BAC Information

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BAC

Clone NameB6Ng01-319N14
Chromosome17 (Build37)
Map Location 46,688,817 - 46,867,341
singlet/doubletdoublet
Overlap geneSrf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt
Upstream geneNfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc
Downstream geneTnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319N14.bB6Ng01-319N14.g
ACCGA109377GA109378
length1,062885
definitionB6Ng01-319N14.b B6Ng01-319N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,688,817 - 46,689,885)(46,866,452 - 46,867,341)
sequence
gaattcaagttcaaacccatacttcagttaaaaccctagttcaactgcac
catgcaagacatgaagctgttcctgggcatagtggcaaggcctggaatcc
taacacttgggaggcggaggcagaaggactgccatgagctcaaggctagc
ttagtctatactatataataagtaagactctgtctcaaaatttacaaatt
aaaaacataagggcaggtgtgatggcccatgcctgtaatcccagcaccca
gaagacagaggcaggggaatctcagtgaactgcaagtcaggctggtctac
agagtaagtccagggtagccaggcctacagagactcttgtcaaaataata
aaatgaatgctacaaaccaaacaaaaactacaattacttaactcagaggt
tgttaagacgagtaaacaggctagcattcttaaaaccactcagggaggag
agcagatgactaaaagcaagattcaaaacagacgtctgcagctctcagaa
ggaaacctccagcacactccgccccagtgaactgcacagagcgcacccag
actgtccccagctctgcgtcactgtctgggggacccctttactcccctta
atttcctcttcagcaaatgagagtgttgggcttattatgttttctttaaa
aggattcttacagttcggaactgccgggcactaaagcaggggctgagact
ttcaaagaacataaagttcgagagggctcatgaaggtttgacagggaagc
acttcagccaaagatcaacgaccaagggacttacccatgtgcatagaaat
gaggcctacacaacgcctggaaatgaccgcagctaacaggtaactaacta
acgaaagggggaacctggagtactgactctccaaagagggcctatgtttt
taagagagtgaggaagaagccaggcccttgagacccaagctaccaggccc
agatcctgatttcaggcagaggattcaaaaagcagggtggatcaaaccgg
atgtttgcttagcaactgttcccagaccgttgatgtaaagcgtgctaagc
caaacagagcct
gaattctaggacagccagagaaaccctttctcacaaaaaccaaaccaaac
caaacaaaccacttggtcctctgtggggttcagtgtcctcagcaccaccg
agtggctccccactgtctacaactgcaggttcagggtatctgaagctctc
gattctgggctccacgggcgtcagacacatactgacatctatgaagtcaa
aacagccatacctactataagaaggttaagtcacacaactgtgggcctcc
ttccatctccagggttcaccctgcattgggaaggcgaagggagggcgggc
gggcgggcgggcgggatgctccctgtcttctctcttctttccacgtaacg
agtgttcacagagttggaagtgtgtgggcaggcagggcaggcggggcagg
cttctcgtcgctcacacgcatcttccagagccgactttagcccggctggg
atcttgtccttggtggggtaaaaagggtgagcgggtaacacgaaacggac
cctcaggttatacagtgacgctagcccgagcgggcgccatgagcaccttc
cctgccgacccccaactttcctctctgaaggtgctcccatggaaagcaga
tggaaggcttgctatgtctcccacattgttcactaattcattgagcacta
ataatcctcctgtctcaccttactacacccagcctttaagagattgcaga
gtataaagcccatggattggaaggcccaggctaccttagagctcctggct
ggtatggggagggaagagagacacgcctatctccagtgtactctgtactg
gaatgggcatctttctcaaagactgttcataaatgtcccgaactcagtgc
tctcttagcgggatggttccctcacataaatgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46688817_46689885
seq2: B6Ng01-319N14.b_50_1111

seq1  GAATTCAAGTTCAAACCCATACTTCAGTTAAAACCCTAGTTCAACTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCAAACCCATACTTCAGTTAAAACCCTAGTTCAACTGCAC  50

seq1  CATGCAAGACATGAAGCTGTTCCTGGGCATAGTGGCAAGGCCTGGAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGACATGAAGCTGTTCCTGGGCATAGTGGCAAGGCCTGGAATCC  100

seq1  TAACACTTGGGAGGCGGAGGCAGAAGGACTGCCATGAGCTCAAGGCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTGGGAGGCGGAGGCAGAAGGACTGCCATGAGCTCAAGGCTAGC  150

