BAC Information

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BAC

Clone NameB6Ng01-319G03
Chromosome17 (Build37)
Map Location 68,137,584 - 68,138,737
singlet/doubletsinglet
Overlap geneLama1
Upstream genePtprm, Lrrc30
Downstream geneArhgap28, D930040M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319G03.bB6Ng01-319G03.g
ACCGA109027GA109028
length1,1351,133
definitionB6Ng01-319G03.b B6Ng01-319G03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgcttagctctgtaccccatttttaaatagtgttgtttggtt
tcctggagtccaacttcttgtgttctttatatatattggatattaaatcc
cctattgaatttaggattgttaaagatcttttcccaatctgttggttgcc
ttttggttttattgacagtgtcctttgtcttacataagctttgcagtttt
atgaggtcccatttgttgattcttgatcttacaacacaagccattgctgt
tgtgttcaggaatctttcccctctgcccatatcttcgaggctcttcctca
ctttctcctctataagtttcagcatatgctggtgaggatgtggagtaaga
ggaacactcctccattgctggtgggattgcaagctggtacaaccactctg
gaaatcagtttggtggttcctcagaaaagtagacatagttctaccagaag
atccaggaataccactcctgggcataaacacagaagatgccccaacatgt
aataaggacacatgctccactatgttcatagcagccttatttataataga
cagaagctggaaagaacccagatgcccctcaacagaggaatggatacaga
aaatgaggtacatttacacaatggagtactactcagctattaaaaacaat
gaatttatgaaattcttagacaactggatggatctggaggatatcatcct
aagtgaggtaacccaatcacaaaaggactcacatgatatgcactcactga
taagtgggtattatcagaatccttcttagaaaggggaacaaaatacccat
ggaagaagttacagagacaaagttcgaagcagagactgaaggaatgacca
tccagagactgctccacctagggatccatcccataaacaatcaccaaacc
cagacactattgcagatgctatcaagagcttgctaacagagcctgatata
gctgtctcctgagggctctgccagtgcctgcaatacagaagtgatgctca
caatcatcattgacagagcacatggttccatgaggagctagaagaaatac
caggagctggtagcttggagccataagagacatcatatggaacttacagt
actcgagcgtttgaactaactacctagtaaccccc

gaattcactggagttaccctatacctgtttccccagtagggagcatgcag
tacgggtgatatacctgcccggggaagccattagaaattcagtatccttt
gctttactgggcgctggtcatccatagagctcatctgaatgccagactcc
cagcaggaacttagtgctcatctgaatgccagactcccggcaggaactca
gtgcttggactcccggcaggaacttagtgctcatctgaatgccagactcc
ctgcaggaactcagtgcttggactcccggcaggaacttagtgctcatctg
aatgccagactcccggcaggaactcagtgcttgtccacaatctcctggct
tgcacagtggagccactcactgtcgtatcagtgggaggagtgtgtcgata
cttacaaccttacccactggcctcgctgaagacagcttactccagcttgc
catgtgaccttgtctccacacactgcagatgatcccgggcagctgagtgg
accatttcctcctgttggcgagccaacaagtgttcaaagataacttcaat
acagaaatgtgttctgagatgagtgtaggaggggcagcatgtaccaatgg
gaccagctctttactgcctgtcttcctgtttcaggatactgatgtgcata
gagagtttccagggagtgggtagactgaggagtagaccggagcatgctat
tcttgtggagtctgcttggtgggattgcaaaaattcatgggattgcaaag
aacagcaatctaaggggaaaccacttattctccatggcttcacaagaagc
taagagtgtgatgtcaccgatccagttcatgtgattgaggccactgatca
cgtttagaaaggaatagagggaagtctcctacatagacagtagcacgcct
ttaatttcagcacttgggaggcagagacggatggggtcgaggttagacaa
attaatcctctgtgtttgagctagcctggtctacagagtgagttccaggc
tagccaggacaacatataagatctatctcgaaaaataccatggatataat
agagagggcaattcttctattactaagctggttttatcatgtgacattgc
atctttaaggccaattggaacttcaaggttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_68137584_68138737
seq2: B6Ng01-319G03.g_68_1200

seq1  GAATTCACTGGAGTTACCCTATACCTGTTTCCCCAGTAGGGAGCATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAGTTACCCTATACCTGTTTCCCCAGTAGGGAGCATGCAG  50

seq1  TACGGGTGATATACCTGCCCGGGGAAGCCATTAGAAATTCAGTATCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGTGATATACCTGCCCGGGGAAGCCATTAGAAATTCAGTATCCTTT  100

seq1  GCTTTACTGGGCGCTGGTCATCCATAGAGCTCATCTGAATGCCAGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTGGGCGCTGGTCATCCATAGAGCTCATCTGAATGCCAGACTCC  150

