BAC Information

Click to search

BAC

Clone NameB6Ng01-322G19
Chromosome17 (Build37)
Map Location 56,337,008 - 56,501,536
singlet/doubletdoublet
Overlap geneDpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
Upstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e
Downstream genePtprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322G19.bB6Ng01-322G19.g
ACCGA111268GA111269
length8741,019
definitionB6Ng01-322G19.b B6Ng01-322G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,337,008 - 56,337,882)(56,500,530 - 56,501,536)
sequence
gaattcagtgcaccccggcagggtacacagagtcggtgacattcttgtga
cactgagccactgccaggagagacatggagacagagccctggtcagcacc
ttgggtcacttggtgccaagcagccaggacatgaggcctggtaccaggcc
ctcagagatggcatcccagtcactgtgtcccttgagcccatggctgccac
agcctgctgtggtaccatgtggcacttcttaactatgctgcttacagaag
atgacccgtcttcaaggaaggcttgagcattgtctggggacatgtgtagc
tgtcacaactgggggagctgctagcaggcagcaagcagaacaggaatgct
gctctctgaatgtacctctggagactgggtctgtgcaaaggccctggggt
agaggacacagctccactgcacagcctagaagtgcccccagcccctggag
gtcacttgccatcatgcatgactttctctacatcccccagggccagagac
accatctttaattccccttgcattattacttgacgctccagactcagccg
tgggagagtggagtcacaggtgagcaccaccacatagctaccattttcct
tctcagacattagcatcttgactcctagagccaactgcttgggccaaaga
ccagagtatctgaaggtctgaagccatatggctgaggcttgggacacaga
catggccaacaggcaaatagaagtgagcaggtatggccatacaccaagaa
aagaacaagatgaaactaaatgcaggtgacacccctcagtacacaggggc
caaactctaatgccctggtggcagctcctagtctcaaacctgggtgtgtg
tgtgtgtgtgtgtgtgagggggct
gaattcagtggctcagggataaagagatggcccagtagttaagagcactg
gctaatcttccaaagtacctagattcaattcccagcacccatatgacagc
tcactccagttccagggattggacagacacatatgcaggcaaaacaccaa
tgcacataaaataaaaataagtcattattaaaaactcattggggtgagtc
tggcctcatcaggagatggcccctccaaggtcagggctgcagaaagcaag
ggtgttcccacacagcctgaaggcaaggggctactgtaggctgcctagag
agcccaaagggttcatacactccacttctgagccacagagccccaggcac
acagataccacagagcccacgctccatctgtgattcctctccaggaagaa
ggaaaggaaccaggcaccctgaaaaagagacagtgttgggtccaactgtc
ggcctagcacagggccaccctgcttcttcctctcttgacttctctgagaa
ttaaaacatttaattttagagtttatttcacctcaaagtacagtgtggca
gacattaaagaatgccctgctgggagagaatacccaggagacgacctgag
ccacacagtcaaggtcagcattagcatggccagtctgtgatggagggacc
acagacactatactccacatcaccaaggccagcgagcaagaaggaaagtg
ggaagtcagataacaggctgcccagaggagctaggaggactgtgtaagac
actgaaaactctgcatagcgcatggtccactcctgggaaagctgcagtgc
tggctcaccatagacagatccacctgcactatcaggtaaaagagggagga
acaggaagagggaggaagaggacagagacaaggaggaagaggacaaagag
gaggaagaagacagaaagtaaaagaagtagacagagagaggaagaggaag
acaaaaagggagggtagggggcagggaggaggaagacgaagaaagaggaa
caaaggaaaaaagaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56337008_56337882
seq2: B6Ng01-322G19.b_45_918

seq1  GAATTCAGTGCACCCCGGCAGGGTACACAGAGTCGGTGACATTCTTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCACCCCGGCAGGGTACACAGAGTCGGTGACATTCTTGTGA  50

seq1  CACTGAGCCACTGCCAGGAGAGACATGGAGACAGAGCCCTGGTCAGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCACTGCCAGGAGAGACATGGAGACAGAGCCCTGGTCAGCACC  100

seq1  TTGGGTCACTTGGTGCCAAGCAGCCAGGACATGAGGCCTGGTACCAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCACTTGGTGCCAAGCAGCCAGGACATGAGGCCTGGTACCAGGCC  150