seq1  TTAGTCTATACTATATAATAAGTAAGACTCTGTCTCAAAATTTACAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTATACTATATAATAAGTAAGACTCTGTCTCAAAATTTACAAATT  200

seq1  AAAAACATAAGGGCAGGTGTGATGGCCCATGCCTGTAATCCCAGCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATAAGGGCAGGTGTGATGGCCCATGCCTGTAATCCCAGCACCCA  250

seq1  GAAGACAGAGGCAGGGGAATCTCAGTGAACTGCAAGTCAGGCTGGTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAGGCAGGGGAATCTCAGTGAACTGCAAGTCAGGCTGGTCTAC  300

seq1  AGAGTAAGTCCAGGGTAGCCAGGCCTACAGAGACTCTTGTCAAAATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGTCCAGGGTAGCCAGGCCTACAGAGACTCTTGTCAAAATAATA  350

seq1  AAATGAATGCTACAAACCAAACAAAAACTACAATTACTTAACTCAGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATGCTACAAACCAAACAAAAACTACAATTACTTAACTCAGAGGT  400

seq1  TGTTAAGACGAGTAAACAGGCTAGCATTCTTAAAACCACTCAGGGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGACGAGTAAACAGGCTAGCATTCTTAAAACCACTCAGGGAGGAG  450

seq1  AGCAGATGACTAAAAGCAAGATTCAAAACAGACGTCTGCAGCTCTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGACTAAAAGCAAGATTCAAAACAGACGTCTGCAGCTCTCAGAA  500

seq1  GGAAACCTCCAGCACACTCCGCCCCAGTGAACTGCACAGAGCGCACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTCCAGCACACTCCGCCCCAGTGAACTGCACAGAGCGCACCCAG  550

seq1  ACTGTCCCCAGCTCTGCGTCACTGTCTGGGGGACCCCTTTACTCCCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCCAGCTCTGCGTCACTGTCTGGGGGACCCCTTTACTCCCCTTA  600

seq1  ATTTCCTCTTCAGCAAATGAGAGTGTTGGGCTTATTATGTTTTCTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTTCAGCAAATGAGAGTGTTGGGCTTATTATGTTTTCTTTAAA  650

seq1  AGGATTCTTACAGTTCGGAACTGCCGGGCACTAAAGCAGGGGCTGAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTTACAGTTCGGAACTGCCGGGCACTAAAGCAGGGGCTGAGACT  700

seq1  TTCAAAGAACATAAAGTTCGAGAGGGCTCATGAAGGTTTGACAGGGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAACATAAAGTTCGAGAGGGCTCATGAAGGTTTGACAGGGAAGC  750

seq1  ACTTCAGCCAAAGATCAACGACCAAGGGACTTACCCATGTGCATAGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCCAAAGATCAACGACCAAGGGACTTACCCATGTGCATAGAAAT  800

seq1  GAGGCCTACACAACGCCTGGAAATGACCGCAGCTAACAGGTAACTAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTACACAACGCCTGGAAATGACCGCAGCTAACAGGTAACTAACTA  850

seq1  ACGAAAGGGGGAACCTGGAGTACTGACTCTCCAAAGAGGGCCTATGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGGGGGAACCTGGAGTACTGACTCTCCAAAGAGGGCCTATGTTTT  900

seq1  TAAGGAGAGTGAGGAAGAAGCCAGG-CCTTGAGAACCAAGCTACCAGGCC  949
      ||| ||||||||||||||||||||| |||||||| |||||||||||||||
seq2  TAA-GAGAGTGAGGAAGAAGCCAGGCCCTTGAGACCCAAGCTACCAGGCC  949

seq1  CAGATCCTGATTTCAGGCAGAGGATTCAAAAAGCAGGGGTGGATCAAACC  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGATCCTGATTTCAGGCAGAGGATTCAAAAAGCA-GGGTGGATCAAACC  998

seq1  GGGATGTTTGCTAAGCAACTGTCCCCAAGACCGTTGATTGGTAAAGGCGT  1049
       ||||||||||| ||||||||| ||| |||||||||||  ||||| ||| 
seq2  -GGATGTTTGCTTAGCAACTGTTCCC-AGACCGTTGAT--GTAAA-GCG-  1042

seq1  TGCTAAGGCAAACAGAGCCT  1069
      ||||||| ||||||||||||
seq2  TGCTAAGCCAAACAGAGCCT  1062

seq1: chr17_46866452_46867341
seq2: B6Ng01-319N14.g_70_954 (reverse)

