BAC Information

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BAC

Clone NameB6Ng01-313C14
Chromosome17 (Build37)
Map Location 68,140,358 - 68,287,042
singlet/doubletdoublet
Overlap geneLama1, Arhgap28
Upstream genePtprm, Lrrc30
Downstream geneD930040M24Rik, EG622645
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313C14.bB6Ng01-313C14.g
ACCGA104451GA104452
length1,1351,100
definitionB6Ng01-313C14.b B6Ng01-313C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,285,890 - 68,287,042)(68,140,358 - 68,141,470)
sequence
gaattccaaagaagggagaaacagggatgaacgtggatgcagatgcgagc
tgggactgaacgaggggcactggaagtttgtttttctggtgcccaactac
aagattgacttcattgctctctgttaatattacgagaaaaaaaaagagaa
tctagatcagagaacagcacacataatgaggttattttagatgtttactc
tcatactcataatatatgtgagtgctaagtatatgtatatatcacatata
atatataatattatattatttctaagtggtatatgttgaagacttttttt
taaagaaggaaaataggcactatttagaataatgagaaagttttgtgtgg
atgaaatatagcatttgggagtgaagtacatatctttatatagatgggga
agctgagcaaaatggtatttcgacatcaaatgaccagcgaatgaatatct
agaattattcactttcactacctgaattgcacagaaagctctgttgctcc
acaacctttatattataaatcttccagtttgctttcttttacatttgttg
tgttttgagagctagcctccagcctaccatgtagcccaggttaccctcca
acttatagtctcggccttattttacttttgcagtctttcttttgtttctc
atttttaagtacagagatttttttttagaagtattatcatatatgcttag
ggaatattctaagagaatttgacccccttggtagagttgaaaggggaggt
gtgtacttcgaagttggaataagctattagcagtggaattcaaatatgac
ggaaaaccagactcagctggccttacccatctcaccctgcacagtcaaac
tgtgctgggtcagttagagaatggagtcaattctccccatgtccaaacct
ctccttcagtggtcttccagctgttcatcatgaatgctgattgactcttt
gcatagaaagaattcttaagatggatgagcgctctctctctctttctctc
ttctggtcttttagcatcaagatcgtgagtctaattgttgtctttcagct
gaggacattgacatgtatgaatcctctttgggaatagaaacaagtcacta
agcatccctcaggtgaagacgagactgctatcatt

gaattccaggtgagtctcagtgtctccttctccgttaggagttgcaacta
caccggcctgtttgtagatagcaccaactttagctcctaacaaagtgagc
ctggctactggcttacaggtgacgctcagagccaaaatcgggtgctgact
ttctttcatgatatatcctcaattggtgattttttgatgcaggagaaaaa
gctgcgtgttcaagaagaacaaaatgtgacctcagagctcattgccaagg
gtagagaatgggtggatgctgccgggactcacacagctgctgcacaagac
accctaacagtaagttccaatttggacagcccttgccattgccagagcag
ccacagacctcgccaacgggtgcgcgcacacttgtagctaaacagtcaca
tgtgtctgttgtaatctctccacgcagcagctggagcatcaccgagatga
actccttctgtgggccagaaaaatcaggagccacgtagatgacctcgtca
tgcagatgtccaaacgaagagcccgtgacctggtccacagggcagagcag
catgcctctgagctgcagagcagggcaggagctttggacaggtaaaactg
ctacacagtattcatagtccaggaagcgtttgctggccctcatcccaagg
gtgagggtggccattttggttcgtgctgaatcatttttatgctggttttg
catgcacgcccccgcatgcacactcctgtgtgcctgtgcttgagtacaca
cacacacacacacacacacacacacacacacacgtagacgcatgtgtatt
taagtggatatgcatgtaaaagccataggacaaactttgatattgatcct
caggtgtggtgcacatattttaaaacatctcttgctgaccaggaatttca
ccatgtaggctaggcttgctggctaaagagccctgtctgtcatagctagg
ctagctgacttgagagccctgtctgtcatagctagctagctgacttgaag
cctgtctgtctagttctcccagcactgggatgacagcaccagctgatttt
ttttctttccccgcatagcatctgtatagtaaggttttactgctgtgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_68285890_68287042
seq2: B6Ng01-313C14.b_45_1179 (reverse)

seq1  AATGATAAGCCAAAGTCTCGTCTTCACCTGAGGGATGCCTTTTAGTTGAC  50
      |||||| |||   |||||||||||||||||||||||||   |||| ||||
seq2  AATGAT-AGC---AGTCTCGTCTTCACCTGAGGGATGC---TTAG-TGAC  42

seq1  TTTGTTTCTATTCCCAAAGAGGAATTTCAATACATGTCAAATGTCTTCAG  100
       ||||||||||||||||||||||  ||| ||||||||| |||||| ||||
seq2  -TTGTTTCTATTCCCAAAGAGGA--TTC-ATACATGTC-AATGTCCTCAG  87

