BAC Information

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BAC

Clone NameB6Ng01-313G01
Chromosome17 (Build37)
Map Location 20,743,702 - 20,906,005
singlet/doubletdoublet
Overlap geneFpr-rs3, EG433073, V1re2, V1re6, LOC100041976
Upstream geneEG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582
Downstream geneV1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313G01.bB6Ng01-313G01.g
ACCGA104608GA104609
length9931,184
definitionB6Ng01-313G01.b B6Ng01-313G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,743,702 - 20,744,651)(20,904,823 - 20,906,005)
sequence
gaattcttagaggggagtaagagcagctgagccatcttctgtcctggatg
aatctaaactgtctttgtagatggctgtacaataatgttaatttctctgg
taaaatcagaatcaattactccaggaaccacatttattcactgcactgat
gtggatatccagccaattatcagttctgtggtcctcttagaaaggtgttc
ataaactctcataaaaggacaaacaacaggagagtcagaggttaatattc
ctgtggaggtagaacaaaggtccagtcgtgtgtccacagggttgtcagct
gcaactgtcagtcctatgttgacaaatggatttattgtttgaggttgttg
aattactcctattgtttgaggacccaagggaggtccctcacacagttttc
ctgccttaataggattcctctattattagggattactgtagcaccagata
aaggagtgatattttttaatttaataatatttttggagtacttcaaaggt
atcccccccttatacatggtggccccctctgttccctgaaatctgtgcct
taatggctggattagatgcttgggatatccctaaagagtcacatgaaacg
gtgccccagggcgaggtaatctaccagaagcggtcatataaccagagggt
aagttcccaggcacagtacattgcagatataccaggctgtagtagtgagt
ctaaacaaaaggaggcgccgtcaggatcccttttatgtctgtcccagaga
tagaaaaagtaaaaaggaggctcaccggtgcgggggagcagagggcttct
tctgtagtcagtgaggacgtgaaaccactggtaccacttattggcaccct
tcctctagctgggatcttattgtagtgtccagacgaaatacgggccatga
ttctttaaatatacttttactcagaaaggaaaagagtaaaaaaaaaaaaa
aagattggatagaggggagcagtggggcctaagaattttatgt
gaattctcatcatttggatcttgaattgctgaggagtacttaaagaaatg
ttcaatattcttggttatcagaaaatgcaaatttaaatgacttcgagact
ctacctcacacccattagaatggctaagattaaaaattcaaggaatagta
catgctggtgatgatcttgagtaaggggagcatccactgggagtgaaagt
taatactttctcatttttcttctgacacattttacattctgacaatatta
ttataataatttttagagaacgtctttaactcacccgaaacactgaatat
tctaggcttactggtccagtaaccccatggaactttatggcgttccactg
ttatgtatgagtaacagttgtttgataccctacatagttcttattttctg
acttctggagactcaattcaggccttcacataccaaaggaaagggcttca
tgaactgactgaaccatcttcctgaactagaaacaagttaacattaaggc
tacactattccattaagtgttacttttgctgagtagtgtctcaaaaatga
gtcaatttcaggaatccagagtctgaggcaagagcatttcagagtgatac
aatccagtcaatgattcagtcagagcttttatgacattctttatgaagga
aatagaaatatgaaagtttcaattagcttttttatataaacctatatcat
gtcattgttaacagtgttctattgtgttgttcttgcattttttattatgg
ggatatgcagccagatctgtagtaacctataaaagacaaaaccactgttg
ttatgcattgtgctcttcctaagggcttaatgttttcacattacactctt
actttccctttgacctgtttgttttattttttgtctttattttaacctga
tttagagcactgcatcatttgagtatcatttgaggttgtgtactcttaaa
gaacatgagatgatatctaaagttagaacctattacctacatatgtattt
ttgactttgactgaaagactattacagtgggtatgattggacatacagtt
ttatgtacctttctgttagaacacaaatcctcagattcaaaatttttcac
ttcaaatatatacccatttttggtggttggagaccagtatgatacactac
atttgagaacttagtgtgtcctatggtccttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20743702_20744651
seq2: B6Ng01-313G01.b_45_993

seq1  GAATTCTTAGAGGGGAGTAAGAGCAGCTGAGCCATCTTCTGTCCTGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGGGGAGTAAGAGCAGCTGAGCCATCTTCTGTCCTGGATG  50

seq1  AATCTAAACTGTCTTTGTAGATGGCTGTACAATAATGTTAATTTCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAACTGTCTTTGTAGATGGCTGTACAATAATGTTAATTTCTCTGG  100

seq1  TAAAATCAGAATCAATTACTCCAGGAACCACATTTATTCACTGCACTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAGAATCAATTACTCCAGGAACCACATTTATTCACTGCACTGAT  150

