BAC Information

Click to search

BAC

Clone NameB6Ng01-321N01
Chromosome17 (Build37)
Map Location 46,789,824 - 46,943,391
singlet/doubletdoublet
Overlap geneCul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203
Upstream geneCapn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2
Downstream geneA330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321N01.bB6Ng01-321N01.g
ACCGA110825GA110826
length8181,114
definitionB6Ng01-321N01.b B6Ng01-321N01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,942,594 - 46,943,391)(46,789,824 - 46,790,930)
sequence
gaattctgggaaggaaaaactgacaaagttgagaggggtgtgtggatata
ccaagactggctggtctacaagatccaaactggaatttcgcattcagtta
aggccctggttttccccattaaacttcaaatcctgtctttctaatcttgg
agaactaaattgagccaggggcttctcagtgtatttggaaaggcccttgc
gctgcattagaaagcatcagtgcagcatggtccccgattgtgagcagagg
actttcccctcggccgaccagggtcccgccccctgcgagctttccagttt
tccctactgacaacgggctcactgtggagcccggctgacctggtgctctt
gtgtaggccaggctgtccttaaaccacacagcctgtctctgcctcccaag
tgctgaggtgagaggggtgagcactcagatccaaatccacccctttaaaa
tattttttaaaatgttttttctgtttcatttttaaaagatatgtttatcg
attggttgattgattggtgtaatatatgtgagtacactgtcactatcttc
agacataccagaagaaggcatcagatctcattacagatggttgtgagtca
ccatgtggttgctggaatttgaactcaggacctctggaagagcagtcagt
gctcttaactgccaagctgtctctcccagccccctcctatttccctaaga
tttccttttttaaattatgtgtgtatgggcaggcagcacatgtgagtgta
agtgaccagaaaggtgctgggtccttcttcgggctggagttagagacagc
tggaaaccctcctgaaaa
gaattcagtatggccatgggcactctgatctctgagctggtgcaggccat
gcgctgggacggggcctcaagcagaccagagagttcttcctcctccacct
tccagcctcggccagcacagttccgcccctacacccagcgtttcaggagg
tcgaggcggtttcgcccccgtgcctcgtttgccagttttaatacctatgc
cttgtatgtgcgggacacgctgcggcccgggatgcgggtacggatgctgg
agaattacgaggagatcgctgctggggatgagggccagttccgacagagc
aatgatggcgttcccccagcgcaggtatgggctctacagactgtgacact
gaattttcattctgggtgaggcatccaatacacactgggcattctatact
gcggctcagttaagttccaaaggacacggagcccttggaatatgggagca
aaggtgcgtcagacccaagaagaaaccgatggattagaatttggaagatg
ggctttctgaggccagatggaagtactgagccatggtatctaagacagag
aggatccaggccgtggtaggatgcttgtaatcccagaggtagagagaggc
agaaagatagggagttcaaggccagccatggccacatagcaatgttgagg
tcagtttgggacccccgtctgaaagaaaggaaaaatgaaattagactaaa
gggcataaggaagtaaagggcattgctgaggaggaaggtgaggctgtctg
tatactgtatacattgtttgcatatatagtctatatagtctatagacagt
ggtcaccttatgggccttagctggtcaatagcaggtcctcttccccttcc
tttcctcctgcctccaaccctccaggtgttgtgggattcaacaggccata
cctactggggtgcactggcacattgctggagatcttgggctttgaggaag
acatcgaggatgtgattgatattgaagagtacaggagctaggggccaatg
ggagcactggagcatcgttggagctctgggctgaggttggctcttgagca
gaaggagattaacctaacctggggcagtccgggaactggccgttgccaca
ataccatttattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46942594_46943391
seq2: B6Ng01-321N01.b_46_850 (reverse)

seq1  TTCCAGCTGTCTCTAACTCCAGCCCG-AGAAGG-GCCAGCACCTTTCTGG  48
      |||||||||||||||||||||||||| ||||||  |||||||||||||||
seq2  TTCCAGCTGTCTCTAACTCCAGCCCGAAGAAGGACCCAGCACCTTTCTGG  50

seq1  TCACTTACACTCACATGTGCTGCCTG-CCATACACACATAATTT-AAAAA  96
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  TCACTTACACTCACATGTGCTGCCTGCCCATACACACATAATTTAAAAAA  100

