BAC Information

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BAC

Clone NameB6Ng01-312J16
Chromosome17 (Build37)
Map Location 37,855,812 - 37,963,642
singlet/doubletdoublet
Overlap geneOlfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124
Upstream geneLOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp
Downstream geneOlfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312J16.bB6Ng01-312J16.g
ACCGA104033GA104034
length1,166788
definitionB6Ng01-312J16.b B6Ng01-312J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,962,478 - 37,963,642)(37,855,812 - 37,856,599)
sequence
gaattctgtccccagctgatccttggttcctgtgtcctgatggctctgta
ggtgtccctcttgggccaggaatttgattagaaatattggtcttacctgt
gctcacaaatgtgtaggcatgcttgggcatcttgctctttcctggtgata
tttgtgtatgtagttctgtggcacaggatcagctctgggagcagaaagag
actggaagactcttgtcccaggcattcccttgcttcctgtgtcctgaggg
ttctgggagagttcctctgagcagcagtggtgatcctacctatactcaca
ggcctgttagcactcctgggatactcactccctgctgatgctgtttgggt
gtggattcctgtggcagaggatcttctataggcagcgatgttacatattc
tttaatgcacttaaccttgtatttagatacattaaattctttctagtgtg
gggacatcatagccagtcctaacctcatgtcactgtgttactggtgttac
tgcctgctctattccagtcaattagtgacattcccaccatggtcgttatc
cctatgtaatacttacacataacttccaaggggtcactaaggaaaattaa
aatgtcaccaggcatccattaagggtcattggcctttgctctggaattac
taagatattttagtgtcctgcttgtgagataagaataagataatgctgtt
cctactttcttcttttgtaatctttgctttgtgtataggattgaaatagt
ctttttattactatatagcaggaaagagaaagaaatgaggaagtaaaata
atttcttgttcagctatgaattccatagatagtagtaatgtaaactttac
atactcatcttcataaattttttttttagctccttacagcacagtatgtt
tggttctaaggctgctgttcttttgctagcagtaagaataaattcattca
atctacatttgagtcaagtctaagtctttgggtctttttcattgggtttc
taatggtataacactagatattatcatgtagaaaatatgaacttgtattt
atgtgtcaaaattcaaagtgatttttttacatcgatctctgaaaatattt
ctgcaagtgtggtgaatgtgccatacaatcgatgacctttgtattgtagt
ctggtggatccaccag
gaattcattacagaaacatgcatttaggaatagagagggaaaacacttga
catcagtcataaatcacagctgataaacacaaccagcataggtttcatga
agaacattgacatgaacacagataattctctcagtgataatgttcagaag
atctggaaaagaaagcttagttcatttggtgtcatctctaaaaacaagtt
gaaaatatatagatgatgacaatttcacaataaaaatctgtcatgttgag
acatataagagatgtacctgtctttatgctttcaggcagggttgaaacat
aattagattagttttatataggctccaagttagcagtaagtctttaatgc
aaaaatgcttttaaataagctattaggtggtagtaggttttgactcattt
gctccttattgggaacaaaataaggaggacctggggaccctggggaacag
tggggaggaaaaggggcctaacgtccgaccagagcctgtgctctgggcag
gtggacacaggcacagctgctagatgcttcccccccacccggtgtgcacg
tgacccacacagtgggggtggaaaagggacagcccccaaccggggacccc
agagctaccttgttagtgtcccagggttgtaggagagagggatgagggaa
gaagttcccaacactgaccagagtgtggagagggtcttgaaagagcagag
actctctatggtttaagacctttattatagaaatacaggggaaaagagag
aaggtagaaagagagagagggagagggagatggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37962478_37963642
seq2: B6Ng01-312J16.b_45_1210 (reverse)

seq1  CTGGTGGA-CCACCAGATTTACAATACAAAAGGTCTATTTGATTGTAT-G  48
      |||||||| ||||||||  |||||||| |||||||   | |||||||| |
seq2  CTGGTGGATCCACCAGA-CTACAATAC-AAAGGTC--ATCGATTGTATGG  46

seq1  CACA-TCA-CACACTTGCCAGAAATA-TTTCAGAGATTGGATGTAAAAAA  95
      |||| ||| |||||||| |||||||| ||||||||| | |||||||||||
seq2  CACATTCACCACACTTG-CAGAAATATTTTCAGAGA-TCGATGTAAAAAA  94

