTTGGTGGAGTTGGTGGAG  3350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGGTGGAGTTGGTGGAGTTGGTGGTGCCCTTTGCAATTTCATTGTATC  3400
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTGAGCTGTGTGAGGATTTTGTGTTTGATTGGTTTGTGTATGAGCTTG  3450
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGATCAGTGTGTGTTTGGG  3500
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAGCTTGAGGGTGTGAGTTGTGTTTTAAGTTTATTTGCGTGTGAGTAC  3550
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTGGGTTTGTGTGTGTGTCTGTGTGTGTTTAACCGTGGGTGACTGTAA  3600
                                                        
seq2  --------------------------------------------------  0

seq1  GTGCACGTGTGTTTGTGCGTGAGTTTTAAGACTGTGTGTGTGCACAAGAG  3650
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGTGTAGGTGCACGTGTGGTAGGTGTGAGAACAACTGTTGTGTTTAGG  3700
                                                        
seq2  --------------------------------------------------  0

seq1  CCATCAGTCAGCTTGGCCGTTGTTTCTAAGGTAAGCCATCTACTTTATTT  3750
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTAAGACTTTTTTATTCTTATTTATTCACTTTACATTACTATCATAGC  3800
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCTCCATCCTGTTCATCTATTTCCACCTCACATGCCCCTCCTCCTATA  3850
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCCCTCTCCTTCTCAGAGAAAGGGAGGCTGACTCCTTAGGTGCCACCA  3900
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCCTGGGACATCTAGTACTCGCAGGACTGAGCCTATCCTATCACACTG  3950
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCCAGAAAAGACAGCCCAGCTAAGGGAAAGATATTCAAAGGCAGGTAA  4000
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGTCAGAGACAGACTCTGCTCCAGTTGCTATGGGACCCAAATGAAGA  4050
                                                        
seq2  --------------------------------------------------  0

seq1  CTATGCTGTACATCTACTACAAATACATAGGGGGCCTAGGCCCAGCCCTG  4100
                                                        
seq2  --------------------------------------------------  0

seq1  CATGTTCTTTGGTTGGTGGTTCAGTCTCTGTGAGCTTCCATGTGCCCAAG  4150
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGTTGACTCTGTAGGTCTTCTTGTGGTGTCCTTGACCCCTCTGGCTTG  4200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGTTCTATCCTCACTCTTCCACAAGACTCCCCAAGATCCACCTAGTG  4250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGACTCTGGATGTCTGCATCTGTGTCCATCAGCTGCTAGATGAAGCCT  4300
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGAAGACAGTTAGGCCCTGTCTGCCAGTCAGAGCATCATTAACAGTG  4350
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCTCCCATCGAGTGGGTCTCAAGTTGGGCCCGTTATTCTTGGCCGTT  4400
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTCAATCTCTGCTCCATCTTTATCCCTGAGCAACTTATAGGTTGGACA  4450
                                                        
seq2  --------------------------------------------------  0

seq1  AATTTTCGGTTGAAGGTTTTGTGGGTTGGTTAGTGCCTCCCTTCCCCTAC  4500
                                                        
seq2  --------------------------------------------------  0

seq1  TGGATATGCTGCCTGGCTACAGGAGATGGCCGCTTCAGTCTCTCCAACTC  4550
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCTGCTAGAAGTTCTCAGCTAGCATTACTCTCATAGGCTCCCTAGAGT  4600
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCCCAATCCCATCCCTGCCAAGGGTCCAACTCATCCCAGATATACAT  4650
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCCACATCCACCCTTCTTCTGCCCCTCCCCCTGCTCTCCGAACACCTA  4700
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCTATCCCTGTTCCCTCACACACACCTCTCCCCCTCAGTTCCCTCCTT  4750
                                                        