seq1  CTCAGAGATGGCATCCCAGTCACTGTGTCCCTTGAGCCCATGGCTGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGATGGCATCCCAGTCACTGTGTCCCTTGAGCCCATGGCTGCCAC  200

seq1  AGCCTGCTGTGGTACCATGTGGCACTTCTTAACTATGCTGCTTACAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGTGGTACCATGTGGCACTTCTTAACTATGCTGCTTACAGAAG  250

seq1  ATGACCCGTCTTCAAGGAAGGCTTGAGCATTGTCTGGGGACATGTGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCGTCTTCAAGGAAGGCTTGAGCATTGTCTGGGGACATGTGTAGC  300

seq1  TGTCACAACTGGGGGAGCTGCTAGCAGGCAGCAAGCAGAACAGGAATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAACTGGGGGAGCTGCTAGCAGGCAGCAAGCAGAACAGGAATGCT  350

seq1  GCTCTCTGAATGTACCTCTGGAGACTGGGTCTGTGCAAAGGCCCTGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTGAATGTACCTCTGGAGACTGGGTCTGTGCAAAGGCCCTGGGGT  400

seq1  AGAGGACACAGCTCCACTGCACAGCCTAGAAGTGCCCCCAGCCCCTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACACAGCTCCACTGCACAGCCTAGAAGTGCCCCCAGCCCCTGGAG  450

seq1  GTCACTTGCCATCATGCATGACTTTCTCTACATCCCCCAGGGCCAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGCCATCATGCATGACTTTCTCTACATCCCCCAGGGCCAGAGAC  500

seq1  ACCATCTTTAATTCCCCTTGCATTATTACTTGACGCTCCAGACTCAGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTAATTCCCCTTGCATTATTACTTGACGCTCCAGACTCAGCCG  550

seq1  TGGGAGAGTGGAGTCACAGGTGAGCACCACCACATAGCTACCATTTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGTGGAGTCACAGGTGAGCACCACCACATAGCTACCATTTTCCT  600

seq1  TCTCAGACATTAGCATCTTGACTCCTAGAGCCAACTGCTTGGGCCAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGACATTAGCATCTTGACTCCTAGAGCCAACTGCTTGGGCCAAAGA  650

seq1  CCAGAGTATCTGAAGGTCTGAAGCCATATGGCTGAGGCTTGGGACACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTATCTGAAGGTCTGAAGCCATATGGCTGAGGCTTGGGACACAGA  700

seq1  CATGGCCAACAGGCAAATAGAAGTGAGCAGGTATGGCCATACACCAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCAACAGGCAAATAGAAGTGAGCAGGTATGGCCATACACCAAGAA  750

seq1  AAGAACAAGATGAAACTAAATGCAGGTGACACCCCTCAGTACACAGGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAGATGAAACTAAATGCAGGTGACACCCCTCAGTACACAGGGGC  800

seq1  CAAACTCTAATGCCCTGGTGGCAGCTCCTAGGTCTCAAACCTGGGTGTGT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAACTCTAATGCCCTGGTGGCAGCTCCTA-GTCTCAAACCTGGGTGTGT  849

seq1  GTGTGTGTGTGTGTGTGAGGGGGCT  875
      |||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGAGGGGGCT  874

seq1: chr17_56500530_56501536
seq2: B6Ng01-322G19.g_65_1083 (reverse)

seq1  ------------TCCTTTCTTCCTCTCTCCTCTGTCTTCCT-CTCCCTGC  37
                  |||||| ||||||| || || |||||||| ||||||||
seq2  TCCTTTCTTTTTTCCTTTGTTCCTCTTTCTTC-GTCTTCCTCCTCCCTGC  49

seq1  CCCCTCCCCTCCCTTTTTGTCTTCCTCTTCCTCTCTCTGTCTACTTCTTT  87
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCCTCCCTTTTTGTCTTCCTCTTCCTCTCTCTGTCTACTTCTTT  99

seq1  TACTTTCTGTCTTCTTCCTCCTCTTTGTCCTCTTCCTCCTTGTCTCTGTC  137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTGTCTTCTTCCTCCTCTTTGTCCTCTTCCTCCTTGTCTCTGTC  149