seq1  GGAAATCTTA-GGAAATAGGA-GGGGCT-GGAGAGACAGCTTGGCAGTTA  143
      |||||||||| |||||||||| |||||| |||||||||||||||||||||
seq2  GGAAATCTTAGGGAAATAGGAGGGGGCTGGGAGAGACAGCTTGGCAGTTA  150

seq1  AGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATTCCAGCAACCA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATTCCAGCAACCA  200

seq1  CATGGTGACTCACAACCATCTGTAATGAGATCTGATGCCTTCTTCTGGTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGACTCACAACCATCTGTAATGAGATCTGATGCCTTCTTCTGGTA  250

seq1  TGTCTGAAGATAGTGACAGTGTACTCACATATATTACACCAATCAATCAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAGATAGTGACAGTGTACTCACATATATTACACCAATCAATCAA  300

seq1  CCAATCGATAAACATATCTTTTAAAAATGAAACAGAAAAAACATTTTAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCGATAAACATATCTTTTAAAAATGAAACAGAAAAAACATTTTAAA  350

seq1  AAATATTTTAAAGGGGTGGATTTGGATCTGAGTGCTCACCCCTCTCACCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTAAAGGGGTGGATTTGGATCTGAGTGCTCACCCCTCTCACCT  400

seq1  CAGCACTTGGGAGGCAGAGACAGGCTGTGTGGTTTAAGGACAGCCTGGCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGGAGGCAGAGACAGGCTGTGTGGTTTAAGGACAGCCTGGCC  450

seq1  TACACAAGAGCACCAGGTCAGCCGGGCTCCACAGTGAGCCCGTTGTCAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGAGCACCAGGTCAGCCGGGCTCCACAGTGAGCCCGTTGTCAGT  500

seq1  AGGGAAAACTGGAAAGCTCGCAGGGGGCGGGACCCTGGTCGGCCGAGGGG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAACTGGAAAGCTCGCAGGGGGCGGGACCCTGGTCGGCCGAGGGG  550

seq1  AAAGTCCTCTGCTCACAATCGGGGACCATGCTGCACTGATGCTTTCTAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTCTGCTCACAATCGGGGACCATGCTGCACTGATGCTTTCTAAT  600

seq1  GCAGCGCAAGGGCCTTTCCAAATACACTGAGAAGCCCCTGGCTCAATTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGCAAGGGCCTTTCCAAATACACTGAGAAGCCCCTGGCTCAATTTA  650

seq1  GTTCTCCAAGATTAGAAAGACAGGATTTGAAGTTTAATGGGGAAAACCAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCAAGATTAGAAAGACAGGATTTGAAGTTTAATGGGGAAAACCAG  700

seq1  GGCCTTAACTGAATGCGAAATTCCAGTTTGGATCTTGTAGACCAGCCAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAACTGAATGCGAAATTCCAGTTTGGATCTTGTAGACCAGCCAGT  750

seq1  CTTGGTATATCCACACACCCCTCTCAACTTTGTCAGTTTTTCCTTCCCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTATATCCACACACCCCTCTCAACTTTGTCAGTTTTTCCTTCCCAG  800

seq1  AATTC  798
      |||||
seq2  AATTC  805

seq1: chr17_46789824_46790930
seq2: B6Ng01-321N01.g_68_1181

seq1  GAATTCAGTATGGCCATGGGCACTCTGATCTCTGAGCTGGTGCAGGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATGGCCATGGGCACTCTGATCTCTGAGCTGGTGCAGGCCAT  50

seq1  GCGCTGGGACGGGGCCTCAAGCAGACCAGAGAGTTCTTCCTCCTCCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGGACGGGGCCTCAAGCAGACCAGAGAGTTCTTCCTCCTCCACCT  100

seq1  TCCAGCCTCGGCCAGCACAGTTCCGCCCCTACACCCAGCGTTTCAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTCGGCCAGCACAGTTCCGCCCCTACACCCAGCGTTTCAGGAGG  150

seq1  TCGAGGCGGTTTCGCCCCCGTGCCTCGTTTGCCAGTTTTAATACCTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCGGTTTCGCCCCCGTGCCTCGTTTGCCAGTTTTAATACCTATGC  200

seq1  CTTGTATGTGCGGGACACGCTGCGGCCCGGGATGCGGGTACGGATGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGTGCGGGACACGCTGCGGCCCGGGATGCGGGTACGGATGCTGG  250