seq2  --------------------------------------------------  0

seq1  CCATCCAACTCTATTTCATTTCCCCTTTTGAATGGGATTCAAGCATGCTC  4800
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTGGGTCATCCTTGTTATTTAGCTTCTTTGGGTGTGTTGATTATAGCA  4850
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCTATTCTGTACTTTGTAGCTAACATCCACTTATAAGTGAGCACATAC  4900
                                                        
seq2  --------------------------------------------------  0

seq1  CATGGTTGTCTTTCTGGGTCTCGGTTACCTCACTCAGGATATTTTCAAGT  4950
                                                        
seq2  --------------------------------------------------  0

seq1  TTCATCCATTGGCCTGCCAATTGCATGATAGCTGTGTTTTTCATGGCTGA  5000
                                                        
seq2  --------------------------------------------------  0

seq1  ATAGTATTCCATTGTGTAATTGAACCACATTTTCTTTATCCATTCTTCAG  5050
                                                        
seq2  --------------------------------------------------  0

seq1  TTGAGGGACATCTGGGTTGTTTCAAGTTTCTGGCTATCATGAATAAGGCT  5100
                                                        
seq2  --------------------------------------------------  0

seq1  GAACATACTTGAGGAAGTTTCTTGTTTTGGGTATATGTCTGGGAGTGGTA  5150
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCTGGGTCTTTGAGGTACAACTATTCCTGATTTTCTAAGAAAGTGCCA  5200
                                                        
seq2  --------------------------------------------------  0

seq1  AATTGATTTCCAGAGTAGTTGTACAATTTGTGCTCCCACCAGCAATGGAG  5250
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAGTTACCCTTGCTTCACATCCTCACCAGCATGTGATATCACTTGGGT  5300
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAGATCCTAGCCATTCTGATGGGTGTAAGATGGAATTTCAGAATCATT  5350
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATTTGTATTTCTCTGATGACTAAATACATTGAACATTTTCTTAAGTG  5400
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTCAGCCATTCAAGATTCCTCAGTTGTGGATTCTCTTATTTAGTTCT  5450
                                                        
seq2  --------------------------------------------------  0

seq1  TCACCCAATTTTTTTGATTGGGTTTGTTTGGAATTTTTCTTTGTTTCTTT  5500
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTTTTTTTTTTTTTTTACGTTCCTTCCTCTTGAGTTCTCTATATATTT  5550
                                                        
seq2  --------------------------------------------------  0

seq1  TGGATATCAGTCCTCTATCAGCTGTAGGACAGTGAAGACTCTTTACCACT  5600
                                                        
seq2  --------------------------------------------------  0

seq1  CTATAGGCTGTTTTGTCCTAATGACAATGTCCTTTGCTTACAGAAGCTTG  5650
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTTTCATGAGGTCCCACTTATTGTTGATCTTAGTGCCTGATCCATTGG  5700
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTCTGTTCAGGAAGTTGTCTCCTGGGCTGATGAGTTCAAGGCTATGCC  5750
                                                        
seq2  --------------------------------------------------  0

seq1  ACACTTTCTGTCCTATTAGACCTTGTGTGTCTGATTTTATGTTGAGGTCT  5800
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATCCACTTCAAAATCTGAAATTAAAATTACTCAGTTGACTGTTTTTA  5850
                                                        
seq2  --------------------------------------------------  0

seq1  CACAGGATTTCTAAAGACTGAAAGTTGGTTCTTGTGTTTTGCTAAACTAT  5900
                                                        
seq2  --------------------------------------------------  0

seq1  CACCCAGTCTGTGGATATTGGAGGGTTTTGTTTTGTTTTGGTTTTTTGTT  5950
                                                        
seq2  --------------------------------------------------  0

seq1  TATCTTTTTTTCCTGAGACAGGGTTTTTTTTAATGTGTAGCCCTGGGTGT  6000
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCGAACTTGCTCTGTAGACCAGGCTGGCCTTAAACTGAGAGATCTACC  6050
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCTCTGCTTCCTCAGTCCTGGGACTAAAGTTGTGTGCCACCACCCTGG  6100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTTATTTGAGTCTTACCATTATGTGCTTTGGATTTTATTTTCTAGTTT  6150
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTGCTTGGCTGGTTTTTGGCTTTCAGTGTTAATTGAGGGTTTTGTTTG  6200
                                                        
