BAC Information

Click to search

BAC

Clone NameB6Ng01-320K18
Chromosome17 (Build37)
Map Location 51,159,054 - 51,160,141
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320K18.bB6Ng01-320K18.g
ACCGA109983GA109984
length5001,077
definitionB6Ng01-320K18.b B6Ng01-320K18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcttagacaaatggatggatctggaggatatcatcct
aagtgaggtaacccattcataaaagaacacacataatatacactcactga
taagtggatattagcccagaagctcagaatacccaagatacaatttgcaa
aacacatgaaactcaagaagaaggaagaccaaagtgtggacacttcgatc
cctcttagaagggggaacaaaatacccatggaaggagttacagagacaaa
gtttggagaagagactgaaggcatgaccatccagaaactgccccacttgg
ggatccattccacaaacaaccaccaaacccagacactattgcagatgcca
acaagagcttgcttgacagaagactgatatagctgtctcctgagaggctc
tgccagtacctgactaatacagaagtggatactcacagacatccattaga
tggatcacagggtccccaatgaaggagctagagaaagtacccaaggagct

gaattctccattacatcagcagaaggaaaataatgattacatgccctcct
tgccccaaataaaacttgcatatattcaaattcacttgtgcaagtataca
catactcatacgtacaccctggatcaacagaaaagtcttgctaggctgct
tacactcagtatcttttaattgttacatgctataaaatgaaccacacaga
agaatcctcagatatatgtgagatattatagcatcctttttcctaagcaa
aaattatatcaccattaaattgttcaatttaagttgttaaaatattgagg
aaacaaacattcatttggaagattacaatataaattttaaattttgtgac
aattttaaagatattttaaaactataaagaagccatcacttaaaaatgcc
atcaacttggaaacatatatgatccaagacaaaattacagaatccataca
cattgcagtatattgaatgactatttaataaatctcagtttaaacaaatc
tatatttgttggccaggttttacgagtacttcagaacctagcccattcaa
tgccattttgtgactagttagccttggtgccagggctagcaagctccctt
cagtaccgtcgacaagtttactactcttttcctgggaactgactttgtgt
gaactctacttgttaggagatgtgcgactcctgcaacagatcccatctgt
atgtacctggattcttgttggtcagacatacagccagatgctcactttct
cagaggccttcctagaaaattttataagcactcattgaaattctatccaa
ttttaattctcagcactgacagtcgcctctttatttctttgtgtaattta
ttaatgttattttctctaaaggataaaatgtcaaatctggtgagcaatca
aaaacagtattaataacttatgtttcaggtctccagagacccaatttagt
ggaggtttccaaccgttgcactcctggcattgagctctgcatttgacatc
tatgcttctgggaggagcttatcacacataggtactcagtgaatccatta
ttgacatatacgctcaataagaacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51159054_51160141
seq2: B6Ng01-320K18.g_68_1144

seq1  GAATTCTCCATTACATCAGCAGAAGGAAAATAATGATTACATGCCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTACATCAGCAGAAGGAAAATAATGATTACATGCCCTCCT  50

seq1  TGCCCCAAATAAAACTTGCATATATTCAAATTCACTTGTGCAAGTATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAAATAAAACTTGCATATATTCAAATTCACTTGTGCAAGTATACA  100

seq1  CATACTCATACGTACACCCTGGATCAACAGAAAAGTCTTGCTAGGCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCATACGTACACCCTGGATCAACAGAAAAGTCTTGCTAGGCTGCT  150

seq1  TACACTCAGTATCTTTTAATTGTTACATGCTATAAAATGAACCACACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCAGTATCTTTTAATTGTTACATGCTATAAAATGAACCACACAGA  200

seq1  AGAATCCTCAGATATATGTGAGATATTATAGCATCCTTTTTCCTAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTCAGATATATGTGAGATATTATAGCATCCTTTTTCCTAAGCAA  250

