BAC Information

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BAC

Clone NameB6Ng01-313I19
Chromosome17 (Build37)
Map Location 21,048,203 - 21,249,310
singlet/doubletdoublet
Overlap geneV1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09
Upstream geneLOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7
Downstream geneEG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313I19.bB6Ng01-313I19.g
ACCGA104732GA104733
length7351,124
definitionB6Ng01-313I19.b B6Ng01-313I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,048,203 - 21,048,961)(21,248,177 - 21,249,310)
sequence
gaattcaccacatggttcctgactagttgatactgttattcttcctatgg
gattgccatccttttcagctccttttatccttcccctaactcttctgtag
ggaccctgacatcagtccagtgattagctgtaagtatctgcattttgcat
ttgtctcagtcagctgctgttcttgaacatattgttccctagcctgtttt
agcctcaagaaaaattacctaagattaatgccaatgagccattgtttgaa
tatgcagattacaactacatataacttttacttctgctttgctcctatgg
gcaccagataaagtcacttccactggtacttttaatattttttattaatt
aattaaaatttttatatgctgtatcttgatcagagtaaaacattctccaa
aattctctcagatctgccctgtcattcaagtacttttaaattccataaag
tttactttatgttgcccaagtactattgtgtgtactgcctggtgtgctca
gtttaacacaaagtcacaacgttacagtaaaatgaatctctctctacctg
cagctatgcaatgctactaggatttcaggtagtattgaaaattcatgcct
atattcctcttccctcagtgctgggatagtatcttatgtaagttttcaca
ggtcttgtgaaataccataattgtgtggatatatatatatatatatatat
atatatatatatatatatatatgtatacatatata
gaattcataggtctcagtcaccttgctaattccagagaaaggaggccaac
aaaattcttctgcttctagggtgccttctttcacttatgccatactgaat
tggtttttatgctggtccactgtggacactggatgggttttgtgtatttc
caagtagagattctgttaagtagaggagtctactaccatgaacatccaca
ggtggggtgaaggcactatgcacaaagtcctagctggatctcaggtagac
tccgaagagctcaaggcgtagccctgcaagctgcaaataaaatgacctaa
agaaaatcaggcctgagtcagacagatacttgaatgtatttcacctctaa
aatccagtttttaatgggatgtgtatagaaaaatctgaaagtcttcaaag
aatgcaaacaactatgcaagccagtgttcctaagaaggaggcagatattg
gtcagtctgtagatgctgagtattacaagcatggctaacacaaacatgct
gggataaacattccctttaagttattagcacaatgagctccttatgagga
caagactcatcaaatgagcatcatctcatctgttttaaaggaaatgtgaa
agggcctagaattgagtttttgttcctatcaatgtctttgtattttaaaa
gcaaatgtgacttttctcctatttaacaaaatttatcaaataaaaaaaaa
gagattcttgtgagatacagttcaagttccataaagtcaccagtttgcct
acacagtgtttatagaaaaactatttaaaattctgaacttagattgtatg
tgtatgcttttaaaaaaaaatcacacacacacacacacaatctaaaattt
tattccttattttcaatggaataaaactctagctcagcagtaaagagccc
tgactgctcttctaaagggtccaagattgattctcaaagaactcgagatc
atctataactccaatctaaggatctgatgccctcttccagtatcagaggg
cacagacagtcattatatgctgcaaatgttcaaacatataaaattaaaaa
taggaactctactatattcagtagaaaatataaataggcctggtgaattt
ggattatgtgtcagcaataataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21048203_21048961
seq2: B6Ng01-313I19.b_44_778

seq1  GAATTCACCACATGGTTCCTGACTAGTTGATACTGTTATTCTTCCTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACATGGTTCCTGACTAGTTGATACTGTTATTCTTCCTATGG  50

seq1  GATTGCCATCCTTTTCAGCTCCTTTTATCCTTCCCCTAACTCTTCTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCATCCTTTTCAGCTCCTTTTATCCTTCCCCTAACTCTTCTGTAG  100