seq1  CTCTTCCTCCCTCTTCCTGTTCCTCCCTCTTTTACCTGATAGTGCAGGTG  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCCCTCTTCCTGTTCCTCCCTCTTTTACCTGATAGTGCAGGTG  199

seq1  GATCTGTCTATGGTGAGCCAGCACTGCAGCTTTCCCAGGAGTGGACCATG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCTATGGTGAGCCAGCACTGCAGCTTTCCCAGGAGTGGACCATG  249

seq1  CGCTATGCAGAGTTTTCAGTGTCTTACACAGTCCTCCTAGCTCCTCTGGG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTATGCAGAGTTTTCAGTGTCTTACACAGTCCTCCTAGCTCCTCTGGG  299

seq1  CAGCCTGTTATCTGACTTCCCACTTTCCTTCTTGCTCGCTGGCCTTGGTG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTTATCTGACTTCCCACTTTCCTTCTTGCTCGCTGGCCTTGGTG  349

seq1  ATGTGGAGTATAGTGTCTGTGGTCCCTCCATCACAGACTGGCCATGCTAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGTATAGTGTCTGTGGTCCCTCCATCACAGACTGGCCATGCTAA  399

seq1  TGCTGACCTTGACTGTGTGGCTCAGGTCGTCTCCTGGGTATTCTCTCCCA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCTTGACTGTGTGGCTCAGGTCGTCTCCTGGGTATTCTCTCCCA  449

seq1  GCAGGGCATTCTTTAATGTCTGCCACACTGTACTTTGAGGTGAAATAAAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCATTCTTTAATGTCTGCCACACTGTACTTTGAGGTGAAATAAAC  499

seq1  TCTAAAATTAAATGTTTTAATTCTCAGAGAAGTCAAGAGAGGAAGAAGCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTAAATGTTTTAATTCTCAGAGAAGTCAAGAGAGGAAGAAGCA  549

seq1  GGGTGGCCCTGTGCTAGGCCGACAGTTGGACCCAACACTGTCTCTTTTTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCCCTGTGCTAGGCCGACAGTTGGACCCAACACTGTCTCTTTTTC  599

seq1  AGGGTGCCTGGTTCCTTTCCTTCTTCCTGGAGAGGAATCACAGATGGAGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCCTGGTTCCTTTCCTTCTTCCTGGAGAGGAATCACAGATGGAGC  649

seq1  GTGGGCTCTGTGGTATCTGTGTGCCTGGGGCTCTGTGGCTCAGAAGTGGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTCTGTGGTATCTGTGTGCCTGGGGCTCTGTGGCTCAGAAGTGGA  699

seq1  GTGTATGAACCCTTTGGGCTCTCTAGGCAGCCTACAGTAGCCCCTTGCCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGAACCCTTTGGGCTCTCTAGGCAGCCTACAGTAGCCCCTTGCCT  749

seq1  TCAGGCTGTGTGGGAACACCCTTGCTTTCTGCAGCCCTGACCTTGGAGGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGTGTGGGAACACCCTTGCTTTCTGCAGCCCTGACCTTGGAGGG  799

seq1  GCCATCTCCTGATGAGGCCAGACTCACCCCAATGAGTTTTTAATAATGAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCCTGATGAGGCCAGACTCACCCCAATGAGTTTTTAATAATGAC  849

seq1  TTATTTTTATTTTATGTGCATTGGTGTTTTGCCTGCATATGTGTCTGTCC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTTTATGTGCATTGGTGTTTTGCCTGCATATGTGTCTGTCC  899

seq1  AATCCCTGGAACTGGAGTGAGCTGTCATATGGGTGCTGGGAATTGAATCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGGAACTGGAGTGAGCTGTCATATGGGTGCTGGGAATTGAATCT  949

seq1  AGGTACTTTGGAAGATTAGCCAGTGCTCTTAACTACTGGGCCATCTCTTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTTGGAAGATTAGCCAGTGCTCTTAACTACTGGGCCATCTCTTT  999

seq1  ATCCCTGAGCCACTGAATTC  1007
      ||||||||||||||||||||
seq2  ATCCCTGAGCCACTGAATTC  1019