BAC Information

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BAC

Clone NameB6Ng01-311G08
Chromosome17 (Build37)
Map Location 21,163,616 - 21,164,665
singlet/doubletsinglet
Overlap geneZfp160
Upstream geneV2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5
Downstream geneLOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311G08.bB6Ng01-311G08.g
ACCGA103124GA103125
length1,1711,088
definitionB6Ng01-311G08.b B6Ng01-311G08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaaggatgccaaagggctgagaagccccttgaaaaaat
gttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgaga
ttccaccttacactagtcagaaaggctaagatcaaaattcaggcgacagc
agatgctgccaagggtgtggggaaagaggaacactcctccattgctggtg
ggattgcaagctggtacaaccactctgaaaatcagtctggtggttaaaca
gaaaattggacatagtactataagaaggtccagcaatacctctcctgggc
atatatacagaatatgttccaaattgtaataaggacacatgttcaaccct
gctcacagcagccttatttgtaatacccagaagctggaaagaacccagat
gtcccacaacagaggaagggatagagaaattgtggtacatttacacaatg
gagtactactcagctattaaaaacaatgaatttatgaaatttttaagcca
attgatggatctggaggagatcatcctgagtaaggtaacccaatctcaaa
agaactcgcatgttattatatactcactgataagtggatattagcccaga
acctaagaatacccaagatacaatttgcaaaacactagaaaattaagaag
agagaagaccaacaggtggatacttctctcgttcttaaaatgggggacaa
aatacccatggaaggagttacagagacaaagtttggagctgagacagaag
gaaggaccagccagagactgctctacccagagatctatcccataaacaac
caccaaacacagacactattgtatatgccaacaagatattgctgacagga
ccctgatatagctgtctccagtgaggatatgccagtgcctggcaaataca
aaaatggatgctcacagtcatctattggatgggaacacagggcccccaat
gaaggagctagagaaagtatccaagaagctgaagtgtctgtacccctaaa
ggagcaacaaccatatgactatcagtacccccagagctcatgtctctagc
tgcatatgtgcagaggatgccttagtgcatcaatgggagaagagcctagt
ctggcaagattatatggcccgtacaggattaacatgtcagaatgaactgg
aatggcttggtaagcccggcg
gaattcacactggcagagaaaccttacagatgcaatgagtgtggaaaagc
ctttaattcacattccaacctaaatacccatcaagtaatccatactggac
aaaaaccctataaatgtatgcaatgtggcaaggtctttactcaaaattca
catcttgcaaatcatcaaagaacccatacaggagagaaaccttacaaatg
taatgagtgtggcaaagccttcagtgtgtactcaagtttgactactcatc
aggcaatccatactggagaaaaaccttataagtgtaatgaatgtggtaaa
gtcttcacgcaaaattcacacctagctagtcaccggaggactcatactgg
agaaaaaccttaccagtgtaataagtgtgataaagcctttagtgtgcgtt
caagcttgactacccatcaggcaatccatactggagaaaaaccttacaca
tgtagtgagtgtggcaaagtctttagtcgaagttccaaccttacaagtca
tcagagacttcatgttggacagaagcatatgtgaatatagcaaggtcttt
gggcataattcacttcttgcataatatccaggaatacaatcctaataaaa
tgttagtattgtgttgacgataaacacccatcatgagttcaaatatgtca
ctagatgtagtggtatgcatgtacaaccacccttttcagggtgttgtggg
agcattgtctgcttggcatatgtaggaagaacttgacctaaatttaaaaa
tatatcaagcttttgtagacatataacatattaagaagacatttcataca
tgtagagaagatgcttcaggatatgatttccacctctataaacccaaaaa
tgcacattgttgatgaaataatccaattggcacttattgaggatgttact
taatgactatttacagtggaaagtgaatagaaggagttattcagcctctt
gtttttcatggctaatctcaatgttacattccacagaataattgataata
ctgaacattaaaagtcaaaatagctaaacgtgaatatatttgaaaagtga
ggatggtgatacttgccttaatatccgtgtacctcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21163616_21164665
seq2: B6Ng01-311G08.g_109_1153

seq1  GAAAAGCCTTTAATTCACATTCCAACCTAAATACCCATCAAGTAATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCTTTAATTCACATTCCAACCTAAATACCCATCAAGTAATCCAT  50

seq1  ACTGGACAAAAACCCTATAAATGTATGCAATGTGGCAAGGTCTTTACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACAAAAACCCTATAAATGTATGCAATGTGGCAAGGTCTTTACTCA  100