seq1  GGACCCTGACATCAGTCCAGTGATTAGCTGTAAGTATCTGCATTTTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGACATCAGTCCAGTGATTAGCTGTAAGTATCTGCATTTTGCAT  150

seq1  TTGTCTCAGTCAGCTGCTGTTCTTGAACATATTGTTCCCTAGCCTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGTCAGCTGCTGTTCTTGAACATATTGTTCCCTAGCCTGTTTT  200

seq1  AGCCTCAAGAAAAATTACCTAAGATTAATGCCAATGAGCCATTGTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAAGAAAAATTACCTAAGATTAATGCCAATGAGCCATTGTTTGAA  250

seq1  TATGCAGATTAGAACTACATATAACTTTTACTTCTGCTTTGCTCCTATGG  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGATTACAACTACATATAACTTTTACTTCTGCTTTGCTCCTATGG  300

seq1  GCACCAGATAAAGTCACTTCCACTGGTACTTTTAATATTTTTTATTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGATAAAGTCACTTCCACTGGTACTTTTAATATTTTTTATTAATT  350

seq1  AATTAAAATTTTTATATGCTGTATCTTGATCAGAGTAAAACATTCTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTTTTATATGCTGTATCTTGATCAGAGTAAAACATTCTCCAA  400

seq1  AATTCTCTCAGATCTGCCCTGTCATTCAAGTACTTTTAAATTCCATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTCAGATCTGCCCTGTCATTCAAGTACTTTTAAATTCCATAAAG  450

seq1  TTTACTTTATGTTGCCCAAGTACTATTGTGTGTACTGCCTGGTGTGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTATGTTGCCCAAGTACTATTGTGTGTACTGCCTGGTGTGCTCA  500

seq1  GTTTAACACAAAGTCACAACGTTACAGTAAAATGAATCTCTCTCTACCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACACAAAGTCACAACGTTACAGTAAAATGAATCTCTCTCTACCTG  550

seq1  CAGCTATGCAATGCTACTAGGATTTCAGGTAGTATTGAAAATTCATGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGCAATGCTACTAGGATTTCAGGTAGTATTGAAAATTCATGCCT  600

seq1  ATATTCCTCTTCCCTCAGTGCTGGGATAGTATCTTATGTAAGTTTTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTCTTCCCTCAGTGCTGGGATAGTATCTTATGTAAGTTTTCACA  650

seq1  GGTCTTGTGAAATACCATAATTGTGTGGATATATATATATATATATATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTGAAATACCATAATTGTGTGGATATATATATATATATATATAT  700

seq1  ATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTATATATAT  750
      |||||||||||||||||||||||                        |||
seq2  ATATATATATATATATATATATG------------------------TAT  726

seq1  ACATATATA  759
      |||||||||
seq2  ACATATATA  735

seq1: chr17_21248177_21249310
seq2: B6Ng01-313I19.g_66_1189 (reverse)

seq1  TTTATTATTTGCTGACACCAATAATCCCAACATCA-CAGGCTAATTTATT  49
      ||||||| ||||||||||  ||||| ||||  ||| |||||  ||||| |
seq2  TTTATTA-TTGCTGACAC--ATAAT-CCAAATTCACCAGGCCTATTTA-T  45

seq1  ATTTTCTACTGGATATAGTAGAGTTTCTAATTTTTTATTTTATATGTTTG  99
      ||||||||||| ||||||||||||| || |||||| ||||||||||||||
seq2  ATTTTCTACTGAATATAGTAGAGTTCCT-ATTTTTAATTTTATATGTTTG  94

seq1  AACATTTTGCCAGCATAT-ATGACTGTTCCTGGTGCCCTCTGATACTGGA  148
      |||||||   |||||||| ||||||||  || ||||||||||||||||||
seq2  AACATTT--GCAGCATATAATGACTGT--CT-GTGCCCTCTGATACTGGA  139

seq1  AGAGGGCATCAGATCCCCTTAGATTGGAGTTATAGATGATCTCGAGTTCT  198
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATCAGAT--CCTTAGATTGGAGTTATAGATGATCTCGAGTTCT  187