seq1  ATCACCTTGAATTTTTGACCACATAAATAC-AGTTCATA-TTTCTACATG  143
      ||||| ||||| |||||| ||||||||||| |||||||| ||||||||||
seq2  ATCACTTTGAA-TTTTGA-CACATAAATACAAGTTCATATTTTCTACATG  142

seq1  AATATATCCTAGTGTTATACCATTAGAAA-CCAATGAAAAAGA-CCAAAG  191
      |  |||| ||||||||||||||||||||| ||||||||||||| ||||||
seq2  ATAATAT-CTAGTGTTATACCATTAGAAACCCAATGAAAAAGACCCAAAG  191

seq1  ACTTAGACTTGACTCAAATGTAGATTGAATGAATTTATTCTTACTGCTAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGACTTGACTCAAATGTAGATTGAATGAATTTATTCTTACTGCTAG  241

seq1  CAAAAGAACAGCAGCCTTAGAACCAAACATACTGTGCTGTAAGGAGCT-A  290
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAAAGAACAGCAGCCTTAGAACCAAACATACTGTGCTGTAAGGAGCTAA  291

seq1  AAAAAAAATTTATGAAGATGAGTATGTAAAGTTTACATTACTACTATCTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTTATGAAGATGAGTATGTAAAGTTTACATTACTACTATCTA  341

seq1  TGGAATTCATAGCTGAACAAGAAATTATTTTACTTCCTCATTTCTTTCTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCATAGCTGAACAAGAAATTATTTTACTTCCTCATTTCTTTCTC  391

seq1  TTTCCTGCTATATAGTAATAAAAAGACTATTTCAATCCTATACACAAAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCTATATAGTAATAAAAAGACTATTTCAATCCTATACACAAAGC  441

seq1  AAAGATTACAAAAGAAGAAAGTAGGAACAGCATTATCTTATTCTTATCTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTACAAAAGAAGAAAGTAGGAACAGCATTATCTTATTCTTATCTC  491

seq1  ACAAGCAGGACACTAAAATATCTTAGTAATTCCAGAGCAAAGGCCAATGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGGACACTAAAATATCTTAGTAATTCCAGAGCAAAGGCCAATGA  541

seq1  CCCTTAATGGATGCCTGGTGACATTTTAATTTTCCTTAGTGACCCCTTGG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATGGATGCCTGGTGACATTTTAATTTTCCTTAGTGACCCCTTGG  591

seq1  AAGTTATGTGTAAGTATTACATAGGGATAACGACCATGGTGGGAATGTCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGTGTAAGTATTACATAGGGATAACGACCATGGTGGGAATGTCA  641

seq1  CTAATTGACTGGAATAGAGCAGGCAGTAACACCAGTAACACAGTGACATG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGACTGGAATAGAGCAGGCAGTAACACCAGTAACACAGTGACATG  691

seq1  AGGTTAGGACTGGCTATGATGTCCCCACACTAGAAAGAATTTAATGTATC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGACTGGCTATGATGTCCCCACACTAGAAAGAATTTAATGTATC  741

seq1  TAAATACAAGGTTAAGTGCATTAAAGAATATGTAACATCGCTGCCTATAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAAGGTTAAGTGCATTAAAGAATATGTAACATCGCTGCCTATAG  791

seq1  AAGATCCTCTGCCACAGGAATCCACACCCAAACAGCATCAGCAGGGAGTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTCTGCCACAGGAATCCACACCCAAACAGCATCAGCAGGGAGTG  841

seq1  AGTATCCCAGGAGTGCTAACAGGCCTGTGAGTATAGGTAGGATCACCACT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCCAGGAGTGCTAACAGGCCTGTGAGTATAGGTAGGATCACCACT  891

seq1  GCTGCTCAGAGGAACTCTCCCAGAACCCTCAGGACACAGGAAGCAAGGGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCAGAGGAACTCTCCCAGAACCCTCAGGACACAGGAAGCAAGGGA  941

seq1  ATGCCTGGGACAAGAGTCTTCCAGTCTCTTTCTGCTCCCAGAGCTGATCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGGACAAGAGTCTTCCAGTCTCTTTCTGCTCCCAGAGCTGATCC  991

seq1  TGTGCCACAGAACTACATACACAAATATCACCAGGAAAGAGCAAGATGCC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACAGAACTACATACACAAATATCACCAGGAAAGAGCAAGATGCC  1041