seq2  --------------------------------------------------  0

seq1  AAATTCTCTTTTTTTTTATTATGTTTAACATTTGGTGGAATTTTGTGCCA  6250
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTAGCTTTCTGACTTTTGTTCTTATAGATTTTCTTATTCATTGTAGT  6300
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGTTGTTTCTGTTTTGGATTTGTTTGGGGCTTTAATATTTTATTTTCT  6350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTTTTGTTTTCTTTTGTTTTATATTTTGAGACAGGGTTTCTCTGTGT  6400
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCCTGGCTGTTCTGGAACTGACTCTGAAGGACAGGCTGGCCTCAAACT  6450
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGTTGGGC  6500
                                                        
seq2  --------------------------------------------------  0

seq1  CACCACTGCCCAGCTTTTTTATGGTTTTTAAATGTCATAATATTTTTTTG  6550
                                                        
seq2  --------------------------------------------------  0

seq1  AGAACTTCAGATATCCATTAAATATATCTGGATCCTAGTCAACCCCTGCC  6600
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCCTGACTCATGCCAGATGCAGCCCCACAGTCACTCCAACAACCCAC  6650
                                                        
seq2  --------------------------------------------------  0

seq1  AAAATTCATGTCCTATTTTAATAACCTGCTGTCATATGTTCATGAGTGTG  6700
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGCATCCACTGGAGTGGTTGATCTACCAGGGCTACATCCTTCAGGAGG  6750
                                                        
seq2  --------------------------------------------------  0

seq1  AATGACTCTTTTCTGGATGTCATCAACTGTCAATGTTTCTGGGATGGGTT  6800
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCAGGGTGCAATTCTTGATTTGGGGCAGATTTCATGCTGGAAGCCAGA  6850
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGTTGTGAATTCATGAGTGTACTGGTCTTGTCCTGTCAAGAAGATAAT  6900
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTGCTCTGGCCCTTCCCAATGGCTGATTCTTACAATCTCTCTATTCC  6950
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTTTCTGTGATAGTCCCTGAGCCCTGGAGGGAGAAAAGGAAGGAGGGA  7000
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGAAAAGGAGAAGAGGGTACAATGTAGACACCCCGGTTTTTGAACAC  7050
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTTAACATTTACTTTCTAGTCTTTGACCAGTTGTGAGTTTCTGTATC  7100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGCACAAGGAAATTTCTCTGAGATATGAGAGTTACTAATAAATGTAAT  7150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCCTGAGATATGAGAGTTGTACTAATAAATACAGTGGCCACACCAGCT  7200
                                                        
seq2  --------------------------------------------------  0

seq1  TATATCCTCCCATGGACAACTTACATGAGTGTTTCCATCCCCCACATCCA  7250
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTTACCAGCATTGGTGCCTTAGCCATCTGATTGTAGTAAGATAAAATC  7300
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAACTAATATTAGTTTTCATCTCCCTGAGGGCCATATATATATATACA  7350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTCAGCCGTTTTTAAGTCTTTTGAGAAAACCCTCTTCAGATCCCTAT  7400
                                                        
seq2  --------------------------------------------------  0

seq1  TCCAATTATTCCCAATTATCTATTGGGTTCTTTTCTCCGTGATTTTTTTT  7450
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTAGGTTCTATGTGTATTCTAGAAGTTTTGATGAGTTTGTTATAGT  7500
                                                        
seq2  --------------------------------------------------  0

seq1  GATCATTTATACATTTCCTTGTACATTTTTTTTGTTGTTGTTTTTTGAGA  7550
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACC  7600
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCTGGCCCCGAACTCAGAAATCCACCTGCCTCTGCCTCCTGTGTGCTG  7650
                                                        
