BAC Information

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BAC

Clone NameB6Ng01-321D23
Chromosome17 (Build37)
Map Location 22,338,069 - 22,450,575
singlet/doubletdoublet
Overlap geneEG240038, EG631624
Upstream geneEG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007
Downstream gene6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321D23.bB6Ng01-321D23.g
ACCGA110407GA110408
length1,1641,158
definitionB6Ng01-321D23.b B6Ng01-321D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,338,069 - 22,339,235)(22,449,429 - 22,450,575)
sequence
gaattctctgatgagttctaaggctgcttttgtagctaaagcatttttca
cattcattacatttgtaaggtttctctcctgtatgaattctctgatgtct
tctaagatcaccaacttgaatgaagcatttctcacattcactacatttgt
aaggtttctttcctgtatgatacttctgatgaatactaagactgcctttt
tgggtaaaggatttgtcacattcattacatttgtaaaatttttctcctgt
atgagttgtctgatgttttctaaaccagcatttcttggcaaaacatttgg
cacattcactacatttgtaaggtttctttacacttttggtttgtttcaac
atgaggatttctttagagtcaaaaaccttatcaagctttgcaccattgta
ttctttctttcctatgttgattccttgatttagactaatggtagagcaca
aattgaaacagtttacatggttttcatatttgcaaggttctctgttgttt
tcagtttcatgtctgtttaggtttgatgattcaacagatgtagccctgag
gttagttttataaggtgtacttccggtgaactcatggatgatcttgtcaa
gctcatgacattcataagatttcacttgggtatttacatgttcgaggaca
atatgctgtaggtcttgatccaacatcttctcaaatttaggacacatgca
atgattctctgaaaaaaaaatgcatttagagatgacagtgattactggat
gagtaagacaatatcccatgtttcctgacattttctaacttaaattagtg
attctcaagcatggaactctcaaaagtggtctttcttgtttcacaatcct
tacatggctgcttagaacaatctcaaatttcatgcatatcaatagacagg
aaacaatagccttctatttcttatttaccactgtgcttggcagaaagtat
aaagaataggtgatttagaagtaaaggactttgacaatgaatctccctga
atgaacatgtaaaaaaagtttctctgttttctattatgttttgtgacaga
gtaacaaagtgtagttgggtcagctaggaattcattatgttattccacac
tggcatcaactcatgatataaaaagcatggctgtacagaataaacataga
acccacaggttcaa
gaattcctagaccctgcagacagggcttttggcagagatctcttttggac
agtgcagcagtctggtttctgttagtgacaatagttttcctggagtctcc
ctagctcttcctcagagttcaagggagaatgactgtgcatgtgtctgacc
ctacatgcttagaggaaaagagacatttttatttctgatattttctctct
ccttcatgtttatccttttttaggcatcctttatttttgttccatgaaaa
gttctgggtgctttctgaagactctttcccttgtgcaggtatcacactca
tcaggtagttcagctcacctgtgaaactgagaaccctggatggtgaagag
aggaaactagcaaaggatccaggtatgttagagagaatgaagaagggatg
gggaggggctcaagtcccagtacaaagaggacatgagatttgttttgcca
gattctatttcattctaaatatttctagataattgcagtgagaataacat
cagaatattcccactgtaatttttagaagaccttttatggaagaattaat
tcacagaggcacatgtaatttaattggtttgtatgtgagggatattgtcc
ccctcccattcacatccctaatcatatctttttaccagtattaaatattt
tctttgttacaattttaatgtattgtttagtcagaacacttgatgcctgt
tagtttttttctgctcatggagttttggagcattgtgtagttcctttcag
ttgttctatctttttatggttaatttctcagttccctaaaataatgccag
caagattttgataagatttgtttagtaacttctcactgatacctgctgta
gtctgtcttcttgttggttttgcaagatttgcattgctataattttaata
tactttgaaatcacccttgggtttgatacttctctcatatatttaaaaat
tttgtggtttctcattttataaatttttgtaatgattctctatattaaaa
atgtctctgtgattttgggtattttatattttcttcatattggactgaca
aggttgctaacagttacctcagatttacaaggtctctttatatgtgtttc
atggtgtcctttctcatctgagtcaacttgcgatatttttaaagaaaact
gttttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22338069_22339235
seq2: B6Ng01-321D23.b_45_1208

seq1  GAATTCTCTGATGAGTTCTAAGGCTGCTTTTGTAGCTAAAGCATTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGAGTTCTAAGGCTGCTTTTGTAGCTAAAGCATTTTTCA  50

seq1  CATTCATTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGTCT  100

seq1  TCTAAGATCACCAACTTGAATGAAGCATTTCTCACATTCACTACATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATCACCAACTTGAATGAAGCATTTCTCACATTCACTACATTTGT  150

seq1  AAGGTTTCTTTCCTGTATGATACTTCTGATGAATACTAAGACTGCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTTTCCTGTATGATACTTCTGATGAATACTAAGACTGCCTTTT  200

