BAC Information

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BAC

Clone NameB6Ng01-317I07
Chromosome17 (Build37)
Map Location 76,708,402 - 76,837,969
singlet/doubletdoublet
Overlap genenone
Upstream geneLtbp1, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885, LOC100043886
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317I07.bB6Ng01-317I07.g
ACCGA107641GA107642
length1,1911,138
definitionB6Ng01-317I07.b B6Ng01-317I07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,708,402 - 76,709,604)(76,836,826 - 76,837,969)
sequence
gaattctaaaacgcttaaatgcagaaatcaggttcacatgtgaagatttg
aggaatgtctatgtgttaaggcatattataaaagtcaagtagttagaaaa
agttaaacaggaaaagttgaaatgtgggaaaggtaaacttctctgaacct
ggtttctgcatttaaatacatttaagcatttcagaattctgaccatccct
gtgacaagttaggtaccaccaacagcagttggtttggatactgagagatt
gaagatactgagagatacattgaggaatgtccattgggttaaacaactta
tagttctttggtgactttcttcctacagcacttgggaacaaatacagagt
ctcacagatatacaatgtgtaaaaggagacaaagctcagaatacacagca
ctaaataagaatcttcattcaaactctgccctcagagctcagagaacctg
tggaagataaaacagaaagagggtaagagccagaggggatgagggaaata
aggccttatagacacaacagcactggggcacatatgaactcagagagact
aaggccgcaatcactgtgcctgcatgaatctgtaccagatggagttcgaa
agctgaaagaggaggtggacccaaaccccactgatttttttacttcaaga
tactttattttcacagtgggtcacatcataagcttctggctcattctgcc
aatgtacaagctacaagtgcttgctcagaggtgaggggcactcattagta
tcgtgtctgaaaagtgaataaaaatccatgtaaaacaaatattcaaagtt
tctataggaacacagtaaatgtgaccccccatcccctaaccttccaaacc
ccattcttaactgagaagatacctccaatttataatcacttataaatgaa
tatttagttttcctcaagggagtctcactagagaaacaaaattgtcctta
agtggaggccacctgcccatacaaagaaaaacaaactcaaagatattctt
tgaaactccttgtctcataggatatgtcatgtccacggttcccccttcct
ttaattttccaatttctaagggactaacgaatgattctagagtagtgtac
caggtttcatcccacagcaatgaagtaatgttttctttctctacatcttt
cccacatgtgcgtcactgagttgatctagacattctgattg

gaattcaccactgtcggcagttttcatccttaggaaggcagaggatcaga
gctgagaaagaaaacagaatacggcttaaagaaaaatcacttgctaaaac
cagtaacatttatttattaatattaattcttctctttctatcactttaga
gaagtgaatttgccccgtataaaaaaagaataattaaggaactttgtaca
ttttcagtaactttatgtactttcaagtaattttaagagtcttagaaatg
taagggagactgtacttagagctaggggatagaattacattttgaagtca
aaatttcacagcacagtcctacaatgacattaactgtacttatgactatt
tttggtcatggggtcaatatcctaagtagtgcaaaactgtttaagccgca
ttttcttccttcagaaacttaccagcaagggtgtaatttcaatgatatca
agcatataagtaaaatccaatatcacatttggcaattttaagtaataagg
caccatatcaaatcaggaaatcaagaggcttttcccagagtatatgggaa
tagtaatcaacttagcaaatgaatatagtctttataagtttaaggaaatg
gtgagaacaatgttcctggaagaatggctatcataaagtttactctttat
agtataactggatgcaaagaaatggagtaggagatgcttttaatgacaag
aacaggaatatgatactcaaataaccattagaaaaaacataaaacatgct
aagataaatctgagtctctagaaggattaatataactgataacttctatc
ttagcagataaatgtggggagcaaacatagaaaaggggaagaaacaaaaa
gaggacaaacaatcctggtaataaaagaaaggctatcactacaaattcta
ttgaaataaaacatgtttaaacaataaaaagcatcataaaaacaagtctc
caaataaaatgaatatattctttaaaaatgcaaatgcaatcattttgaaa
gacataacaataaagtgtccccacacactagaagaaaacatcaaataagt
gataaaagcatcccctcaacaaaatttcagtcccaagttagtcagtatgg
aattctgtcagaatggggcctgagcataataggtaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_76708402_76709604
seq2: B6Ng01-317I07.b_48_1238