seq1  CTGAAAGAACAACAATTAGAACTCACGATCTTTGATGCTAAAAGACCAAG  150
      ||||||| ||||||||||| |||||||||| |||||||||||||||||  
seq2  CTGAAAG-ACAACAATTAG-ACTCACGATC-TTGATGCTAAAAGACCA--  132

seq1  AAAGAGAGAAAGAGAGAGAGAGCGCTCATCCATCTTAAGAATTCTTTCTA  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGAAAGAGAGAGAGAGCGCTCATCCATCTTAAGAATTCTTTCTA  182

seq1  TGCAAAGAGTCAATCAGCATTCATGATGAACAGCTGGAAGACCACTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGAGTCAATCAGCATTCATGATGAACAGCTGGAAGACCACTGAAG  232

seq1  GAGAGGTTTGGACATGGGGAGAATTGACTCCATTCTCTAACTGACCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTTGGACATGGGGAGAATTGACTCCATTCTCTAACTGACCCAGC  282

seq1  ACAGTTTGACTGTGCAGGGTGAGATGGGTAAGGCCAGCTGAGTCTGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGACTGTGCAGGGTGAGATGGGTAAGGCCAGCTGAGTCTGGTTT  332

seq1  TCCGTCATATTTGAATTCCACTGCTAATAGCTTATTCCAACTTCGAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCATATTTGAATTCCACTGCTAATAGCTTATTCCAACTTCGAAGTA  382

seq1  CACACCTCCCCTTTCAACTCTACCAAGGGGGTCAAATTCTCTTAGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCCCCTTTCAACTCTACCAAGGGGGTCAAATTCTCTTAGAATAT  432

seq1  TCCCTAAGCATATATGATAATACTTCTAAAAAAAAATCTCTGTACTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAGCATATATGATAATACTTCTAAAAAAAAATCTCTGTACTTAAA  482

seq1  AATGAGAAACAAAAGAAAGACTGCAAAAGTAAAATAAGGCCGAGACTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAACAAAAGAAAGACTGCAAAAGTAAAATAAGGCCGAGACTATA  532

seq1  AGTTGGAGGGTAACCTGGGCTACATGGTAGGCTGGAGGCTAGCTCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAGGGTAACCTGGGCTACATGGTAGGCTGGAGGCTAGCTCTCAAA  582

seq1  ACACAACAAATGTAAAAGAAAGCAAACTGGAAGATTTATAATATAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACAAATGTAAAAGAAAGCAAACTGGAAGATTTATAATATAAAGGT  632

seq1  TGTGGAGCAACAGAGCTTTCTGTGCAATTCAGGTAGTGAAAGTGAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGCAACAGAGCTTTCTGTGCAATTCAGGTAGTGAAAGTGAATAAT  682

seq1  TCTAGATATTCATTCGCTGGTCATTTGATGTCGAAATACCATTTTGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATATTCATTCGCTGGTCATTTGATGTCGAAATACCATTTTGCTCA  732

seq1  GCTTCCCCATCTATATAAAGATATGTACTTCACTCCCAAATGCTATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCCATCTATATAAAGATATGTACTTCACTCCCAAATGCTATATTT  782

seq1  CATCCACACAAAACTTTCTCATTATTCTAAATAGTGCCTATTTTCCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACACAAAACTTTCTCATTATTCTAAATAGTGCCTATTTTCCTTCT  832

seq1  TTAAAAAAAAGTCTTCAACATATACCACTTAGAAATAATATAATATTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAGTCTTCAACATATACCACTTAGAAATAATATAATATTATA  882

seq1  TATTATATGTGATATATACATATACTTAGCACTCACATATATTATGAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATGTGATATATACATATACTTAGCACTCACATATATTATGAGTA  932

seq1  TGAGAGTAAACATCTAAAATAACCTCATTATGTGTGCTGTTCTCTGATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTAAACATCTAAAATAACCTCATTATGTGTGCTGTTCTCTGATCT  982

seq1  AGATTCTCTTTTTTTTTCTCGTAATATTAACAGAGAGCAATGAAGTCAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCTTTTTTTTTCTCGTAATATTAACAGAGAGCAATGAAGTCAAT  1032

seq1  CTTGTAGTTGGGCACCAGAAAAACAAACTTCCAGTGCCCCTCGTTCAGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGTTGGGCACCAGAAAAACAAACTTCCAGTGCCCCTCGTTCAGTC  1082

seq1  CCAGCTCGCATCTGCATCCACGTTCATCCCTGTTTCTCCCTTCTTTGGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCGCATCTGCATCCACGTTCATCCCTGTTTCTCCCTTCTTTGGAA  1132

seq1  TTC  1153
      |||
seq2  TTC  1135


seq1: chr17_68140358_68141470
seq2: B6Ng01-313C14.g_66_1165

seq1  GAATTCCAGGTGAGTCTCAGTGTCTCCTTCTCCGTTAGGAGTTGCAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGAGTCTCAGTGTCTCCTTCTCCGTTAGGAGTTGCAACTA  50