seq2  --------------------------------------------------  0

seq1  GGATTAAAGGCGTGTGCCACCACATGTGGCTCCTTATACATTTTTATTCT  7700
                                                        
seq2  --------------------------------------------------  0

seq1  TACACACATAGAAATATTTCTTTTTAGTGCTGCTGAGATGTGCCCCTCTC  7750
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTAGTTACTTGCAGCTAGGTATTTTAATTTAAATTTTAACTTTATGTG  7800
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTTTTGCTTTTCTGGGTTTTTGCTGTTGTTATTTTTTGTTGGGTTTTA  7850
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTCTGTTTTTCTTATTTTTCACTATTTTAATTTTTATCTTAGCTTTC  7900
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTTCCCTTTATTTCTTCCCCCACCCCCTTAGGTAGCATTTATACTTT  7950
                                                        
seq2  --------------------------------------------------  0

seq1  GTTACCTCAAGTGGGCTCTGGGAGTCAACAGAAGTCAGGAAAGCTCATAT  8000
                                                        
seq2  --------------------------------------------------  0

seq1  CCAAGCCCGCTATCTCTGACATGGAAAATTTTCATGCTCAATACGTGATG  8050
                                                        
seq2  --------------------------------------------------  0

seq1  CTAGAGACTATCGGACATGGAGGCTGCTCCAAGGTGATGCTGGCCCGGCA  8100
                                                        
seq2  --------------------------------------------------  0

seq1  TCGCCTCACAGGCTCCCATGTGGCTGTCAAAATGATTCGAAAGAGTGAGT  8150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTGGTGCAATCCTGTCATGTCTGAGGTAGAGTTACTGATGATGGCCGAT  8200
                                                        
seq2  --------------------------------------------------  0

seq1  CATCCGAATATCATCTCTCTCCTTCAAGTCATTGAGACCAAGAAGAAAGT  8250
                                                        
seq2  --------------------------------------------------  0

seq1  ATACCTCATTATGGAGTTGTGTGAGGGTAAATCACTTTACCAACACATCA  8300
                                                        
seq2  --------------------------------------------------  0

seq1  GAAACGCTGGCTACCTGCAGGAGGATGAAGCACGAGCATTATTCAAGCAG  8350
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTTAAGTGCTATGAACTACTGCCACAACCAGGGTATAGTTCACAGGGA  8400
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGAAACCTGACAATATTATGGTAGAAAAAGATGGAAAAGTGAAGATCA  8450
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATTTTGGACTCGGAACCCAAGTGAAGCCAGGGCAAAAACTAAACTTA  8500
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTGTGGGACTTACCCATTTAGTGCTCCTGAGGTGCTCCTTAGCAGACC  8550
                                                        
seq2  --------------------------------------------------  0

seq1  CTATGATGGGCCCAAGATCGATGTATGGACTCTTGGAGTTGTGTTATATT  8600
                                                        
seq2  --------------------------------------------------  0

seq1  TTATGGTAACTGGAAAGGTCCCGTTTGATGCTGCCAGCATACAAAAGCTG  8650
                                                        
seq2  --------------------------------------------------  0

seq1  GTAAGGCAAATTTTGGCAGGGAAGTATTTTGTTCCCTCTAGACTGTCTGT  8700
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGCTCCGAGATCTGATTAGTCTTTTAATGACGGCCAACCCCAAACTTA  8750
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCCACTGTTGCTGAAGTTATGGTGCATCCCTGGGTCACAGAAGGCTCA  8800
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGTGTTCCCAGATCCTTGTGAAGAACAGATGCCCCTCAAGCCAAACCC  8850
                                                        