seq1  GAATTCTAAAACGCTTAAATGCAGAAATCAGGTTCACATGTGAAGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAACGCTTAAATGCAGAAATCAGGTTCACATGTGAAGATTTG  50

seq1  AGGAATGTCTATGTGTTAAGGCATATTATAAAAGTCAAGTAGTTAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTCTATGTGTTAAGGCATATTATAAAAGTCAAGTAGTTAGAAAA  100

seq1  AGTTAAACAGGAAAAGTTGAAATGTGGGAAAGGTAAACTTCTCTGAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAACAGGAAAAGTTGAAATGTGGGAAAGGTAAACTTCTCTGAACCT  150

seq1  GGTTTCTGCATTTAAATACATTTAAGCATTTCAGAATTCTGACCATCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGCATTTAAATACATTTAAGCATTTCAGAATTCTGACCATCCCT  200

seq1  GTGACAAGTTAGGTACCACCAACAGCAGTTGGTTTGGATACTGAGAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAGTTAGGTACCACCAACAGCAGTTGGTTTGGATACTGAGAGATT  250

seq1  GAAGATACTGAGAGATACATTGAGGAATGTCCATTGGGTTAAACAACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACTGAGAGATACATTGAGGAATGTCCATTGGGTTAAACAACTTA  300

seq1  TAGTTCTTTGGTGACTTTCTTCCTACAGCACTTGGGAACAAATACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTTGGTGACTTTCTTCCTACAGCACTTGGGAACAAATACAGAGT  350

seq1  CTCACAGATATACAATGTGTAAAAGGAGACAAAGCTCAGAATACACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGATATACAATGTGTAAAAGGAGACAAAGCTCAGAATACACAGCA  400

seq1  CTAAATAAGAATCTTCATTCAAACTCTGCCCTCAGAGCTCAGAGAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAGAATCTTCATTCAAACTCTGCCCTCAGAGCTCAGAGAACCTG  450

seq1  TGGAAGATAAAACAGAAAGAGGGTAAGAGCCAGAGGGGATGAGGGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATAAAACAGAAAGAGGGTAAGAGCCAGAGGGGATGAGGGAAATA  500

seq1  AGGCCTTATAGACACAACAGCACTGGGGCACATATGAACTCAGAGAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTATAGACACAACAGCACTGGGGCACATATGAACTCAGAGAGACT  550

seq1  AAGGCCGCAATCACTGTGCCTGCATGAATCTGTACCAGATGGAGTTCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCGCAATCACTGTGCCTGCATGAATCTGTACCAGATGGAGTTCGAA  600

seq1  AGCTGAAAGAGGAGGTGGACCCAAACCCCACTGATTTTTTTACTTCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGAGGAGGTGGACCCAAACCCCACTGATTTTTTTACTTCAAGA  650

seq1  TACTTTATTTTCACAGTGGGTCACATCATAAGCTTCTGGCTCATTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTTTCACAGTGGGTCACATCATAAGCTTCTGGCTCATTCTGCC  700

seq1  AATGTACAAGCTACAAGTGCTTGCTCAGAGGTGAGGGGCACTCATTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAAGCTACAAGTGCTTGCTCAGAGGTGAGGGGCACTCATTAGTA  750

seq1  TCGTGTCTGAAAAGTGAATAAAAATCCATGTAAAACAAATATTCAAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTCTGAAAAGTGAATAAAAATCCATGTAAAACAAATATTCAAAGTT  800

