BAC Information

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BAC

Clone NameB6Ng01-320G04
Chromosome17 (Build37)
Map Location 22,300,517 - 22,475,816
singlet/doubletdoublet
Overlap geneEG210853, LOC671007, EG240038, EG631624, 6330416L07Rik
Upstream geneLOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844
Downstream geneZfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320G04.bB6Ng01-320G04.g
ACCGA109765GA109766
length1,0851,097
definitionB6Ng01-320G04.b B6Ng01-320G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,300,517 - 22,301,627)(22,474,715 - 22,475,816)
sequence
gaattcccatttctcctacagaagtctacagtcacagcactgaatgataa
caaactctaaaacaacagcttggccacctatgtaagggcagagtgctttt
cttcaaccaaagaaataattttctgatacaggggagtgatcataagtata
aaaagatgttttcttttcttttttttttttaaatagaatcattcttttat
gagaattatctagatgaataccagaacacataacccaaagaagaatcatg
gtcttcatcgaagatcattgaagtttaaagaaaacatgaatcaaaagact
actgcacatatagagcagtagttctcaacctgtggattgccacccctttg
aggttcaatggaccatcagaaaacaaagatatttacattacaattcatca
cagtagcaaagttacagttattaagtaccaatgaaaataatgttatagtt
ggaggtcatcacaacataaggaacagtagtaaagggtcacagtattaaga
ctagatatgaatgaagcctgagagaagataaacagctcaattaaataaca
aagaagcttgaaagtaaattcactaaaaagatagtaatattgaagggaat
tcaagatgaaatgaggatgaattgaaaaactcagtaagtattagaaaatg
catcccgaagagacttgagactttgaagacatagaattaatgacatatca
ttgatcagtggccattagaaagaactatgcagctctcattgtagcctgtg
ctagctttctgagtatctgattgtgatatccccatccttagagttctgtc
ttttcacatgagctctctttaattcacatgacccttgcaatggtgccatt
tgctagagtgcatattataacagtgcacattatagtgccatgctgtttta
acatttttctccccaaatctgagctaatgaattcccttttcttatgaaaa
tccagtctgtttctttcttcttcttcttctcttcttcttcttctcttcct
ctatagatatttctttatctacattcaatgatatccgaaagtccctatac
cctcgtctggccctgctccctacccacccaatccg
gaattctttagatataaatgtagtcttaggactcatcagaaaatgcacac
attagagcatatttacaaatgaaacaaatgacacaaacccttcaaaaaag
atcatgttaaaactcatcaaacaatatatacaggagagtgtcctttcaaa
tataaatgtttaaatcctttactgttagctcatctctgacagtacatcag
agaattcatacgggagagaaacctcacaaatgtaacatgaggaaagagct
ttacctgaaaagtagtttctgctggaaaacatgtggcatgtattttaccc
aagtggaattctttgcaacactttaggctccacactagagttaattatga
atattaagatcttgtgaaagcacctaagtagtgttcaaatcatagaaact
ataaagcatttatgctggagaatgactgaaaatgtgacaatgaagaaaaa
ttttcaaaatgtttactatcaaatgttccataatgaagacaaagaagaga
agccacaagaatctgtaacacttttgtggagacggaaataatccattaca
gaggaaatctgattatggtggataatacacttctcaaaatagatagtgac
accaatagcattctgtatgtttaactcaaatgaagaaactcagaaaaatc
atatttgttaaaagagggtttgataaactgagccaccaaaatggaatgct
cttcatgccagtattcctacagatacagtttgccctcagtgtattcaaaa
tctgtatcatgctggtttcaagtttcaggatagcaagtgtctttgagtcc
cttgggctctgatcaccaactccttccccatagtcctgtatataactgta
ataatattgattgaacaagttggacttggttgttttcagtttcaacttgg
gattggtggatggatatgtgtgttgcatctctgtagaaatgtctctcata
caacgtgttgaccattactatttttctcatattgtaacataaattatact
agaccatatttttccactatcgatagcactcgttgttggtatatggacct
tggtaacaggtacacaagacctaaggaaccatgtatttctataatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22300517_22301627
seq2: B6Ng01-320G04.b_45_1129

seq1  GAATTCCCATTTCTCCTACAGAAGTCTACAGTCACAGCACTGAATGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTCTCCTACAGAAGTCTACAGTCACAGCACTGAATGATAA  50

seq1  CAAACTCTAAAACAACAGCTTGGCCACCTATGTAAGGGCAGAGTGCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTAAAACAACAGCTTGGCCACCTATGTAAGGGCAGAGTGCTTTT  100

seq1  CTTCAACCAAAGAAATAATTTTCTGATACAGGGGAGTGATCATAAGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCAAAGAAATAATTTTCTGATACAGGGGAGTGATCATAAGTATA  150