seq1  AGAATTACGAGGAGATCGCTGCTGGGGATGAGGGCCAGTTCCGACAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACGAGGAGATCGCTGCTGGGGATGAGGGCCAGTTCCGACAGAGC  300

seq1  AATGATGGCGTTCCCCCAGCGCAGGTATGGGCTCTACAGACTGTGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGCGTTCCCCCAGCGCAGGTATGGGCTCTACAGACTGTGACACT  350

seq1  GAATTTTCATTCTGGGTGAGGCATCCAATACACACTGGGCATTCTATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCATTCTGGGTGAGGCATCCAATACACACTGGGCATTCTATACT  400

seq1  GCGGCTCAGTTAAGTTCCAAAGGACACGGAGCCCTTGGAATATGGGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCAGTTAAGTTCCAAAGGACACGGAGCCCTTGGAATATGGGAGCA  450

seq1  AAGGTGCGTCAGACCCAAGAAGAAACCGATGGATTAGAATTTGGAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCGTCAGACCCAAGAAGAAACCGATGGATTAGAATTTGGAAGATG  500

seq1  GGCTTTCTGAGGCCAGATGGAAGTACTGAGCCATGGTATCTAAGACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTGAGGCCAGATGGAAGTACTGAGCCATGGTATCTAAGACAGAG  550

seq1  AGGATCCAGGCCGTGGTAGGATGCTTGTAATCCCAGAGGTAGAGAGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAGGCCGTGGTAGGATGCTTGTAATCCCAGAGGTAGAGAGAGGC  600

seq1  AGAAAGATAGGGAGTTCAAGGCCAGCCATGGCCACATAGCAATGTTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATAGGGAGTTCAAGGCCAGCCATGGCCACATAGCAATGTTGAGG  650

seq1  TCAGTTTGGGACCCCCGTCTGAAAGAAAGGAAAAATGAAATTAGACTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGGGACCCCCGTCTGAAAGAAAGGAAAAATGAAATTAGACTAAA  700

seq1  GGGCATAAGGAAGTAAAGGGCATTGCTGAGGAGGAAGGTGAGGCTGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAAGGAAGTAAAGGGCATTGCTGAGGAGGAAGGTGAGGCTGTCTG  750

seq1  TATACTGTATACATTG-TTGCATATATAGTCTATATAGTCTATAGACAGT  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATACTGTATACATTGTTTGCATATATAGTCTATATAGTCTATAGACAGT  800

seq1  GGTCACCTTATGGGCCTTAGCTGGTCAATAGCAGGTCCTCTTCCCCTTCC  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTCACCTTATGGGCCTTAGCTGGTCAATAGCAGGTCCTCTTCCCCTT-C  849

seq1  CTTTCCTCCTGCCTCCAACCCTCCAGGTGTTGTGGGATTCAACAGGCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCTGCCTCCAACCCTCCAGGTGTTGTGGGATTCAACAGGCCAT  899

seq1  ACCTACT-GGGTGCACTGGCACA-TGCTGGAGATCTTGGGCTTTGAGGAA  947
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCTACTGGGGTGCACTGGCACATTGCTGGAGATCTTGGGCTTTGAGGAA  949

seq1  GACATCGAGGATGTGATTGATATTGAAGAGTTACAGGAGCTAGGGGCCAA  997
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACATCGAGGATGTGATTGATATTGAAGAG-TACAGGAGCTAGGGGCCAA  998

seq1  T-GGAGCACT-GAGCATCGGT-GAGCTCTGGGCTGGAGGTTGGCTC-TGA  1043
      | |||||||| |||||||| | |||||||||||| ||||||||||| |||
seq2  TGGGAGCACTGGAGCATCGTTGGAGCTCTGGGCT-GAGGTTGGCTCTTGA  1047

seq1  GCAGAGAGAGATAGACCT-ACCT-GGGCAGGCCGTGACTTGGCTGTTGCC  1091
      |||||  |||||  |||| |||| |||||| ||| ||  |||| ||||||
seq2  GCAGAAGGAGATTAACCTAACCTGGGGCAGTCCGGGAACTGGCCGTTGCC  1097

seq1  AC-ATACCATTTACTAC  1107
      || |||||||||| |||
seq2  ACAATACCATTTATTAC  1114