BAC Information

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BAC

Clone NameB6Ng01-313P09
Chromosome17 (Build37)
Map Location 89,991,811 - 89,992,940
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P09.bB6Ng01-313P09.g
ACCGA105031GA105032
length1,2121,117
definitionB6Ng01-313P09.b B6Ng01-313P09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaattcagaaaatgcctccatgagattggtctgtggagcatatg
ttaattagtggttgatgttgaaggattcagctcatcatagggagctgcta
gacaagtggttccagggtggggatataagaatgtagattggctgccagtg
agaaatgcaaatcaaaacaaccttgagattccaccttacaccagtcagaa
tggctaagatcaaaaactcaagtgacagcagatgctggtgaggatgtgga
gaaagactaatgaacactcctccattgttggtgggattgcaagcttgtac
aaccactctggaaatcagtctggtggttcctcagaaaattggacatagta
ctaccggaggatcctgcaatacctctcctgggcatatatccagaagatgt
cccaaccagtaagaaggacacattctccactatgttcatagcagccttat
ttataatagccagaagctggaaagaacccagatgcccctcaacagaggaa
tggatacagaaaatgtggtacatttacacaatggagtactactcagctat
taaaaagaatgaatttatgaaattcctaggcaaatggatggacctgaaag
gcatcatcctgagtgaggtaacccaatcacaaaaaaccctcacatgatat
gtactcactgataagtggatattagcccagaaacttaggatacccaagat
gtaagatacaatttactaaatgcatgaaactcaagaagaatgaagaccaa
agtgtggacactttgccccttcttagaagtgggaacaaaatacccatgga
aggagttacagagacaaagtttggagctgggacaaaaggatggacaatct
agagactgccatacccagggatccatcccataatcagcctccaaactctg
acaccattgcatacactagcaagattttgctgaaaggaccctgatatagc
tgtctcttgtgaggctatgctggggcctagcaaacacatagtggatgtca
cagtcagctattgggatgggatcacaggccccaatggaggagtttagaga
aagtacctaggagctaaaggaatctgcaaccatataaggtggaacaacat
atgacttatcaggtacccctggagctcgtgtgttctcttagctgcattga
tcaagatgctaagttggcactcagtaaaagaaaggccccttgtggtatat
tgtgctataact

gaattcctaacaaagtatggaaggagcagagattacctttcctgttttta
attcagaatcacggggtatggatgcctttctgaatgaaatggcatgctct
tttaggaagtgctcttaacagagaaaactagccatgacgtggaggtttgc
attcacaaggactggaaaaaaaatctatattaagctatattgatggagaa
atccttgaaataaactccaaaggcccgctgatacacacagcttttattta
ttttttccaaagctagagaaaatcaaccaacaccagatctatgaaataat
ttgggtgctcaaaagcagtacttgttaacccctgtcctcctgtgaacatt
tttggtgaaacaaaatttctcagagacatttctcataacccttgacctaa
agtcatccatcccctccaaattcacttgttttgtgcttatgtcattgtca
accaagtcgttctgtaataagaagtagaggaagcaggtggaaagcagatg
ccacctgtgatgacagacgagcaaagaaatcaccacggcaactgaaggga
gatgcatttggaagttctaaaagaagccaagaactaaagggctttactct
cctccaggaagtgcatagacagtttctttctaccaccaaatgttcagtgt
ttgggaaatggctgtaactacactgtgtagaaaccacattccccattctt
ggctccatagggaagcatggcaatgggtgccacattaacaaaacccttcc
tgcagatagggaggtggggctttgagttagagctggaagtgtgagctgga
ttggtgaaacagttctccacgaaaggaaagtgacgccatgctttagagat
gattcaggcactctatggccagcagtatttagatcagaatttctgtcaaa
ttttctacaaacgctgaccccagacttagaaattgtcttttacagctaca
ctataatgattaggttgatatttacctggggcagagggcttcaatatgga
gcaaagacagatgttgattgtgctctttatttataaaacactattactat
aaattttgccttatcagcatcattaatatgaccaagttttttttttgcca
taaaatacatcatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89991811_89992940
seq2: B6Ng01-313P09.g_64_1180

seq1  GAATTCCTAACAAAGTATGGAAGGAGCAGAGATTACCTTTCCTGTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACAAAGTATGGAAGGAGCAGAGATTACCTTTCCTGTTTTTA  50

seq1  ATTCAGAATCACGGGGTATGGATGCCTTTCTGAATGAAATGGCATGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAATCACGGGGTATGGATGCCTTTCTGAATGAAATGGCATGCTCT  100

seq1  TTTAGGAAGTGCTCTTAACAGAGAAAACTAGCCATGACGTGGAGGTTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAGTGCTCTTAACAGAGAAAACTAGCCATGACGTGGAGGTTTGC  150