seq1  AAAAGATGTTTTCTTTTCTTTTTTTTTTTTAAATAGAATCATTCTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTTTTCTTTTCTTTTTTTTTTTTAAATAGAATCATTCTTTTAT  200

seq1  GAGAATTATCTAGATGAATACCAGAACACATAACCCAAAGAAGAATCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTATCTAGATGAATACCAGAACACATAACCCAAAGAAGAATCATG  250

seq1  GTCTTCATCGAAGATCATTGAAGTTTAAAGAAAACATGAATCAAAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATCGAAGATCATTGAAGTTTAAAGAAAACATGAATCAAAAGACT  300

seq1  ACTGCACATATAGAGCAGTAGTTCTCAACCTGTGGATTGCCACCCCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACATATAGAGCAGTAGTTCTCAACCTGTGGATTGCCACCCCTTTG  350

seq1  AGGTTCAATGGACCATCAGAAAACAAAGATATTTACATTACAATTCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAATGGACCATCAGAAAACAAAGATATTTACATTACAATTCATCA  400

seq1  CAGTAGCAAAGTTACAGTTATTAAGTACCAATGAAAATAATGTTATAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCAAAGTTACAGTTATTAAGTACCAATGAAAATAATGTTATAGTT  450

seq1  GGAGGTCATCACAACATAAGGAACAGTAGTAAAGGGTCACAGTATTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCATCACAACATAAGGAACAGTAGTAAAGGGTCACAGTATTAAGA  500

seq1  CTAGATATGAATGAAGCCTGAGAGAAGATAAACAGCTCAATTAAATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATGAATGAAGCCTGAGAGAAGATAAACAGCTCAATTAAATAACA  550

seq1  AAGAAGCTTGAAAGTAAATTCACTAAAAAGATAGTAATATTGAAGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTTGAAAGTAAATTCACTAAAAAGATAGTAATATTGAAGGGAAT  600

seq1  TCAAGATGAAATGAGGATGAATTGAAAAACTCAGTAAGTATTAGAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGAAATGAGGATGAATTGAAAAACTCAGTAAGTATTAGAAAATG  650

seq1  CATCCCGAAGAGACTTGAGACTTTGAAGACATAGAATTAATGACATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCGAAGAGACTTGAGACTTTGAAGACATAGAATTAATGACATATCA  700

seq1  TTGATCAGTGGCCATTAGAAAGAACTATGCAGCTCTCATTGTAGCCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAGTGGCCATTAGAAAGAACTATGCAGCTCTCATTGTAGCCTGTG  750

seq1  CTAGCTTTCTGAGTATCTGATTGTGATATCCCCATCCTTAGAGTTCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTCTGAGTATCTGATTGTGATATCCCCATCCTTAGAGTTCTGTC  800

seq1  TTTTCACATGAGCTCTCTTTAATTCACATGACCCTTGCAATGGTGCCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATGAGCTCTCTTTAATTCACATGACCCTTGCAATGGTGCCATT  850

seq1  TGCTAGAGTGCATATTATAACAGTGCACATTATAGTGCCATGCTGTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAGTGCATATTATAACAGTGCACATTATAGTGCCATGCTGTTTTA  900

seq1  ACATTTTTCTCCCCAAATCTGAGCTAATGAATTCCCTTTTCTTATGAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATTTTTCTCCCCAAATCTGAGCTAATGAATTCCCTTTTCTTATG-AAA  949

seq1  ATCCAGTTCTTGTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  1000
      ||||||               | | ||||||||||   |||||   ||||
seq2  ATCCAG---------------TCTGTTTCTTTCTT--CTTCTT--CTTCT  980

seq1  TTCTTTCTTTCTTTCTTTCTTATTAGATATTTTCTTTATCTACATTTCAA  1050
       |  |||||  | |||| ||   |||||| ||||||||||||||||   |
seq2  CTTCTTCTTCTTCTCTTCCTCTATAGATA-TTTCTTTATCTACATT--CA  1027

seq1  ATGATATCCCGAAAGTTCCCTATACCCTCCCTCT-GCCCTGCTCCCCTAC  1099
      ||||||| ||||||| |||||||||||| | ||| |||||||| ||||||
seq2  ATGATAT-CCGAAAG-TCCCTATACCCT-CGTCTGGCCCTGCT-CCCTAC  1073

seq1  CCACCCATTCCG  1111
      ||||||| ||||
seq2  CCACCCAATCCG  1085

seq1: chr17_22474715_22475816
seq2: B6Ng01-320G04.g_73_1161 (reverse)

seq1  AGATTATAGGAAATACATGTTTTCCTAAGGTCTTGTGTAACCTGTTA-CA  49
      |||||||| ||||||||||  ||||| ||||||||||| |||||||| ||
seq2  AGATTATA-GAAATACATG-GTTCCTTAGGTCTTGTGT-ACCTGTTACCA  47

