BAC Information

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BAC

Clone NameB6Ng01-320L21
Chromosome17 (Build37)
Map Location 23,846,316 - 23,846,514
singlet/doubletsinglet
Overlap gene1520401A03Rik
Upstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080
Downstream genePkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320L21.bB6Ng01-320L21.g
ACCGA110035GA110036
length960452
definitionB6Ng01-320L21.b B6Ng01-320L21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttttaggatctgtgcttgctccggtcggcccccgatcgctcc
agtcaccccactcaactctgcttgcttaattccaggttgttctggaccag
agatttatttattattatacataagtacactgtagctgacttcagacaca
ccaaaagagggtgtcagatatcattatggatggttgtgagccaccatgtg
gttgctgggaattgaactcaggacctttggaagagcagtcttacctgcta
agccatcttgccagcccagttgattgttttattagctgcacagatgcttt
gtaaatgaatgaaataccacttgtcaattattagccttcattctgggaat
aatggagtcctattcataaattcatttcccaatttatatcatgtagggga
gtacctgttacagtagtttcagtgtttcaagttttacagttaagcctatg
atctatttggagttagtttttatataatgtagtagatctgggtctaattc
tatacctcttcaggtgaacatctaattttctgagcaccatttgttgaaaa
tactttcttttcttcagtttatgtttttagcactttgtcaaatttcagat
ggctgaaatttgaagtcatgtgtactcatgcctgggtcttttatttttgt
tgcgttgatacacatgtctgtttttgagccagtaccatattgtttttatt
accatggctctgtaatatatcttgagatctggaattgcaatccttccagt
aaaattctttttattcaggatttctttggctatctgggatcttctgtagt
tccatatgaattttaggttttatttttctgtttctgtagagaatgagata
ggaattttgattggtattgcactgagtctataaagggattttggtagaat
aatcattttcacaatgttgattctattaatccatgagcatggaatgtctt
tgattttcta
agtagctcagatacaaatactgaagaagactcaagatgaaatgaggtgga
attgaaaatttcaatgaaataattagaaaacacagagagtaaccttacta
gtataatgggtatagtacaaggcaaattatcaagacttgaagataaagca
gtaacagtattgagccagtcaatcatggaatgtgaaaaaaattaaaacta
atgaaaggattaagcaggaacttaattttattctgtaagttctgttcctc
cagagaacactgactaatagagcaaccctaattaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagtcta
ccccttatcatgaatcaatggaaggagagggccttggtctgaaggctcaa
tagatgcaccagtataggagaatcaagggcggggaggtgggagtgggtgt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23846316_23846514
seq2: B6Ng01-320L21.b_106_312

seq1  CTCAACTCTGCTTGC---------------TCTGGCCCAAAGATTGATTT  35
      |||||||||||||||               ||||| ||| ||||| ||||
seq2  CTCAACTCTGCTTGCTTAATTCCAGGTTGTTCTGGACCAGAGATTTATTT  50

seq1  ATTATTATACATAAGTACACTGTAGCTGTCTTCAGACACCCCTGAAGAGG  85
      |||||||||||||||||||||||||||| |||||||||| ||  ||||||
seq2  ATTATTATACATAAGTACACTGTAGCTGACTTCAGACACACCAAAAGAGG  100

seq1  GCATCAGATCTCATAACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGA  135
      |  |||||| |||| |  ||||||||||||||||||||||||||||||||
seq2  GTGTCAGATATCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGA  150

seq1  TTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCTGCTGAGC  185
       |||||||||||||||||||||||||||       ||||||||||| |||
seq2  ATTGAACTCAGGACCTTTGGAAGAGCAG-------TCTTACCTGCTAAGC  193

seq1  CATCTCGCCAGCCC  199
      ||||| ||||||||
seq2  CATCTTGCCAGCCC  207