BAC Information

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BAC

Clone NameB6Ng01-312J01
Chromosome17 (Build37)
Map Location 24,793,300 - 24,936,991
singlet/doubletdoublet
Overlap geneNpw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
Upstream geneBC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2
Downstream gene4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312J01.bB6Ng01-312J01.g
ACCGA104003GA104004
length193201
definitionB6Ng01-312J01.b B6Ng01-312J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,936,793 - 24,936,991)(24,793,300 - 24,793,500)
sequence
atttaattttttacatgggtgtctgtgggtgtgcctgtatgtgatctgtg
tatatgcagacatcatgtcatgtgtgtggacatcatgggacagatcccca
aagggcaggcagcaagtctcagcagcaagcaagcaggttggtttgttgtt
tgtttgcttgtttgttgttggttttggttgagtttgggggttg
caacagcagatggggagggagatttgaggagtcccagcacttaggtctga
gaaaagacagatgctagaagtttggagatgcagcagagggtgaggggtct
agttgtgtgaagctggatgaagcccaaagatgtgcatgcatgggtgtgag
tgtggtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24936793_24936991
seq2: B6Ng01-312J01.b_43_241 (reverse)

seq1  CAACCCCCAAACTCAACCAAAACCAACAACAAACAAGCAAACAAACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCAAACTCAACCAAAACCAACAACAAACAAGCAAACAAACAACA  50

seq1  AACCAACCTGCTTGCTTGCTGCTGAGACTTGCTGCCTGCCCTTTGGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACCTGCTTGCTTGCTGCTGAGACTTGCTGCCTGCCCTTTGGGGAT  100

seq1  CTGTCCCATGATGTCCACACACATGACATGATGTCTGCATATACACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCATGATGTCCACACACATGACATGATGTCTGCATATACACAGAT  150

seq1  CACATACAGGCACACCCACAGACACCCATGTAAAAAATTAAATGAATTC  199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGGCACACCCACAGACACCCATGTAAAAAATTAAATGAATTC  199

seq1: chr17_24793300_24793500
seq2: B6Ng01-312J01.g_73_273

seq1  CAACAGCAGATGGGGAGGGAGATTTGAGGAGTCCCAGCACTTAGGTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCAGATGGGGAGGGAGATTTGAGGAGTCCCAGCACTTAGGTCTGA  50

seq1  GAAAAGACAGATGCTAGAAGTTTGGAGATGCAGCAGAGGGTGAGGGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACAGATGCTAGAAGTTTGGAGATGCAGCAGAGGGTGAGGGGTCT  100

seq1  AGTTGTGTGAAGCTGGATGAAGCCCAAAGATGTGCATGCATGGGTGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTGAAGCTGGATGAAGCCCAAAGATGTGCATGCATGGGTGTGAG  150

seq1  TGTGGTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  200

seq1  G  201
      |
seq2  G  201