seq2  --------------------------------------------------  0

seq1  TGCGATTGTAAAAGCAATGGGATATATCGGGTTCCAAGCTCAAGACATTG  8900
                                                        
seq2  --------------------------------------------------  0

seq1  AAGATTCTTTACGTCAGAGAAAATTCAACGAAACCATGGCATCTTATTGT  8950
                                                        
seq2  --------------------------------------------------  0

seq1  CTACTGAAAAAACAGATTCTTAAGGAATGTGACAGGCCAATCCGGGCTCA  9000
                                                        
seq2  --------------------------------------------------  0

seq1  GCCCATGAATCCATCGGTGACCCCATTCCCTTCCCTTGTTGATACTTCTA  9050
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTCCATCTTGGACTTCGGAGGAGAGAGACTGAACCCACGAGTCTCAGA  9100
                                                        
seq2  --------------------------------------------------  0

seq1  TTATCTGCCAATAGGCAAATGTCTGTCTGTGGAAGGAGTACTAGTAAGAA  9150
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAGACAGAAGATTCAGTTGGCCCAGTGTTTCCGGCAGGCCACTCCACA  9200
                                                        
seq2  --------------------------------------------------  0

seq1  CAACACACACAATGGACCACACACACACCCGTACTAGGAGTGTTCCCTGC  9250
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTACTCAATGTTTTGCACAATACAGCCAAACAGCAGTGATGACAGTAC  9300
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAGGCCACACCAGTGCCTCAGCAGAGGATAAGCCTGTCCGCAGCAGGG  9350
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGGCCCAGAGG--CATCAA-GGGC-TGGACTAGGAAGATAGGAA-ATG  9395
             ||||||   ||||| |||| ||||||| | ||||  |||  ||
seq2  -------CAGAGGGCAATCAATGGGCTTGGACTA-GCAGATTCGAACTTG  42

seq1  TGATGAG-GAAGCTCTGTTGCTGTATCCCATCAAAAGAGACA-TCTCACG  9443
        || || ||||||||| |||||||| ||||| ||||||||| |||||| 
seq2  GTATTAGTGAAGCTCTGGTGCTGTAT-CCATCCAAAGAGACATTCTCAC-  90

seq1  TGGGGCACAGTAGAGTCTCCCCAAAAAAATAAGACACAGGAAGGGTGTCA  9493
      |||||||||||||||||| ||||||||||| |||||||| | || |||||
seq2  TGGGGCACAGTAGAGTCTTCCCAAAAAAAT-AGACACAGAAGGGTTGTCA  139

seq1  GGAGAACGAGCATCCGGCACGGCCCAGGTACATTTCTGTATTTGAATGTA  9543
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAG-ACGAGCAT-CGGCACGGCCCAGGTACATTTCTGTATTTGAATGTA  187

seq1  TCTATGTTACTCATGTCTGTGTCAACTGGCAGATTATACTTATGTATATG  9593
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATG-TACTCATGTCTGTGTCAACTGGCAGATTATACTTATGTATATG  236

seq1  TATATGGTGTGATGCATGGGGAAGCTAGGTCTAGACACCGTGGGATGATG  9643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTGTGATGCATGGGGAAGCTAGGTCTAGACACCGTGGGATGATG  286

seq1  GTTAAATCGAACCTGCCAACAGATCTAGCATCCCAGAAGTTATCTCCTGT  9693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATCGAACCTGCCAACAGATCTAGCATCCCAGAAGTTATCTCCTGT  336

seq1  GTGTATCCTGCACGTTGAACAAGGAGGAGGACCATGCTAGGGGGAGGAAG  9743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCCTGCACGTTGAACAAGGAGGAGGACCATGCTAGGGGGAGGAAG  386

seq1  TAGGAGAAGAAAGAGGAGGAGATGCTGAGGGAGGAGAGGGTGGTATGTGG  9793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAAGAAAGAGGAGGAGATGCTGAGGGAGGAGAGGGTGGTATGTGG  436

seq1  TGGGAGCTAGGAGATGGGGGGAAGAGGTTCAGACAGGAGGAGGCAACTTG  9843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTAGGAGATGGGGGGAAGAGGTTCAGACAGGAGGAGGCAACTTG  486