seq1  CACCGGCCTGTTTGTAGATAGCACCAACTTTAGCTCCTAACAAAGTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGCCTGTTTGTAGATAGCACCAACTTTAGCTCCTAACAAAGTGAGC  100

seq1  CTGGCTACTGGCTTACAGGTGACGCTCAGAGCCAAAATCGGGTGCTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTACTGGCTTACAGGTGACGCTCAGAGCCAAAATCGGGTGCTGACT  150

seq1  TTCTTTCATGATATATCCTCAATTGGTGATTTTTTGATGCAGGAGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATGATATATCCTCAATTGGTGATTTTTTGATGCAGGAGAAAAA  200

seq1  GCTGCGTGTTCAAGAAGAACAAAATGTGACCTCAGAGCTCATTGCCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGTGTTCAAGAAGAACAAAATGTGACCTCAGAGCTCATTGCCAAGG  250

seq1  GTAGAGAATGGGTGGATGCTGCCGGGACTCACACAGCTGCTGCACAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAATGGGTGGATGCTGCCGGGACTCACACAGCTGCTGCACAAGAC  300

seq1  ACCCTAACAGTAAGTTCCAATTTGGACAGCCCTTGCCATTGCCAGAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAACAGTAAGTTCCAATTTGGACAGCCCTTGCCATTGCCAGAGCAG  350

seq1  CCACAGACCTCGCCAACGGGTGCGCGCACACTTGTAGCTAAACAGTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACCTCGCCAACGGGTGCGCGCACACTTGTAGCTAAACAGTCACA  400

seq1  TGTGTCTGTTGTAATCTCTCCACGCAGCAGCTGGAGCATCACCGAGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTTGTAATCTCTCCACGCAGCAGCTGGAGCATCACCGAGATGA  450

seq1  ACTCCTTCTGTGGGCCAGAAAAATCAGGAGCCACGTAGATGACCTCGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCTGTGGGCCAGAAAAATCAGGAGCCACGTAGATGACCTCGTCA  500

seq1  TGCAGATGTCCAAACGAAGAGCCCGTGACCTGGTCCACAGGGCAGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATGTCCAAACGAAGAGCCCGTGACCTGGTCCACAGGGCAGAGCAG  550

seq1  CATGCCTCTGAGCTGCAGAGCAGGGCAGGAGCTTTGGACAGGTAAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCTGAGCTGCAGAGCAGGGCAGGAGCTTTGGACAGGTAAAACTG  600

seq1  CTACACAGTATTCATAGTCCAGGAAGCGTTTGCTGGCCCTCATCCCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGTATTCATAGTCCAGGAAGCGTTTGCTGGCCCTCATCCCAAGG  650

seq1  GTGAGGGTGGCCATTTTGGTTCGTGCTGAATCATTTTTATGCTGGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTGGCCATTTTGGTTCGTGCTGAATCATTTTTATGCTGGTTTTG  700

seq1  CATGCACGCCCCCGCATGCACACTCCTGTGTGCCTGTGCTTGAGTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACGCCCCCGCATGCACACTCCTGTGTGCCTGTGCTTGAGTACACA  750

seq1  CACACACACACACACACACACACACACACACACGTAGACGCATGTGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGTAGACGCATGTGTATT  800

seq1  TAAGTGGATATGCATGTAAAAGCCATAGGACAAACTTTGATATTGATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATATGCATGTAAAAGCCATAGGACAAACTTTGATATTGATCCT  850

seq1  CAGGTGTGGTGCACATATTTTAAAACAATCTCTTGCTGACCAGGAA-TTC  899
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  CAGGTGTGGTGCACATATTTTAAAAC-ATCTCTTGCTGACCAGGAATTTC  899

seq1  ACCATGTAGGCTAGGCTTGCTGGCTAAAGAGCCCTGTCTGTCATAGGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACCATGTAGGCTAGGCTTGCTGGCTAAAGAGCCCTGTCTGTCATA-GCTA  948

seq1  GGCTAGCTGACTTGAGAGCCCTGTCTGTCATAGGCTAGGCTAGCTGACTT  999
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  GGCTAGCTGACTTGAGAGCCCTGTCTGTCATA-GCTA-GCTAGCTGACTT  996

seq1  GAAAGCCCTGTCTGTCTTAGTCTCCCCAGCACTGGGATGACAAGCCACCA  1049
      |||   |||||||||| ||||   ||||||||||||||||||   |||| 
seq2  GAA--GCCTGTCTGTC-TAGTTCTCCCAGCACTGGGATGACA--GCACC-  1040

seq1  AGCTTGGATTTTTTTTCTTTCCCCGCATAGCATCTGTATTAGTTAGGGTT  1099
      ||||  |||||||||||||||||||||||||||||||| ||| || ||||
seq2  AGCT--GATTTTTTTTCTTTCCCCGCATAGCATCTGTA-TAG-TAAGGTT  1086

seq1  TTACTGCTGTGAAC  1113
      ||||||||||||||
seq2  TTACTGCTGTGAAC  1100


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