seq1  GTGGATATCCAGCCAATTATCAGTTCTGTGGTCCTCTTAGAAAGGTGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATCCAGCCAATTATCAGTTCTGTGGTCCTCTTAGAAAGGTGTTC  200

seq1  ATAAACTCTCATAAAAGGACAAACAACAGGAGAGTCAGAGGTTAATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCTCATAAAAGGACAAACAACAGGAGAGTCAGAGGTTAATATTC  250

seq1  CTGTGGAGGTAGAACAAAGGTCCAGTCGTGTGTCCACAGGGTTGTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGGTAGAACAAAGGTCCAGTCGTGTGTCCACAGGGTTGTCAGCT  300

seq1  GCAACTGTCAGTCCTATGTTGACAAATGGATTTATTGTTTGAGGTTGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGTCAGTCCTATGTTGACAAATGGATTTATTGTTTGAGGTTGTTG  350

seq1  AATTACTCCTATTGTTTGAGGACCCAAGGGAGGTCCCTCACACAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCCTATTGTTTGAGGACCCAAGGGAGGTCCCTCACACAGTTTTC  400

seq1  CTGCCTTAATAGGATTCCTCTATTATTAGGGATTACTGTAGCACCAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTAATAGGATTCCTCTATTATTAGGGATTACTGTAGCACCAGATA  450

seq1  AAGGAGTGATATTTTTTAATTTAATAATATTTTTGGAGTACTTCAAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGATATTTTTTAATTTAATAATATTTTTGGAGTACTTCAAAGGT  500

seq1  ATCCCCCCCTTATACATGGTGGCCCCCTCTGTTCCCTGAAATCTGTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCCCTTATACATGGTGGCCCCCTCTGTTCCCTGAAATCTGTGCCT  550

seq1  TAATGGCTGGATTAGATGCTTGGGATATCCCTAAAGAGTCACATGAAACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTGGATTAGATGCTTGGGATATCCCTAAAGAGTCACATGAAACG  600

seq1  GTGCCCCAGGGCGAGGTAATCTACCAGAAGCGGTCATATAACCAGAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCAGGGCGAGGTAATCTACCAGAAGCGGTCATATAACCAGAGGGT  650

seq1  AAGTTCCCAGGCACAGTACATTGCAGATATACCAGGCTGTAGTAGTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCAGGCACAGTACATTGCAGATATACCAGGCTGTAGTAGTGAGT  700

seq1  CTAAAC-AAAGGAGGCGCCGTCAGGATCCCTTTTATGTCTGTCCCAGAGA  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAAAGGAGGCGCCGTCAGGATCCCTTTTATGTCTGTCCCAGAGA  750

seq1  TAGAAAAAGTAAAAAGGAGGCTCACCGGTGCGGGGGAGCAGAGGGCTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGTAAAAAGGAGGCTCACCGGTGCGGGGGAGCAGAGGGCTTCT  800

seq1  TCTGTAGTCAGTGAGGACGTGAAACCACTGGTACCACTTATTGGCACCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTCAGTGAGGACGTGAAACCACTGGTACCACTTATTGGCACCCT  850

seq1  TCCTCTAGCTGGGATCTTATTGTAGTGTCCAGACGAAATACGGGCCATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGCTGGGATCTTATTGTAGTGTCCAGACGAAATACGGGCCATGA  900

seq1  TTCTTTAAATATTACTTTTACTCAGAAAGGAAAAGAGGTAAAAAAAAAAA  949
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  TTCTTTAAATA-TACTTTTACTCAGAAAGGAAAAGA-GTAAAAAAAAAAA  948

seq1  A  950
      |
seq2  A  949

seq1: chr17_20904823_20906005
seq2: B6Ng01-313G01.g_64_1247 (reverse)

seq1  GTTAA-GACCATAGGACACACTAGATCTTCAAATGGTTAGTGATACACTA  49
      ||||| |||||||||||||||||  |  |||||||  ||||| ||   ||
seq2  GTTAAGGACCATAGGACACACTAAGTTCTCAAATG--TAGTG-TATCATA  47

seq1  CTTGTCTCTCACACACAAAAAATGGTAATAATATTGAAGTGAAAATTTTT  99
      || ||||| ||  ||| ||||||||  |||   |||||||||||| ||||
seq2  CTGGTCTC-CAACCACCAAAAATGGGTATATATTTGAAGTGAAAAATTTT  96

seq1  GGAATCTGAGAATTTGTG-TCTAACAG-AAGGTACATAAAACTGTATGT-  146
       ||||||||| ||||||| |||||||| ||||||||||||||||||||| 
seq2  -GAATCTGAGGATTTGTGTTCTAACAGAAAGGTACATAAAACTGTATGTC  145