seq1  TCTATAGGAACACAGTAAATGTGACCCCCCATCCCCTAACCTTCCAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGGAACACAGTAAATGTGACCCCCCATCCCCTAACCTTCCAAACC  850

seq1  CCATTCTTAACTGAGAAGATACCTCCAATTTATAATCACTTATAAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTAACTGAGAAGATACCTCCAATTTATAATCACTTATAAATGAA  900

seq1  TATTTAGTTTTCCTCAAGGGAGTCTCACTAGAGAAACAAAA-TGTCCTTA  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTTAGTTTTCCTCAAGGGAGTCTCACTAGAGAAACAAAATTGTCCTTA  950

seq1  AGTGGAGGCCACCTGCCCATACAAAAGAAAACAAACTCAAAGATA-TCTT  998
      |||||||||||||||||||||||||  |||||||||||||||||| ||||
seq2  AGTGGAGGCCACCTGCCCATACAAAGAAAAACAAACTCAAAGATATTCTT  1000

seq1  TGAAAACTCCTTGTCTCATAAGATAATGTCATGT-CACGGTTCCCCCTTC  1047
      || ||||||||||||||||| ||| ||||||||| |||||||||||||||
seq2  TG-AAACTCCTTGTCTCATAGGAT-ATGTCATGTCCACGGTTCCCCCTTC  1048

seq1  CTTTAATTTTCCAATTTTCTAAGGAACCTACAGATTGATTCTAGAGTAGT  1097
      |||||||||||||| ||||||||| | |||  || |||||||||||||| 
seq2  CTTTAATTTTCCAA-TTTCTAAGGGA-CTAACGAATGATTCTAGAGTAG-  1095

seq1  TGTACCAGTTTCCAATCCCACCAGCAATGAAGTAGTGTTTCTCTTTCTCT  1147
      |||||||| || | |||||| ||||||||||||| ||||| |||||||||
seq2  TGTACCAGGTTTC-ATCCCA-CAGCAATGAAGTAATGTTT-TCTTTCTCT  1142

seq1  ACATCCTTTCCCACATGTGCTGTCACCTGAGGTTTTGATCTTAGCCATTC  1197
      |||| ||||||||||||||| |||| |||||   |||||| ||| |||||
seq2  ACAT-CTTTCCCACATGTGC-GTCA-CTGAG---TTGATC-TAGACATTC  1185

seq1  TGATTG  1203
      ||||||
seq2  TGATTG  1191


seq1: chr17_76836826_76837969
seq2: B6Ng01-317I07.g_67_1204 (reverse)

seq1  ACTTACCTATTATGCTTCAGCCCCCATTCTGAACAGAATTCAATACTGAA  50
      || |||||||||||| |||| |||||||||| ||||||||| |||||| |
seq2  ACCTACCTATTATGC-TCAGGCCCCATTCTG-ACAGAATTCCATACTG-A  47

seq1  CCTACTTGGGACTGAAATTTTGTTTGAGGGGATGGCTTTTAATCACTATT  100
      |  ||||||||||||||||||| |||||||||| |||||| ||||||  |
seq2  CTAACTTGGGACTGAAATTTTG-TTGAGGGGAT-GCTTTT-ATCACTTAT  94

seq1  TTGATG-TTTCTTCTAGTGTTGTGTGACCACTTTA-TGTTATGTCTTTCA  148
      |||||| |||||||||||| |||| |  ||||||| ||||||||||||||
seq2  TTGATGTTTTCTTCTAGTG-TGTGGGGACACTTTATTGTTATGTCTTTCA  143

seq1  AAATGATTGCATTTGCAATTTTTAAAGAATATATTCATTTTATTTGGAGA  198
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATGATTGCATTTGC-ATTTTTAAAGAATATATTCATTTTATTTGGAGA  192

seq1  CTTGTTTTTATGATGCTTTTTATTGTTTAAACATGTTTTATTTCAATAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTTATGATGCTTTTTATTGTTTAAACATGTTTTATTTCAATAGA  242