seq1  TGGGTAAAGGATTTGTCACATTCATTACATTTGTAAAATTTTTCTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGGATTTGTCACATTCATTACATTTGTAAAATTTTTCTCCTGT  250

seq1  ATGAGTTGTCTGATGTTTTCTAAACCAGCATTTCTTGGCAAAACATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGTCTGATGTTTTCTAAACCAGCATTTCTTGGCAAAACATTTGG  300

seq1  CACATTCACTACATTTGTAAGGTTTCTTTACACTTTTGGTTTGTTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCACTACATTTGTAAGGTTTCTTTACACTTTTGGTTTGTTTCAAC  350

seq1  ATGAGGATTTCTTTAGAGTCAAAAACCTTATCAAGCTTTGCACCATTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATTTCTTTAGAGTCAAAAACCTTATCAAGCTTTGCACCATTGTA  400

seq1  TTCTTTCTTTCCTATGTTGATTCCTTGATTTAGACTAATGGTAGAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCCTATGTTGATTCCTTGATTTAGACTAATGGTAGAGCACA  450

seq1  AATTGAAACAGTTTACATGGTTTTCATATTTGCAAGGTTCTCTGTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAACAGTTTACATGGTTTTCATATTTGCAAGGTTCTCTGTTGTTT  500

seq1  TCAGTTTCATGTCTGTTTAGGTTTGATGATTCAACAGATGTAGCCCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCATGTCTGTTTAGGTTTGATGATTCAACAGATGTAGCCCTGAG  550

seq1  GTTAGTTTTATAAGGTGTACTTCCGGTGAACTCATGGATGATCTTGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTTATAAGGTGTACTTCCGGTGAACTCATGGATGATCTTGTCAA  600

seq1  GCTCATGACATTCATAAGATTTCACTTGGGTATTTACATGTTCGAGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGACATTCATAAGATTTCACTTGGGTATTTACATGTTCGAGGACA  650

seq1  ATATGCTGTAGGTCTTGATCCAACATCTTCTCAAATTTAGGACACATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGTAGGTCTTGATCCAACATCTTCTCAAATTTAGGACACATGCA  700

seq1  ATGATTCTCTGAAAAAAAAATGCATTTAGAGATGACAGTGATTACTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTCTGAAAAAAAAATGCATTTAGAGATGACAGTGATTACTGGAT  750

seq1  GAGTAAGACAATATCCCATGTTTCCTGACATTTTCTAACTTAAATTAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGACAATATCCCATGTTTCCTGACATTTTCTAACTTAAATTAGTG  800

seq1  ATTCTCAAGCATGGAACTCTCAAAAGTGGTCTTTCTTGTTTCACAATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAGCATGGAACTCTCAAAAGTGGTCTTTCTTGTTTCACAATCCT  850

seq1  TACATGGCTGCTTAGAACAATCTCAAATTTCATGCATATCAATAGACAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCTGCTTAGAACAATCTCAAATTTCATGCATATCAATAGACAGG  900

seq1  AAACAATAGCCTTCTATTTCTTATTTACCACTGTGCTTGGCAGAAAGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAGCCTTCTATTTCTTATTTACCACTGTGCTTGGCAGAAAGTAT  950

seq1  AAAGAATAGGTGATTTAGAAGTAAAGGACTTTGACAATGAATCTCCCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGGTGATTTAGAAGTAAAGGACTTTGACAATGAATCTCCCTGA  1000

seq1  ATGAACATGTAAAAAAAGTTTCTCTGTTTTCTTATTTATGTTTTGTGACA  1050
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  ATGAACATGTAAAAAAAGTTTCTCTGTTTTCT--ATTATGTTTTGTGACA  1048

seq1  GAGTAACAAAGTGTAGGTTGGGTCAGCTAGGAATTCATTATG-TATTCCA  1099
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  GAGTAACAAAGTGTA-GTTGGGTCAGCTAGGAATTCATTATGTTATTCCA  1097

seq1  CACTGGCATGGAACTCATGATATAAAAGCCAT-GCTGTACCAGGATTAAA  1148
      |||||||||  ||||||||||||||||  ||| |||||||   || ||||
seq2  CACTGGCAT-CAACTCATGATATAAAAAGCATGGCTGTAC--AGAATAAA  1144

seq1  CATAGAAACCACA-GTTCAA  1167
      ||||||| ||||| ||||||
seq2  CATAGAACCCACAGGTTCAA  1164

seq1: chr17_22449429_22450575
seq2: B6Ng01-321D23.g_66_1223 (reverse)

seq1  TTGAAAACATTTTTCTTTAAAAAATATGGAATGTTGACATCAG--TAGAA  48
      ||||||||| |||||||| |||||||| | | |||||| ||||   ||||
seq2  TTGAAAACAGTTTTCTTT-AAAAATATCGCAAGTTGAC-TCAGATGAGAA  48

seq1  --GACAC--AGGAACACATA-AAAGA---CTTGT-AATCTGA-GTTACTG  88
        |||||   | |||||||| |||||   ||||| ||||||| || ||||
seq2  AGGACACCATGAAACACATATAAAGAGACCTTGTAAATCTGAGGTAACTG  98

