BAC Information

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BAC

Clone NameB6Ng01-320E14
Chromosome17 (Build37)
Map Location 34,452,858 - 34,453,296
singlet/doubletsinglet
Overlap geneH2-Eb1
Upstream geneZfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa
Downstream geneH2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320E14.bB6Ng01-320E14.g
ACCGA109695GA109696
length1,160433
definitionB6Ng01-320E14.b B6Ng01-320E14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gattctctttgtagataagtgtcatggcttgaatgaaaacatccctcata
catagaagtgtttggattgttggtctccagttggctgtagtgttggggta
ggtttgggacacgtgtccttaatgaagtgtgtcactggggtgggctttga
agcttcaaaccagggcatcactctcagtctgccctctgcttcctgctgct
ccatgccctgtgcttcagctctttcattctggagtcctgggtgcaatcct
cagtctgtaaaacaaaacaagaacagccaaaatagacagctctatcaagt
taaataattttctattaatatattcagaatgtatcaataattttttctcc
cagtgagaattaaaaaaccaactatgattcaaattggattaaactgtttt
tgtgtgtcctatggatatttatatttaatgtagttttatcttaaatgttt
atatttcatgtaaaatatcaaatagtactttgtggtgtgttacaattgtg
agagtctcaattttctgtatctattaataaagttttataggaacatagtg
gcattctcttatttgtatagtctgtatgacttctgtcttggttagggtgt
tactgctgtgcacaaacactatgaccaaggcaagtcttataaaggacaac
atttaattagggctgacttacaggttcagaggatcagttcattaaacatc
aaggcaggaacatggcagctttcatgcagtcatggggcaggaagagctga
gagttgtacatcttcatctgaaggctgctagtggaagactggtttccatg
cagctttgggtgagggcattaaagctcacacccacagtgacacactattt
caacaaggccacacccctgaaataatgtcactccctgggccaagcatata
caaactatcacggctgcctgctttgggtccaacacacagaacttgagctg
tattgataaatatagtggacatgaagccttatttgtagtggtatagagaa
tcaactggctgttaccaaagaatttttttatttgcaattctagtgaccat
ttttaaagttaaaaaattgtgttgtgggaagttggttcacgtgtttgaaa
agtaaggcaaatctgacctagctacactgcatgtggcactcttgctcctc
aatcatactc
cccccgtgtctccatgccatgaaaacatgtcctgcttggcccacatccct
ccagagacactgctcttccaggacctggctcctcctgattctccaccctg
gagatctgtgctcctgatggctgtttatccctgacccaggccttgcagct
cccaggacagaggccccactcttcacatctcctgtccccttttgtccctt
gccttttgtctggcacttctgagccagtctgctgtcatatgcttttttac
atttttctcaaataaacaaataatgaaagtcatctgcttcatagagtttc
aagcagaagaaacagtaaaaagaaagacaggacccactataagacactgt
tcatgcataattgtagatgccagcagctacatgaactgggctcctgaaag
gaaagctggggctgtatgggtggggggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34452858_34453296
seq2: B6Ng01-320E14.g_68_506

seq1  GAATTCCCCCCGTGTCTCCATGCCATGAAAACATGTCCTGCTTGGCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCCGTGTCTCCATGCCATGAAAACATGTCCTGCTTGGCCCAC  50

seq1  ATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCTCCTCCTGATTCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCAGAGACACTGCTCTTCCAGGACCTGGCTCCTCCTGATTCTCC  100

seq1  ACCCTGGAGATCTGTGCTCCTGATGGCTGTTTATCCCTGACCCAGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGAGATCTGTGCTCCTGATGGCTGTTTATCCCTGACCCAGGCCTT  150

seq1  GCAGCTCCCAGGACAGAGGCCCCACTCTTCACATCTCCTGTCCCCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCCCAGGACAGAGGCCCCACTCTTCACATCTCCTGTCCCCTTTTG  200

seq1  TCCCTTGCCTTTTGTCTGGCACTTCTGAGCCAGTCTGCTGTCATATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCCTTTTGTCTGGCACTTCTGAGCCAGTCTGCTGTCATATGCTT  250

seq1  TTTTACATTTTTCTCAAATAAACAAATAATGAAAGTCATCTGCTTCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATTTTTCTCAAATAAACAAATAATGAAAGTCATCTGCTTCATAG  300

seq1  AGTTTCAAGCAGAAGAAACAGTAAAAAGAAAGACAGGACCCACTATAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAGCAGAAGAAACAGTAAAAAGAAAGACAGGACCCACTATAAGA  350

seq1  CACTGTTCATGCATAATTGTAGATGCCAGCAGCTACATGAACTGGGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCATGCATAATTGTAGATGCCAGCAGCTACATGAACTGGGCTCC  400

seq1  TGAAAGGAAAGCTGGGGCTGTATGGGTGGGGGGGGGGTG  439
      |||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAAAGCTGGGGCTGTATGGGTGGGGGGGGGGTG  439