seq1  TATCATTTAGTGGAGGGAA-CACTCCGCTAAAGAGAGCCACTGTG-TCGG  48
      |||||||||   ||||||| ||  ||||| ||||||| ||||| | ||||
seq2  TATCATTTATGTGAGGGAACCATCCCGCT-AAGAGAG-CACTGAGTTCGG  48

seq1  GACA-TTATGAACAGTCTTTGAGAAAGATGCCCATCCAAGTACAAGAGTA  97
      |||| |||||||||||||||||||||||||||||| | ||||| ||||||
seq2  GACATTTATGAACAGTCTTTGAGAAAGATGCCCATTCCAGTAC-AGAGTA  97

seq1  CACCTGGAGATAGGCGTGTCTCTCTTCCCCTCCCCCATACCAGCCAGGAG  147
      || ||||||||||||||||||||||||||   ||||||||||||||||||
seq2  CA-CTGGAGATAGGCGTGTCTCTCTTCCC--TCCCCATACCAGCCAGGAG  144

seq1  CCTCCTAAGGTAGCCTGGGCCTTCCAATCCATGGGCTTTATACTCTGCAA  197
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  C--TCTAAGGTAGCCTGGGCCTTCCAATCCATGGGCTTTATACTCTGCAA  192

seq1  TCTCTTAAAGGCTGGGTGTAGTAAGGTGAGACAGGAGGATTATTAGTGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAAGGCTGGGTGTAGTAAGGTGAGACAGGAGGATTATTAGTGCT  242

seq1  CAATGAATTAGTGAACAATGTGGGAGACATAGCAAGCCTTCCATCTGCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATTAGTGAACAATGTGGGAGACATAGCAAGCCTTCCATCTGCTT  292

seq1  TCCATGGGAGCACCTTCAGAGAGGAAAGTTGGGGGTCGGCAGGGAAGGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGAGCACCTTCAGAGAGGAAAGTTGGGGGTCGGCAGGGAAGGTG  342

seq1  CTCATGGCGCCCGCTCGGGCTAGCGTCACTGTATAACCTGAGGGTCCGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGCGCCCGCTCGGGCTAGCGTCACTGTATAACCTGAGGGTCCGTT  392

seq1  TCGTGTTACCCGCTCACCCTTTTTACCCCACCAAGGACAAGATCCCAGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTTACCCGCTCACCCTTTTTACCCCACCAAGGACAAGATCCCAGCC  442

seq1  GGGCTAAAGTCGGCTCTGGAAGATGCGTGTGAGCGACGAGAAGCCTGCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAAGTCGGCTCTGGAAGATGCGTGTGAGCGACGAGAAGCCTGCCC  492

seq1  CGCCTGCCCTGCCTGCCCACACACTTCCAACTCTGTGAACACTCGTTACG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCCTGCCTGCCCACACACTTCCAACTCTGTGAACACTCGTTACG  542

seq1  TGGAAAGAAGAGAGAAGACAGGGAGCATCCCGCCCGCCCGCCCGCCCGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAAGAGAGAAGACAGGGAGCATCCCGCCCGCCCGCCCGCCCGCC  592

seq1  CTCCCTTCGCCTTCCCAATGCAGGGTGAACCCTGGAGATGGAAGGAGGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCGCCTTCCCAATGCAGGGTGAACCCTGGAGATGGAAGGAGGCC  642

seq1  CACAGTTGTGTGACTTAACCTTCTTATAGTAGGTATGGCTGTTTTGACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGTGTGACTTAACCTTCTTATAGTAGGTATGGCTGTTTTGACTT  692

seq1  CATAGATGTCAGTATGTGTCTGACGCCCGTGGAGCCCAGAATCGAGAGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGTCAGTATGTGTCTGACGCCCGTGGAGCCCAGAATCGAGAGCT  742

seq1  TCAGATACCCTGAACCTGCAGTTGTAGACAGTGGGGAGCCACTCGGTGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATACCCTGAACCTGCAGTTGTAGACAGTGGGGAGCCACTCGGTGGT  792

seq1  GCTGAGGACACTGAACCCCACAGAGGACCAAGTGGTTTGTTTGGTTTGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGACACTGAACCCCACAGAGGACCAAGTGGTTTGTTTGGTTTGGT  842

seq1  TTGGTTTTTGTGAGAAAGGGTTTCTCTGGCTGTCCTAGAATTC  890
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGTGAGAAAGGGTTTCTCTGGCTGTCCTAGAATTC  885