seq1  GGGGAGCAGTGTGAAACAGGGTAACCCCAGATGGAGAGATGCCCTGTGTA  9893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCAGTGTGAAACAGGGTAACCCCAGATGGAGAGATGCCCTGTGTA  536

seq1  GCTGAGGTTCTCAGAGTCCCTCTCATGTGTGCTGTTGCATTTTAGAAGAT  9943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTTCTCAGAGTCCCTCTCATGTGTGCTGTTGCATTTTAGAAGAT  586

seq1  CACCAGAGGATGCCGGATGCTATGATTCGACAGTTATAGTATTGGAAAGC  9993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGGATGCCGGATGCTATGATTCGACAGTTATAGTATTGGAAAGC  636

seq1  ACCCATGTATAGACATGGACCTGCAAAAAGGAACCTTGTGGAAAGGCATC  10043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTATAGACATGGACCTGCAAAAAGGAACCTTGTGGAAAGGCATC  686

seq1  ATGTTCCAGGTTCAGCGTGCTTCACTCAGTGCCCAGAGTCCAGCCAGGGG  10093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCAGGTTCAGCGTGCTTCACTCAGTGCCCAGAGTCCAGCCAGGGG  736

seq1  GAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCACCATTCCG  10143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGCAAATGATGAATTCCCAGATGGTCTCCGGGATCACCATTCCG  786

seq1  AGCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTG  10193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGGCTGAAAGCCTGTCCAAAGCTGGTAGAGACAGAAGCCCCTCTG  836

seq1  CCTATCCAGGGTCATAATCAGACTCCTGCTCTGAGAATAAAATAGATGTT  10243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCAGGGTCATAATCAGACTCCTGCTCTGAGAATAAAATAGATGTT  886

seq1  TGTAAAAGATGACCTCGGAGATTATCCTGCCTCTTTTTTACATAGGAAAA  10293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAGATGACCTCGGAGATTATCCTGCCTCTTTTTTACATAGGAAAA  936

seq1  TTGTTCCTGTGGTGTTCCAAAGTCCCAGGTAGAACAACTTCACACCCCAA  10343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTGTGGTGTTCCAAAGTCCCAGGTAGAACAACTTCACACCCCAA  986

seq1  ACCACCAGATCATTAAAAGTGCCTTTGAAGGGACCAAGCTTTCAGGTACC  10393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGATCATTAAAAGTGCCTTTGAAGGGACCAAGCTTTCAGGTACC  1036

seq1  CGAAGTGGGGAAGTCTAGAAGCTGGGTGTGGACTTTGGGTCCTTCTGGAC  10443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGGGGAAGTCTAGAAGCTGGGTGTGGACTTTGGGTCCTTCTGGAC  1086

seq1  CCAGCAGCATGATCAGAAGGACCAGAGAGAATATTAGATACCATCAGCTT  10493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCATGATCAGAAGGACCAGAGAGAATATTAGATACCATCAGCTT  1136

seq1  GACCCACTTCCACAGAGGCAAGCACGGTAACTCTGTGAATTC  10535
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTTCCACAGAGGCAAGCACGGTAACTCTGTGAATTC  1178

seq1: chr17_13339574_13340516
seq2: B6Ng01-311C02.g_68_1006

seq1  GAATTCCATGAAGTCATTAATTCATCTGAACAGCATCATCTCAAGAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAATTCCATGAAGTCATTAATTCATCTGAACAGCATCATCTCAAGAACGT  50

seq1  TCATCTTCATGCTGATCTGCAGGAAACTTGCCCAACGGAGTGGGCTATCA  100
      ||||||| |||||||||| ||||||||||| |||||| ||||||||||||
seq2  TCATCTTTATGCTGATCTTCAGGAAACTTGTCCAACGAAGTGGGCTATCA  100

seq1  CCCAGGAAGCAACCACACCAGGCTCTAGGCAGTGAGGGTCTCCCAGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAAGCAACCACACCAGGCTCTAGGCAGTGAGGGTCTCCCAGTGTC  150