seq1  CAGCAGGAACTTAGTGCTCATCTGAATGCCAGACTCCCGGCAGGAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAACTTAGTGCTCATCTGAATGCCAGACTCCCGGCAGGAACTCA  200

seq1  GTGCTTGGACTCCCGGCAGGAACTTAGTGCTCATCTGAATGCCAGACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGACTCCCGGCAGGAACTTAGTGCTCATCTGAATGCCAGACTCC  250

seq1  CTGCAGGAACTCAGTGCTTGGACTCCCGGCAGGAACTTAGTGCTCATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAACTCAGTGCTTGGACTCCCGGCAGGAACTTAGTGCTCATCTG  300

seq1  AATGCCAGACTCCCGGCAGGAACTCAGTGCTTGTCCACAATCTCCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGACTCCCGGCAGGAACTCAGTGCTTGTCCACAATCTCCTGGCT  350

seq1  TGCACAGTGGAGCCACTCACTGTCGTATCAGTGGGAGGAGTGTGTCGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGGAGCCACTCACTGTCGTATCAGTGGGAGGAGTGTGTCGATA  400

seq1  CTTACAACCTTACCCACTGGCCTCGCTGAAGACAGCTTACTCCAGCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAACCTTACCCACTGGCCTCGCTGAAGACAGCTTACTCCAGCTTGC  450

seq1  CATGTGACCTTGTCTCCACACACTGCAGATGATCCCGGGCAGCTGAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGACCTTGTCTCCACACACTGCAGATGATCCCGGGCAGCTGAGTGG  500

seq1  ACCATTTCCTCCTGTTGGCGAGCCAACAAGTGTTCAAAGATAACTTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTCCTCCTGTTGGCGAGCCAACAAGTGTTCAAAGATAACTTCAAT  550

seq1  ACAGAAATGTGTTCTGAGATGAGTGTAGGAGGGGCAGCATGTACCAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGTGTTCTGAGATGAGTGTAGGAGGGGCAGCATGTACCAATGG  600

seq1  GACCAGCTCTTTACTGCCTGTCTTCCTGTTTCAGGATACTGATGTGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTCTTTACTGCCTGTCTTCCTGTTTCAGGATACTGATGTGCATA  650

seq1  GAGAGTTTCCAGGGAGTGGGTAGACTGAGGAGTAGACCGGAGCATGCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTCCAGGGAGTGGGTAGACTGAGGAGTAGACCGGAGCATGCTAT  700

seq1  TCTTGTGGAGTCTGCTTGGTGGGATTGCAAAAATTCATGGGATTGCAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGAGTCTGCTTGGTGGGATTGCAAAAATTCATGGGATTGCAAAG  750

seq1  AACAGCAATCTAAGGGGAAACCACTTATTCTCCATGGCTTCACAAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAATCTAAGGGGAAACCACTTATTCTCCATGGCTTCACAAGAAGC  800

seq1  TAAGAGTGTGATGTCACCGATCCAGTTCATGTGATTGAGGCCACTGATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGTGATGTCACCGATCCAGTTCATGTGATTGAGGCCACTGATCA  850

seq1  CGTTTAGAAAGGAATAGAGGGAAGTCTCCTACATAGACAGTAGCACGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAGAAAGGAATAGAGGGAAGTCTCCTACATAGACAGTAGCACGCCT  900

seq1  TTAATTTCAGCACTTGGGAGGCAGAGACGGATGGGGTCGAGGTTAGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCAGCACTTGGGAGGCAGAGACGGATGGGGTCGAGGTTAGACAA  950

seq1  ATTAATCCCTCTGTGTTTGAGGCTAGCCTGGTCTACAGAGTGAGTTCCAG  1000
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTAAT-CCTCTGTGTTTGA-GCTAGCCTGGTCTACAGAGTGAGTTCCAG  998

seq1  GCTAGCCAGGACAACATATTAAGATCCTATCTCAAAAAAAAAAAAAACAA  1050
      |||||||||||||||||| |||||| |||||||       ||||| || |
seq2  GCTAGCCAGGACAACATA-TAAGAT-CTATCTC------GAAAAATACCA  1040

seq1  TGAATAAATAAATAAGAGAGGGCAATTCTTTCTTATTTACTAAACCTTGT  1100
      || ||  ||||   |||||||||||||| ||||   ||||||| |  || 
seq2  TGGAT--ATAA--TAGAGAGGGCAATTC-TTCT--ATTACTAAGC--TGG  1081

seq1  GTTTATCAATGGTGACAATTGCATCTTTTAAG-CAATTTGAACTTCAAGG  1149
       |||||||   ||||| ||||||||||| | | ||||| |||||||||||
seq2  TTTTATCA--TGTGAC-ATTGCATCTTTAAGGCCAATTGGAACTTCAAGG  1128

seq1  TTTTT  1154
      |||||
seq2  TTTTT  1133


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