seq1  CAATCATA-CCACTTGTATAGTCTTTCAGTCAAAGTC-AAAATACATATG  194
      |||||||| |||||   |||||||||||||||||||| ||||||||||||
seq2  CAATCATACCCACTGTAATAGTCTTTCAGTCAAAGTCAAAAATACATATG  195

seq1  TAGGTAATAGGTTCTAACTTTAGATATCATCTCATGTTCTTTAAGAGTAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATAGGTTCTAACTTTAGATATCATCTCATGTTCTTTAAGAGTAC  245

seq1  ACAACCTCAAATGATACTCAAATGATGCAGTGCTCTAAATCAGGTTAAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTCAAATGATACTCAAATGATGCAGTGCTCTAAATCAGGTTAAAA  295

seq1  TAAAGACAAAAAATAAAACAAACAGGTCAAAGGGAAAGTAAGAGTGTAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAAAAAATAAAACAAACAGGTCAAAGGGAAAGTAAGAGTGTAAT  345

seq1  GTGAAAACATTAAGCCCTTAGGAAGAGCACAATGCATAACAACAGTGGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACATTAAGCCCTTAGGAAGAGCACAATGCATAACAACAGTGGTT  395

seq1  TTGTCTTTTATAGGTTACTACAGATCTGGCTGCATATCCCCATAATAAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTTATAGGTTACTACAGATCTGGCTGCATATCCCCATAATAAAA  445

seq1  AATGCAAGAACAACACAATAGAACACTGTTAACAATGACATGATATAGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGAACAACACAATAGAACACTGTTAACAATGACATGATATAGGT  495

seq1  TTATATAAAAAAGCTAATTGAAACTTTCATATTTCTATTTCCTTCATAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAAAAAGCTAATTGAAACTTTCATATTTCTATTTCCTTCATAAA  545

seq1  GAATGTCATAAAAGCTCTGACTGAATCATTGACTGGATTGTATCACTCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCATAAAAGCTCTGACTGAATCATTGACTGGATTGTATCACTCTG  595

seq1  AAATGCTCTTGCCTCAGACTCTGGATTCCTGAAATTGACTCATTTTTGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTTGCCTCAGACTCTGGATTCCTGAAATTGACTCATTTTTGAG  645

seq1  ACACTACTCAGCAAAAGTAACACTTAATGGAATAGTGTAGCCTTAATGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTCAGCAAAAGTAACACTTAATGGAATAGTGTAGCCTTAATGTT  695

seq1  AACTTGTTTCTAGTTCAGGAAGATGGTTCAGTCAGTTCATGAAGCCCTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTTCTAGTTCAGGAAGATGGTTCAGTCAGTTCATGAAGCCCTTT  745

seq1  CCTTTGGTATGTGAAGGCCTGAATTGAGTCTCCAGAAGTCAGAAAATAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTATGTGAAGGCCTGAATTGAGTCTCCAGAAGTCAGAAAATAAG  795

seq1  AACTATGTAGGGTATCAAACAACTGTTACTCATACATAACAGTGGAACGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTAGGGTATCAAACAACTGTTACTCATACATAACAGTGGAACGC  845

seq1  CATAAAGTTCCATGGGGTTACTGGACCAGTAAGCCTAGAATATTCAGTGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTTCCATGGGGTTACTGGACCAGTAAGCCTAGAATATTCAGTGT  895

seq1  TTCGGGTGAGTTAAAGACGTTCTCTAAAAATTATTATAATAATATTGTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGTGAGTTAAAGACGTTCTCTAAAAATTATTATAATAATATTGTCA  945

seq1  GAATGTAAAATGTGTCAGAAGAAAAATGAGAAAGTATTAACTTTCACTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAAAATGTGTCAGAAGAAAAATGAGAAAGTATTAACTTTCACTCC  995

seq1  CAGTGGATGCTCCCCTTACTCAAGATCATCACCAGCATGTACTATTCCTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATGCTCCCCTTACTCAAGATCATCACCAGCATGTACTATTCCTT  1045

seq1  GAATTTTTAATCTTAGCCATTCTAATGGGTGTGAGGTAGAGTCTCGAAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAATCTTAGCCATTCTAATGGGTGTGAGGTAGAGTCTCGAAGT  1095

seq1  CATTTAAATTTGCATTTTCTGATAACCAAGAATATTGAACATTTCTTTAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAATTTGCATTTTCTGATAACCAAGAATATTGAACATTTCTTTAA  1145

seq1  GTACTCCTCAGCAATTCAAGATCCAAATGATGAGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCTCAGCAATTCAAGATCCAAATGATGAGAATTC  1184