seq1  TTAGCAA-CTTGTCAGTCAAATATGAAG-AAATATAAAATA-CCAAAATC  135
      ||||||| |||||||||| ||||||||| |||||||||||| ||||||||
seq2  TTAGCAACCTTGTCAGTCCAATATGAAGAAAATATAAAATACCCAAAATC  148

seq1  ACAGAGACATTTTTAAATATAGAGAAATCATTACAAAAATTTATAAAATG  185
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  ACAGAGACATTTTT-AATATAGAG-AATCATTACAAAAATTTATAAAATG  196

seq1  AGAAACCACAAAAATTTTTAAATATATGAGAGAAGTATCAAACCCAAGGG  235
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAC-AAAATTTTTAAATATATGAGAGAAGTATCAAACCCAAGGG  245

seq1  TGATTTCAAAGTATATTAAAATTATAGCAATGCAAATCTTGCAAAACCAA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAAAGTATATTAAAATTATAGCAATGCAAATCTTGCAAAACCAA  295

seq1  CAAGAAGACAGACTACAGCAGGTATCAGTGAGAAGTTACTAAACAAATCT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGACAGACTACAGCAGGTATCAGTGAGAAGTTACTAAACAAATCT  345

seq1  TATCAAAATCTTGCTGGCATTATTTTAGGGAACTGAGAAATTAACCAT-A  384
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TATCAAAATCTTGCTGGCATTATTTTAGGGAACTGAGAAATTAACCATAA  395

seq1  AAAGATAGAACAACTGAAAGGAACTACACAATGCTCCAAAACTCCATGAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGAACAACTGAAAGGAACTACACAATGCTCCAAAACTCCATGAG  445

seq1  CAGAAAAAAACTAACAGGCATCAAGTGTTCTGACTAAACAATACATTAAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAACTAACAGGCATCAAGTGTTCTGACTAAACAATACATTAAA  495

seq1  ATTGTAACAAAGAAAATATTTAATACTGGTAAAAAGATATGATTAGGGAT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAACAAAGAAAATATTTAATACTGGTAAAAAGATATGATTAGGGAT  545

seq1  GTGAATGGGAGGGGGACAATATCCCTCACATACAAACCAATTAAATTACA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGGGAGGGGGACAATATCCCTCACATACAAACCAATTAAATTACA  595

seq1  TGTGCCTCTGTGAATTAATTCTTCCATAAAAGGTCTTCTAAAAATTACAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCTGTGAATTAATTCTTCCATAAAAGGTCTTCTAAAAATTACAG  645

seq1  TGGGAATATTCTGATGTTATTCTCACTGCAATTATCTAGAAATATTTAGA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATATTCTGATGTTATTCTCACTGCAATTATCTAGAAATATTTAGA  695

seq1  ATGAAATAGAATCTGGCAAAACAAATCTCATGTCCTCTTTGTACTGGGAC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGAATCTGGCAAAACAAATCTCATGTCCTCTTTGTACTGGGAC  745

seq1  TTGAGCCCCTCCCCATCCCTTCTTCATTCTCTCTAACATACCTGGATCCT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCCCTCCCCATCCCTTCTTCATTCTCTCTAACATACCTGGATCCT  795

seq1  TTGCTAGTTTCCTCTCTTCACCATCCAGGGTTCTCAGTTTCACAGGTGAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTTTCCTCTCTTCACCATCCAGGGTTCTCAGTTTCACAGGTGAG  845

seq1  CTGAACTACCTGATGAGTGTGATACCTGCACAAGGGAAAGAGTCTTCAGA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTACCTGATGAGTGTGATACCTGCACAAGGGAAAGAGTCTTCAGA  895

seq1  AAGCACCCAGAACTTTTCATGGAACAAAAATAAAGGATGCCTAAAAAAGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCAGAACTTTTCATGGAACAAAAATAAAGGATGCCTAAAAAAGG  945

seq1  ATAAACATGAAGGAGAGAGAAAATATCAGAAATAAAAATGTCTCTTTTCC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATGAAGGAGAGAGAAAATATCAGAAATAAAAATGTCTCTTTTCC  995

seq1  TCTAAGCATGTAGGGTCAGACACATGCACAGTCATTCTCCCTTGAACTCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCATGTAGGGTCAGACACATGCACAGTCATTCTCCCTTGAACTCT  1045

seq1  GAGGAAGAGCTAGGGAGACTCCAGGAAAACTATTGTCACTAACAGAAACC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGCTAGGGAGACTCCAGGAAAACTATTGTCACTAACAGAAACC  1095

seq1  AGACTGCTGCACTGTCCAAAAGAGATCTCTGCCAAAAGCCCTGTCTGCAG  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTGCACTGTCCAAAAGAGATCTCTGCCAAAAGCCCTGTCTGCAG  1145

seq1  GGTCTAGGAATTC  1147
      |||||||||||||
seq2  GGTCTAGGAATTC  1158