BAC Information

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BAC

Clone NameB6Ng01-315M05
Chromosome17 (Build37)
Map Location 33,438,709 - 33,439,940
singlet/doubletsinglet
Overlap geneLOC100043468
Upstream geneAkap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63
Downstream geneZfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315M05.bB6Ng01-315M05.g
ACCGA106325GA106326
length1,1331,141
definitionB6Ng01-315M05.b B6Ng01-315M05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgcaccccatttttaaaataggttaatttgtt
tctctggagtctaacttcttaagttcttttatatattggatattagctct
ctatcagatgtaggattggtaaagatattttcccaatctgttggtggcct
ttttgtcttcttgacggtgtcctttgccttacagaagctttacaatttta
tgaggtcccagttatcaattcttgatcttatatcacaagccattgatgtt
ctgctccggaaattttcccctgtgcttatatgttcgaggctcttcaccaa
tttctcttctataagtttcagtgcatttggttttatgtgaaggtacttga
tccactaggacttgagcttcgtacaaggagataagaatgggtcgatatgc
attcttctacatgataaccaccagttgagtgagccattttgaaaatgctg
tctttttttccaatggatgcttttagcttctcctttgtcaaagatcaaat
gactataggtgtgtgagttcatttctgggtcttcaattctattccattga
tcttcctgcctgtcactgtaccagtactatgcagttttttgtcacgattg
ctctgtagtacagcttgaggtcaggcatggtgatgccacatgaggttctt
ttatccttgagaatagttttcggtatcctgtttttttttttttttgttat
tccagattaatttggaaattgttctttctaaatctatgaagaattgagtt
ggaattttgatgggggattgcattgagtagctggatagcttttggcaaga
tggtcatttttactgtattgatcctaccaatccatgagcatggtacatct
ttccattttctgagatcttctttgatttcttttctttagagaaagttctt
attatacagatcttctcagtagagtcacaccaaggtattttatattattt
gtgactattgtgaaggtgtgtttcctaattatttctcagctgtttatcat
tgtgtagagcaagcactgacttgcttgagtattcatatcaggttcttgcc
tgagttatttatacagctaggatcctgtgaattggtactagtacatcgat
cacctcgaatggaatgactctcttcagattatc
gaattcaggtggttgagaaattctgtgactatgaacatagcagtcagtgt
ggaaagactcaccaacagatgacagagcatattgttaatggggagagtca
tcctgcagtcacggtttatgaaagcagtgtgaatgtaaaagacatcaatg
gtcactcatcctcagatgtgctccttagaggtcaaaatgaagagaaacca
tacagatgtcaggaactcgtggaaaaagctatcaaacgtgaaaaatgttg
gaaagacgtcacctattctgaatccttccatacacttgagagtgttcctg
ccacagagaacagttgtgaaaatacacagacctatgaatcttacaggact
cttacgcctcatcaagattctaagagagcccacactggagatgagctaca
tgagtgtaaacaatttgagaaaaccttaaagggagaaagtgatattcaaa
tatatgaaaggatccatactggagaaaaaccacttgagtataagcaatgt
ggagaagcctttgttaattccagtcaccagaccaaacatcagagaattca
cacaagagaaaaaacatactcatgtagacactgtggtgaaactttcctgt
attccatggcccgtcgtaatcatgaaaaaactcacaaaagagatcacaca
agagaaaaaacatactcatgtagacactgtggtgaaactttcctgtattc
catggcctgtcataatcatgaaaaaactcacaaaagagaatggagtttca
tatgtaagtattgtgggaaagcatgcattcattcttatcaacttcttcag
catgaaagaagccatactcgagagaaacggtatacatgtgctcagtgtgg
caaagcgtttagacggtcctcaaaccttcacaaacatgaaagaatttcac
agtgaaaggaaactttatgcatgtaaacattgtggggaaggcctttatca
gtgagggcaactgtccaaccatgaacgaattcatactgcagaaaactacg
ttgcagcaggtgtgggaaagggttacatggtctcatactttcaaagcatg
aaagaacgcatactcaagagaaacaggtatacatgtgcctcaggtgtgca
gcgttgaaccggtcctcaacttccaataccatgaagaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33438709_33439940
seq2: B6Ng01-315M05.g_66_1206

seq1  GAATTCAGGTGGTTGAGAAATTCTGTGACTATGAACATAGCAGTCAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGGTTGAGAAATTCTGTGACTATGAACATAGCAGTCAGTGT  50

seq1  GGAAAGACTCACCAACAGATGACAGAGCATATTGTTAATGGGGAGAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACTCACCAACAGATGACAGAGCATATTGTTAATGGGGAGAGTCA  100

seq1  TCCTGCAGTCACGGTTTATGAAAGCAGTGTGAATGTAAAAGACATCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGTCACGGTTTATGAAAGCAGTGTGAATGTAAAAGACATCAATG  150

seq1  GTCACTCATCCTCAGATGTGCTCCTTAGAGGTCAAAATGAAGAGAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCATCCTCAGATGTGCTCCTTAGAGGTCAAAATGAAGAGAAACCA  200