seq1  AAATTCACATCTTGCAAATCATCAAAGAACCCATACAGGAGAGAAACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACATCTTGCAAATCATCAAAGAACCCATACAGGAGAGAAACCTT  150

seq1  ACAAATGTAATGAGTGTGGCAAAGCCTTCAGTGTGTACTCAAGTTTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAATGAGTGTGGCAAAGCCTTCAGTGTGTACTCAAGTTTGACT  200

seq1  ACTCATCAGGCAATCCATACTGGAGAAAAACCTTATAAGTGTAATGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAGGCAATCCATACTGGAGAAAAACCTTATAAGTGTAATGAATG  250

seq1  TGGTAAAGTCTTCACGCAAAATTCACACCTAGCTAGTCACCGGAGGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGTCTTCACGCAAAATTCACACCTAGCTAGTCACCGGAGGACTC  300

seq1  ATACTGGAGAAAAACCTTACCAGTGTAATAAGTGTGATAAAGCCTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGAGAAAAACCTTACCAGTGTAATAAGTGTGATAAAGCCTTTAGT  350

seq1  GTGCGTTCAAGCTTGACTACCCATCAGGCAATCCATACTGGAGAAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTTCAAGCTTGACTACCCATCAGGCAATCCATACTGGAGAAAAACC  400

seq1  TTACACATGTAGTGAGTGTGGCAAAGTCTTTAGTCGAAGTTCCAACCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATGTAGTGAGTGTGGCAAAGTCTTTAGTCGAAGTTCCAACCTTA  450

seq1  CAAGTCATCAGAGACTTCATGTTGGACAGAAGCATATGTGAATATAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATCAGAGACTTCATGTTGGACAGAAGCATATGTGAATATAGCAA  500

seq1  GGTCTTTGGGCATAATTCACTTCTTGCATAATATCCAGGAATACAATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGGGCATAATTCACTTCTTGCATAATATCCAGGAATACAATCCT  550

seq1  AATAAAATGTTAGTATTGTGTTGACGATAAACACCCATCATGAGTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGTTAGTATTGTGTTGACGATAAACACCCATCATGAGTTCAAA  600

seq1  TATGTCACTAGATGTAGTGGTATGCATGTACAACCACCCTTTTCAGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACTAGATGTAGTGGTATGCATGTACAACCACCCTTTTCAGGGTG  650

seq1  TTGTGGGAGCATTGTCTGCTTGGCATATGTAGGAAGAACTTGACCTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAGCATTGTCTGCTTGGCATATGTAGGAAGAACTTGACCTAAAT  700

seq1  TTAAAAATATATCAAGCTTTTGTAGACATATAACATATTAAGAAGACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATATCAAGCTTTTGTAGACATATAACATATTAAGAAGACATT  750

seq1  TCATACATGTAGAGAAGATGCTTCAGGATATGATTTCCACCTCTATAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGTAGAGAAGATGCTTCAGGATATGATTTCCACCTCTATAAAC  800

seq1  CCAAAAATGCACATTGTTGATGAAATAATCCAATTGGCACTTATTGAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATGCACATTGTTGATGAAATAATCCAATTGGCACTTATTGAGGA  850

seq1  TGTTACTTAATGACTATTTACAGTGGAAGGTGAATAGAAGGAGTTATTCA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGTTACTTAATGACTATTTACAGTGGAAAGTGAATAGAAGGAGTTATTCA  900

seq1  GCCTCTTGTTTTTCATGGCTAATCTTCAATGTTACATTCCACAGAATAAT  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCTCTTGTTTTTCATGGCTAATC-TCAATGTTACATTCCACAGAATAAT  949

seq1  TGATAATTACTGAACAATTAAAAGTCAAAATAGCTAAAACGTG-ATATAT  999
      |||||| |||||||| ||||||||||||||||||| ||||||| ||||||
seq2  TGATAA-TACTGAAC-ATTAAAAGTCAAAATAGCT-AAACGTGAATATAT  996

seq1  TTGAAAGGTTGAAGATGGTTGATACTTGCCTTTAATATTCGTGTA-CTCA  1048
      |||||| | ||| ||||| ||||||||||| ||||||| |||||| ||||
seq2  TTGAAAAG-TGAGGATGG-TGATACTTGCC-TTAATATCCGTGTACCTCA  1043

seq1  TT  1050
      ||
seq2  TT  1045