seq1  TTGAGAATCAATCTTGGACCCTTTAGAAGAGCAGTCAGGGCTCTTTACTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATCAATCTTGGACCCTTTAGAAGAGCAGTCAGGGCTCTTTACTG  237

seq1  CTGAGCTAGAGTTTTATTCCATTGAAAATAAGGAATAAAATTTTAGATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTAGAGTTTTATTCCATTGAAAATAAGGAATAAAATTTTAGATTG  287

seq1  TGTGTGTGTGTGTGTGA-TTTTTTTTAAAAGCATACACATACAATCTAAG  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGATTTTTTTTTAAAAGCATACACATACAATCTAAG  337

seq1  TTCAGAATTTTAAATAGTTTTTCTATAAACACTGTGTAGGCAAACTGGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTTTAAATAGTTTTTCTATAAACACTGTGTAGGCAAACTGGTG  387

seq1  ACTTTATGGAACTTGAACTGTATCTCACAAGAATCTCTTTTTTTTTATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATGGAACTTGAACTGTATCTCACAAGAATCTCTTTTTTTTTATTT  437

seq1  GATAAATTTTGTTAAATAGGAGAAAAGTCACATTTGCTTTTAAAATACAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTTTGTTAAATAGGAGAAAAGTCACATTTGCTTTTAAAATACAA  487

seq1  AGACATTGATAGGAACAAAAACTCAATTCTAGGCCCTTTCACATTTCCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGATAGGAACAAAAACTCAATTCTAGGCCCTTTCACATTTCCTT  537

seq1  TAAAACAGATGAGATGATGCTCATTTGATGAGTCTTGTCCTCATAAGGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGATGAGATGATGCTCATTTGATGAGTCTTGTCCTCATAAGGAG  587

seq1  CTCATTGTGCTAATAACTTAAAGGGAATGTTTATCCCAGCATGTTTGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTGCTAATAACTTAAAGGGAATGTTTATCCCAGCATGTTTGTGT  637

seq1  TAGCCATGCTTGTAATACTCAGCATCTACAGACTGACCAATATCTGCCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGCTTGTAATACTCAGCATCTACAGACTGACCAATATCTGCCTC  687

seq1  CTTCTTAGGAACACTGGCTTGCATAGTTGTTTGCATTCTTTGAAGACTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGGAACACTGGCTTGCATAGTTGTTTGCATTCTTTGAAGACTTT  737

seq1  CAGATTTTTCTATACACATCCCATTAAAAACTGGATTTTAGAGGTGAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTTCTATACACATCCCATTAAAAACTGGATTTTAGAGGTGAAAT  787

seq1  ACATTCAAGTATCTGTCTGACTCAGGCCTGATTTTCTTTAGGTCATTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAAGTATCTGTCTGACTCAGGCCTGATTTTCTTTAGGTCATTTTA  837

seq1  TTTGCAGCTTGCAGGGCTACGCCTTGAGCTCTTCGGAGTCTACCTGAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCTTGCAGGGCTACGCCTTGAGCTCTTCGGAGTCTACCTGAGAT  887

seq1  CCAGCTAGGACTTTGTGCATAGTGCCTTCACCCCACCTGTGGATGTTCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGGACTTTGTGCATAGTGCCTTCACCCCACCTGTGGATGTTCAT  937

seq1  GGTAGTAGACTCCTCTACTTAACAGAATCTCTACTTGGAAATACACAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAGACTCCTCTACTTAACAGAATCTCTACTTGGAAATACACAAAA  987

seq1  CCCATCCAGTGTCCACAGTGGACCAGCATAAAAACCAATTCAGTATGGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCAGTGTCCACAGTGGACCAGCATAAAAACCAATTCAGTATGGCA  1037

seq1  TAAGTGAAAGAAGGCACCCTAGAAGCAGAAGAATTTTGTTGGCCTCCTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAAAGAAGGCACCCTAGAAGCAGAAGAATTTTGTTGGCCTCCTTT  1087

seq1  CTCTGGAATTAGCAAGGTGACTGAGACCTATGAATTC  1134
      |||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAATTAGCAAGGTGACTGAGACCTATGAATTC  1124