seq1  ATTTGTAGTGATAGCCTTTCTTTTATTACCAGGATTGTTTGTCCTCTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGTGATAGCCTTTCTTTTATTACCAGGATTGTTTGTCCTCTTTT  292

seq1  TGTTTCTTCCCCTTTTCTATGTTTGCTCCCCACATTTATCTGCTAAGATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCCCCTTTTCTATGTTTGCTCCCCACATTTATCTGCTAAGATA  342

seq1  GAAGTTATCAGTTATATTAATCCTTCTAGAGACTCAGATTTATCTTAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATCAGTTATATTAATCCTTCTAGAGACTCAGATTTATCTTAGCA  392

seq1  TGTTTTATGTTTTTTCTAATGGTTATTTGAGTATCATATTCCTGTTCTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATGTTTTTTCTAATGGTTATTTGAGTATCATATTCCTGTTCTTG  442

seq1  TCATTAAAAGCATCTCCTACTCCATTTCTTTGCATCCAGTTATACTATAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAAAGCATCTCCTACTCCATTTCTTTGCATCCAGTTATACTATAA  492

seq1  AGAGTAAACTTTATGATAGCCATTCTTCCAGGAACATTGTTCTCACCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAACTTTATGATAGCCATTCTTCCAGGAACATTGTTCTCACCATT  542

seq1  TCCTTAAACTTATAAAGACTATATTCATTTGCTAAGTTGATTACTATTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAACTTATAAAGACTATATTCATTTGCTAAGTTGATTACTATTCC  592

seq1  CATATACTCTGGGAAAAGCCTCTTGATTTCCTGATTTGATATGGTGCCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTCTGGGAAAAGCCTCTTGATTTCCTGATTTGATATGGTGCCTT  642

seq1  ATTACTTAAAATTGCCAAATGTGATATTGGATTTTACTTATATGCTTGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTAAAATTGCCAAATGTGATATTGGATTTTACTTATATGCTTGAT  692

seq1  ATCATTGAAATTACACCCTTGCTGGTAAGTTTCTGAAGGAAGAAAATGCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGAAATTACACCCTTGCTGGTAAGTTTCTGAAGGAAGAAAATGCG  742

seq1  GCTTAAACAGTTTTGCACTACTTAGGATATTGACCCCATGACCAAAAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAACAGTTTTGCACTACTTAGGATATTGACCCCATGACCAAAAATA  792

seq1  GTCATAAGTACAGTTAATGTCATTGTAGGACTGTGCTGTGAAATTTTGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAGTACAGTTAATGTCATTGTAGGACTGTGCTGTGAAATTTTGAC  842

seq1  TTCAAAATGTAATTCTATCCCCTAGCTCTAAGTACAGTCTCCCTTACATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGTAATTCTATCCCCTAGCTCTAAGTACAGTCTCCCTTACATT  892

seq1  TCTAAGACTCTTAAAATTACTTGAAAGTACATAAAGTTACTGAAAATGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGACTCTTAAAATTACTTGAAAGTACATAAAGTTACTGAAAATGTA  942

seq1  CAAAGTTCCTTAATTATTCTTTTTTTATACGGGGCAAATTCACTTCTCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTCCTTAATTATTCTTTTTTTATACGGGGCAAATTCACTTCTCTA  992

seq1  AAGTGATAGAAAGAGAAGAATTAATATTAATAAATAAATGTTACTGGTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATAGAAAGAGAAGAATTAATATTAATAAATAAATGTTACTGGTTT  1042

seq1  TAGCAAGTGATTTTTCTTTAAGCCGTATTCTGTTTTCTTTCTCAGCTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTGATTTTTCTTTAAGCCGTATTCTGTTTTCTTTCTCAGCTCTG  1092

seq1  ATCCTCTGCCTTCCTAAGGATGAAAACTGCCGACAGTGGTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGCCTTCCTAAGGATGAAAACTGCCGACAGTGGTGAATTC  1138


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