seq1  ATTCACAAGGACTGGAAAAAAAATCTATATTAAGCTATATTGATGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAGGACTGGAAAAAAAATCTATATTAAGCTATATTGATGGAGAA  200

seq1  ATCCTTGAAATAAACTCCAAAGGCCCGCTGATACACACAGCTTTTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAAATAAACTCCAAAGGCCCGCTGATACACACAGCTTTTATTTA  250

seq1  TTTTTTCCAAAGCTAGAGAAAATCAACCAACACCAGATCTATGAAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCAAAGCTAGAGAAAATCAACCAACACCAGATCTATGAAATAAT  300

seq1  TTGGGTGCTCAAAAGCAGTACTTGTTAACCCCTGTCCTCCTGTGAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGCTCAAAAGCAGTACTTGTTAACCCCTGTCCTCCTGTGAACATT  350

seq1  TTTGGTGAAACAAAATTTCTCAGAGACATTTCTCATAACCCTTGACCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGAAACAAAATTTCTCAGAGACATTTCTCATAACCCTTGACCTAA  400

seq1  AGTCATCCATCCCCTCCAAATTCACTTGTTTTGTGCTTATGTCATTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCATCCCCTCCAAATTCACTTGTTTTGTGCTTATGTCATTGTCA  450

seq1  ACCAAGTCGTTCTGTAATAAGAAGTAGAGGAAGCAGGTGGAAAGCAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCGTTCTGTAATAAGAAGTAGAGGAAGCAGGTGGAAAGCAGATG  500

seq1  CCACCTGTGATGACAGACGAGCAAAGAAATCACCACGGCAACTGAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGATGACAGACGAGCAAAGAAATCACCACGGCAACTGAAGGGA  550

seq1  GATGCATTTGGAAGTTCTAAAAGAAGCCAAGAACTAAAGGGCTTTACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCATTTGGAAGTTCTAAAAGAAGCCAAGAACTAAAGGGCTTTACTCT  600

seq1  CCTCCAGGAAGTGCATAGACAGTTTCTTTCTACCACCAAATGTTCAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGAAGTGCATAGACAGTTTCTTTCTACCACCAAATGTTCAGTGT  650

seq1  TTGGGAAATGGCTGTAACTACACTGTGTAGAAACCACATTCCCCATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATGGCTGTAACTACACTGTGTAGAAACCACATTCCCCATTCTT  700

seq1  GGCTCCATAGGGAAGCATGGCAATGGGTGCCACATTAACAAAACCCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATAGGGAAGCATGGCAATGGGTGCCACATTAACAAAACCCTTCC  750

seq1  TGCAGATAGGGAGGTGGGGCTTTGAGTTAGAGCTGGAAGTGTGAGCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATAGGGAGGTGGGGCTTTGAGTTAGAGCTGGAAGTGTGAGCTGGA  800

seq1  TTGGTGAAACAGTTCTCCACG-AAGGAAAGTGACGCCATGCTTTAGAGAT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGGTGAAACAGTTCTCCACGAAAGGAAAGTGACGCCATGCTTTAGAGAT  850

seq1  GATTCAGGGCACTCTATGGCCAGCAGTATTTAGATCAGAATTTCTGTCAA  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCA-GGCACTCTATGGCCAGCAGTATTTAGATCAGAATTTCTGTCAA  899

seq1  ATTTTCTACAAAACGCTGACCCCAGACTTAGAAATTGTCTTTTACAGCTA  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAC-AAACGCTGACCCCAGACTTAGAAATTGTCTTTTACAGCTA  948

seq1  CACTATAATGATTAGGTTGATATTTACCTGGGGCAGAGGGCTTCAAATAT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACTATAATGATTAGGTTGATATTTACCTGGGGCAGAGGGCTTC-AATAT  997

seq1  GGAGGCAAAGACAGATGTTGATTGTGCTCTTTATTTATAAAACACTTATT  1049
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGA-GCAAAGACAGATGTTGATTGTGCTCTTTATTTATAAAACAC-TATT  1045

seq1  ACCTATAAATTTTTGCCTTATCAGCATTCATTAATAATGAACCAAGTTTT  1099
      | ||||||| |||||||||||||||| |||||||| ||| ||||||  ||
seq2  A-CTATAAA-TTTTGCCTTATCAGCA-TCATTAAT-ATG-ACCAAG--TT  1088

seq1  TTTTTTTTGGCATAAAATACATTTTATCTGT  1130
      ||||||||| |||||||||||  | ||||||
seq2  TTTTTTTTGCCATAAAATACA--TCATCTGT  1117


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