seq1  CAAGCATGCCTACACATTTGTGAGCACAGGTAAGACCAATATTTCTAATC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGCCTACACATTTGTGAGCACAGGTAAGACCAATATTTCTAATC  1091

seq1  AAATTCCTGGCCCAAGAGGGACACCTACAGAGCCATCAGGACACAGGAAC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTGGCCCAAGAGGGACACCTACAGAGCCATCAGGACACAGGAAC  1141

seq1  CAAGGATCAGCTGGGGACAGAATTC  1165
      |||||||||||||||||||||||||
seq2  CAAGGATCAGCTGGGGACAGAATTC  1166

seq1: chr17_37855812_37856599
seq2: B6Ng01-312J16.g_67_854

seq1  GAATTCATTACAGAAACATGCATTTAGGAATAGAGAGGGAAAACACTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACAGAAACATGCATTTAGGAATAGAGAGGGAAAACACTTGA  50

seq1  CATCAGTCATAAATCACAGCTGATAAACACAACCAGCATAGGTTTCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCATAAATCACAGCTGATAAACACAACCAGCATAGGTTTCATGA  100

seq1  AGAACATTGACATGAACACAGATAATTCTCTCAGTGATAATGTTCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTGACATGAACACAGATAATTCTCTCAGTGATAATGTTCAGAAG  150

seq1  ATCTGGAAAAGAAAGCTTAGTTCATTTGGTGTCATCTCTAAAAACAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAAAGAAAGCTTAGTTCATTTGGTGTCATCTCTAAAAACAAGTT  200

seq1  GAAAATATATAGATGATGACAATTTCACAATAAAAATCTGTCATGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATATAGATGATGACAATTTCACAATAAAAATCTGTCATGTTGAG  250

seq1  ACATATAAGAGATGTACCTGTCTTTATGCTTTCAGGCAGGGTTGAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAGAGATGTACCTGTCTTTATGCTTTCAGGCAGGGTTGAAACAT  300

seq1  AATTAGATTAGTTTTATATAGGCTCCAAGTTAGCAGTAAGTCTTTAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTAGTTTTATATAGGCTCCAAGTTAGCAGTAAGTCTTTAATGC  350

seq1  AAAAATGCTTTTAAATAAGCTATTAGGTGGTAGTAGGTTTTGACTCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTTTTAAATAAGCTATTAGGTGGTAGTAGGTTTTGACTCATTT  400

seq1  GCTCCTTATTGGGAACAAAATAAGGAGGACCTGGGGACCCTGGGGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTATTGGGAACAAAATAAGGAGGACCTGGGGACCCTGGGGAACAG  450

seq1  TGGGGAGGAAAAGGGGCCTAACGTCCGACCAGAGCCTGTGCTCTGGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGAAAAGGGGCCTAACGTCCGACCAGAGCCTGTGCTCTGGGCAG  500

seq1  GTGGACACAGGCACAGCTGCTAGATGCTTCCCCCCCACCCGGTGTGCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACACAGGCACAGCTGCTAGATGCTTCCCCCCCACCCGGTGTGCACG  550

seq1  TGACCCACACAGTGGGGGTGGAAAAGGGACAGCCCCCAACCGGGGACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCACACAGTGGGGGTGGAAAAGGGACAGCCCCCAACCGGGGACCCC  600

seq1  AGAGCTACCTTGTTAGTGTCCCAGGGTTGTAGGAGAGAGGGATGAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACCTTGTTAGTGTCCCAGGGTTGTAGGAGAGAGGGATGAGGGAA  650

seq1  GAAGTTCCCAACACTGACCAGAGTGTGGAGAGGGTCTTGAAAGAGCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCCAACACTGACCAGAGTGTGGAGAGGGTCTTGAAAGAGCAGAG  700

seq1  ACTCTCTATGGTTTAAGACCTTTATTATAGAAATACAGGGGAAAAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTATGGTTTAAGACCTTTATTATAGAAATACAGGGGAAAAGAGAG  750

seq1  AAGGTAGAAAGAGAGAGAGGGAGAGGGAGAGGGAGAGA  788
      |||||||||||||||||||||||||||||| |||||||
seq2  AAGGTAGAAAGAGAGAGAGGGAGAGGGAGATGGAGAGA  788