seq1  CATTCACCCCATGTCAAATAAAGGAGGAGTGTGGCTGTCACCTGCAGGAG  200
      ||||||| ||| |||||||||||||||| |||||||||||||||||||||
seq2  CATTCACACCACGTCAAATAAAGGAGGAATGTGGCTGTCACCTGCAGGAG  200

seq1  AAAACACATCAGTAGCAAGAAGCAATGCTGAGGCAAGGCTCCTGGGGCTG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAACACATCAGTAGCAAGAAGCAATGCTGAGGCAAGGCTCCTGGGACTG  250

seq1  CACCCACTGCGGCTGAGCTAGATAGTGGGACATCTCGGGGGAGTTCACTT  300
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  CACCCACTGCGGCTGAGCAAGACAGTGGGACATCTCGGGGGAGTTCACTT  300

seq1  GTCTGCTGTAGCTCTTCCTGAGTGGCACCCACCATTGACCTATGCCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGTAGCTCTTCCTGAGTGGCACCCACCATTGACCTATGCCTCCC  350

seq1  TGCTAGTCACCCTTCCGAGTGACTGGAGAGTTGCTCCATTCTGCTTTGGT  400
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGCTAGTCACCCTTCCAAGTGACTGGAGAGTTGCTCCATTCTGCTTTGGT  400

seq1  TAAGATGTAAAGCCCAAAGAATGTCAAACTTCTAGCCAGAGTTTGCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTAAAGCCCAAAGAATGTCAAACTTCTAGCCAGAGTTTGCCTGC  450

seq1  TTCTGTGCCTCAAATTCATGCTGAAGTCATTACCCCCAAGTCAATGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCCTCAAATTCATGCTGAAGTCATTACCCCCAAGTCAATGCTAT  500

seq1  TTGGAAGTTCAGGTTTAGGGGAGTGTCTTAGCCAGTGACCTATTGATGTG  550
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGGAAGTTCAGGTTTAGGGGAGTGTCTTAGCTAGTGACCTATTGATGTG  550

seq1  AAGAGATGCCATAACCAAAGCAACTCTTATTTAAAAGAGAGAAAGAGAGA  600
      ||||||||||||||||| |||||||||||||||||||||    |||||||
seq2  AAGAGATGCCATAACCACAGCAACTCTTATTTAAAAGAG----AGAGAGA  596

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATTTAA  646

seq1  TTGGGGCTTGCTTATATTTTCATAGGTTCAGCCCATTTTCATCATGGA-G  699
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  TTGGGGCTTGCTTATATTTTCATAGGTTTAGCCCATTTTCATCATGGAGG  696

seq1  GGGGAATATGGCAACATGCAGGAAGACATGATGCTGGAGAAGCAGCTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATATGGCAACATGCAGGAAGACATGATGCTGGAGAAGCAGCTGAG  746

seq1  AGTTCTAGATCCAGATGTGCAGGCAGCAGGAAGTGGGAGGTGCTAGGCTT  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTTCTAGATCCAGATGTGCA-GCAGCAGGAAGTGGGAGGTGCTAGGCTT  795

seq1  GCCTTGGGATTTCTAAACTTCAAAATCCAT-CCCCCCAATGGCACATTTC  848
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  GCCTTGGGATTTCTAAACTTCAAAATCCATCCCCCCCAGTGGCACATTTC  845

seq1  CTCCAACAAGACTACAACT-CCTAAATGTTTCAAATCGTGCCTCTCCCCA  897
      ||||||||||||||||||| |||||||||||| |||||||||||||||  
seq2  CTCCAACAAGACTACAACTCCCTAAATGTTTC-AATCGTGCCTCTCCCAG  894

seq1  GTGACCAAGCATTCAAATATGTG-AGCCTCTGGGGACCATTCTCATC  943
       ||||||||||||| |||||||| |||||   |||| | ||||||||
seq2  TTGACCAAGCATTC-AATATGTGAAGCCTTCTGGGA-CGTTCTCATC  939