seq1  AGTTCATAATACCCACAAAGGAGTTGCTATCGATAGGTTGAAAAATATTG  99
      || ||   ||||| || || ||| ||||||||||| || |||||||| ||
seq2  AGGTCCATATACCAAC-AACGAG-TGCTATCGATA-GTGGAAAAATA-TG  93

seq1  GTCTAGTATTAATTTTATGTTACAATTATGGAGAAAATAGTAATGGGTTC  149
      |||||||||  | |||||||||||| ||||   |||||||||||||  ||
seq2  GTCTAGTAT--AATTTATGTTACAA-TATGAGAAAAATAGTAATGG--TC  138

seq1  AACACGTTGTATGAGAGACATTTTCTACAGAGATGCAACACACATATCCA  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACACGTTGTATGAGAGACA-TTTCTACAGAGATGCAACACACATATCCA  187

seq1  TCCACCAATCCCAAGTTGAAACTGAAAACAACCAAGTCCAACTTGTTCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAATCCCAAGTTGAAACTGAAAACAACCAAGTCCAACTTGTTCAA  237

seq1  TCAATATTTATTACAGTTATATACAGGACTATGGGGAAGGAGTTGGTGAT  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATA-TTATTACAGTTATATACAGGACTATGGGGAAGGAGTTGGTGAT  286

seq1  CAGAGCCCAAGGGACTCAAAGACACTTGCTATCCTGAAACTTGAAACCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCAAGGGACTCAAAGACACTTGCTATCCTGAAACTTGAAACCAG  336

seq1  CATGATACAGATTTTGAATACACTGAGGGCAAACTGTATCTGTAGGAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATACAGATTTTGAATACACTGAGGGCAAACTGTATCTGTAGGAATA  386

seq1  CTGGCATGAAGAGCATTCCATTTTGGTGGCTCAGTTTATCAAACCCTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGAAGAGCATTCCATTTTGGTGGCTCAGTTTATCAAACCCTCTT  436

seq1  TTAACAAATATGATTTTTCTGAGTTTCTTCATTTGAGTTAAACATACAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAATATGATTTTTCTGAGTTTCTTCATTTGAGTTAAACATACAGA  486

seq1  ATGCTATTGGTGTCACTATCTATTTTGAGAAGTGTATTATCCACCATAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTGGTGTCACTATCTATTTTGAGAAGTGTATTATCCACCATAAT  536

seq1  CAGATTTCCTCTGTAATGGATTATTTCCGTCTCCACAAAAGTGTTACAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCCTCTGTAATGGATTATTTCCGTCTCCACAAAAGTGTTACAGA  586

seq1  TTCTTGTGGCTTCTCTTCTTTGTCTTCATTATGGAACATTTGATAGTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGGCTTCTCTTCTTTGTCTTCATTATGGAACATTTGATAGTAAA  636

seq1  CATTTTGAAAATTTTTCTTCATTGTCACATTTTCAGTCATTCTCCAGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAAATTTTTCTTCATTGTCACATTTTCAGTCATTCTCCAGCAT  686

seq1  AAATGCTTTATAGTTTCTATGATTTGAACACTACTTAGGTGCTTTCACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTATAGTTTCTATGATTTGAACACTACTTAGGTGCTTTCACAA  736

seq1  GATCTTAATATTCATAATTAACTCTAGTGTGGAGCCTAAAGTGTTGCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAATATTCATAATTAACTCTAGTGTGGAGCCTAAAGTGTTGCAAA  786

seq1  GAATTCCACTTGGGTAAAATACATGCCACATGTTTTCCAGCAGAAACTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGGGTAAAATACATGCCACATGTTTTCCAGCAGAAACTAC  836

seq1  TTTTCAGGTAAAGCTCTTTCCTCATGTTACATTTGTGAGGTTTCTCTCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGTAAAGCTCTTTCCTCATGTTACATTTGTGAGGTTTCTCTCCC  886

seq1  GTATGAATTCTCTGATGTACTGTCAGAGATGAGCTAACAGTAAAGGATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATTCTCTGATGTACTGTCAGAGATGAGCTAACAGTAAAGGATTT  936

seq1  AAACATTTATATTTGAAAGGACACTCTCCTGTATATATTGTTTGATGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTATATTTGAAAGGACACTCTCCTGTATATATTGTTTGATGAGT  986

seq1  TTTAACATGATCTTTTTTGAAGGGTTTGTGTCATTTGTTTCATTTGTAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATGATCTTTTTTGAAGGGTTTGTGTCATTTGTTTCATTTGTAAA  1036

seq1  TATGCTCTAATGTGTGCATTTTCTGATGAGTCCTAAGACTACATTTATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCTAATGTGTGCATTTTCTGATGAGTCCTAAGACTACATTTATAT  1086

seq1  CTA  1102
      |||
seq2  CTA  1089