seq1  TACAGATGTCAGGAACTCGTGGAAAAAGCTATCAAACGTGAAAAATGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGTCAGGAACTCGTGGAAAAAGCTATCAAACGTGAAAAATGTTG  250

seq1  GAAAGACGTCACCTATTCTGAATCCTTCCATACACTTGAGAGTGTTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACGTCACCTATTCTGAATCCTTCCATACACTTGAGAGTGTTCCTG  300

seq1  CCACAGAGAACAGTTGTGAAAATACACAGACCTATGAATCTTACAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGAACAGTTGTGAAAATACACAGACCTATGAATCTTACAGGACT  350

seq1  CTTACGCCTCATCAAGATTCTAAGAGAGCCCACACTGGAGATGAGCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGCCTCATCAAGATTCTAAGAGAGCCCACACTGGAGATGAGCTACA  400

seq1  TGAGTGTAAACAATTTGAGAAAACCTTAAAGGGAGAAAGTGATATTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTAAACAATTTGAGAAAACCTTAAAGGGAGAAAGTGATATTCAAA  450

seq1  TATATGAAAGGATCCATACTGGAGAAAAACCACTTGAGTATAAGCAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAAGGATCCATACTGGAGAAAAACCACTTGAGTATAAGCAATGT  500

seq1  GGAGAAGCCTTTGTTAATTCCAGTCACCAGACCAAACATCAGAGAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCCTTTGTTAATTCCAGTCACCAGACCAAACATCAGAGAATTCA  550

seq1  CACAAGAGAAAAAACATACTCATGTAGACACTGTGGTGAAACTTTCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGAAAAAACATACTCATGTAGACACTGTGGTGAAACTTTCCTGT  600

seq1  ATTCCATGGCCCGTCGTAATCATGAAAAAACTCACAAAAGAGATCACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGGCCCGTCGTAATCATGAAAAAACTCACAAAAGAGATCACACA  650

seq1  AGAGAAAAAACATACTCATGTAGACACTGTGGTGAAACTTTCCTGTATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAACATACTCATGTAGACACTGTGGTGAAACTTTCCTGTATTC  700

seq1  CATGGCCTGTCATAATCATGAAAAAACTCACAAAAGAGAATGGAGTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTGTCATAATCATGAAAAAACTCACAAAAGAGAATGGAGTTTCA  750

seq1  TATGTAAGTATTGTGGGAAAGCATGCATTCATTCTTATCAACTTCTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGTATTGTGGGAAAGCATGCATTCATTCTTATCAACTTCTTCAG  800

seq1  CATGAAAGAAGCCATACTCGAGAGAAACGGTATACATGTGCTCAGTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGAAGCCATACTCGAGAGAAACGGTATACATGTGCTCAGTGTGG  850

seq1  CAAAGCGTTTAGACGGTCCTCAAACCTTCACAAACATGAAAGAA-TTCAC  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAAGCGTTTAGACGGTCCTCAAACCTTCACAAACATGAAAGAATTTCAC  900

seq1  AGTGAAAGGAAACTTTATGCATGTAAACATTGT-GGGAAGGCCTTTATCA  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTGAAAGGAAACTTTATGCATGTAAACATTGTGGGGAAGGCCTTTATCA  950

seq1  GTGAGGGCAACTGTTCCAACCATGAACGAATTCATACTGCAGGAAAAACC  998
      ||||||||||||| ||||||||||||||||||||||||||||   ||| |
seq2  GTGAGGGCAACTG-TCCAACCATGAACGAATTCATACTGCAG---AAAAC  996

seq1  TACGTTTGCAAGCA-GTGTGGGAAAGGGTTTACATGTTCCTCATACCTTC  1047
      |||| |||| |||| ||||||||||||| ||||||| | ||||||| |||
seq2  TACG-TTGC-AGCAGGTGTGGGAAAGGG-TTACATGGT-CTCATACTTTC  1042

seq1  AAAAGCATGAAAGACGCCATACTCAAGAGAAACA-GTATACATGTG-CTC  1095
       |||||||||||||   ||||||||||||||||| ||||||||||| |||
seq2  -AAAGCATGAAAGAACGCATACTCAAGAGAAACAGGTATACATGTGCCTC  1091

seq1  A-GTGTGGCAAAGCGTTTAGACGGTCCTCAAACCTTCACAAACATGAAAG  1144
      | |||||    |||||| |  |||||||| ||| | ||  | ||||||  
seq2  AGGTGTG---CAGCGTTGAACCGGTCCTC-AACTTCCAATACCATGAAGA  1137

seq1  AATTCACAGTGAAAAGAAACTTTATGCATGTAAACATTGTGGGAAGGCCT  1194
      ||||                                              
seq2  AATT----------------------------------------------  1141

seq1  TTAGCAGTGCGGGCAACCGTTACAACCATGAACAAATT  1232
                                            
seq2  --------------------------------------  1141