seq1  AAATTATATCACCATTAAATTGTTCAATTTAAGTTGTTAAAATATTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATCACCATTAAATTGTTCAATTTAAGTTGTTAAAATATTGAGG  300

seq1  AAACAAACATTCATTTGGAAGATTACAATATAAATTTTAAATTTTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACATTCATTTGGAAGATTACAATATAAATTTTAAATTTTGTGAC  350

seq1  AATTTTAAAGATATTTTAAAACTATAAAGAAGCCATCACTTAAAAATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAGATATTTTAAAACTATAAAGAAGCCATCACTTAAAAATGCC  400

seq1  ATCAACTTGGAAACATATATGATCCAAGACAAAATTACAGAATCCATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTGGAAACATATATGATCCAAGACAAAATTACAGAATCCATACA  450

seq1  CATTGCAGTATATTGAATGACTATTTAATAAATCTCAGTTTAAACAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGTATATTGAATGACTATTTAATAAATCTCAGTTTAAACAAATC  500

seq1  TATATTTGTTGGCCAGGTTTTACGAGTACTTCAGAACCTAGCCCATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGTTGGCCAGGTTTTACGAGTACTTCAGAACCTAGCCCATTCAA  550

seq1  TGCCATTTTGTGACTAGTTAGCCTTGGTGCCAGGGCTAGCAAGCTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTGTGACTAGTTAGCCTTGGTGCCAGGGCTAGCAAGCTCCCTT  600

seq1  CAGTACCGTCGACAAGTTTACTACTCTTTTCCTGGGAACTGACTTTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCGTCGACAAGTTTACTACTCTTTTCCTGGGAACTGACTTTGTGT  650

seq1  GAACTCTACTTGTTAGGAGATGTGCGACTCCTGCAACAGATCCCATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTACTTGTTAGGAGATGTGCGACTCCTGCAACAGATCCCATCTGT  700

seq1  ATGTACCTGGATTCTTGTTGGTCAGACATACAGCCAGATGCTCACTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTGGATTCTTGTTGGTCAGACATACAGCCAGATGCTCACTTTCT  750

seq1  CAGAGGCCTTCCTAGAAAATTTTATAAGCACTCATTGAAATTCTATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCTTCCTAGAAAATTTTATAAGCACTCATTGAAATTCTATCCAA  800

seq1  TTTTAATTCTCAGCACTGACAGTCGCCTCTTTATTTCTTTGTGTAATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTCTCAGCACTGACAGTCGCCTCTTTATTTCTTTGTGTAATTTA  850

seq1  TTAATGTTATTTTCTCT-AAGGATAAAATGTCAAATCTGGTGAGCAATCA  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAATGTTATTTTCTCTAAAGGATAAAATGTCAAATCTGGTGAGCAATCA  900

seq1  AAAACAGTATTAATAACTTATGTTTCAGGGTCTCCAGAGAACCCAAATTT  949
      ||||||||||||||||||||||||||| ||||||||||||  || |||||
seq2  AAAACAGTATTAATAACTTATGTTTCA-GGTCTCCAGAGA--CCCAATTT  947

seq1  AGTGGAGGTTTCCCAAACCGTTGCACTCCTGGCATTGAGCTCTGCATTTG  999
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AGTGGAGGTTTCC--AACCGTTGCACTCCTGGCATTGAGCTCTGCATTTG  995

seq1  ACAATCTATGGCTTCTGGGAGGAGCTTATCACACATAGGGTAACTCCAGT  1049
      || |||||| |||||||||||||||||||||||||||||   ||| ||||
seq2  AC-ATCTAT-GCTTCTGGGAGGAGCTTATCACACATAGG--TACT-CAGT  1040

seq1  GAAATCCATTAATATGACATATAACGCTCA--TAGAACAGC  1088
      | |||||||||   |||||||| |||||||   ||||||||
seq2  G-AATCCATTA--TTGACATAT-ACGCTCAATAAGAACAGC  1077