BAC Information

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BAC

Clone NameB6Ng01-324A23
Chromosome17 (Build37)
Map Location 51,618,396 - 51,745,151
singlet/doubletdoublet
Overlap geneLOC100043451, LOC100043452
Upstream genePlcl2, EG654432, Tbc1d5
Downstream geneSatb1, EG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324A23.bB6Ng01-324A23.g
ACCGA112473GA112474
length8681,069
definitionB6Ng01-324A23.b B6Ng01-324A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,744,609 - 51,745,151)(51,618,396 - 51,619,473)
sequence
gaattcccttcttagtttgcattttctttattgcttctatttttgttttc
atgtcttgaatacttttatttgtgtctttcaactttttgttcttggtttt
ctttaaggaatttattcatttcctccaatagtttgtgttttcctggattt
ctttaagggatttagtcatctcctctttaagaacctgtaccatcttcata
tagttggttttaaggtctctttcttgtccttcagccatgttggaatgttc
agtccctgcttcaacaagaatagctgggctccagtggacacacactgtcc
tgaatgttattgaatctgttcttatgctagtgcctaggcatctgggttca
gcgtggttacagttcttgatgctgtctttgttgagtgggcatttttctgt
tccttgttttccttttctttctgactcttcagagagtgtgatggctgtat
gttgcctgttttaccgacctgtttggctagtgtgttcacagagaatgcct
gccggtgttggagactgggatgcagtatagaattggagaaggaggtcagg
aggtggtgggatccacaggagaggtgggcagtgatgaagaggagctgctg
ctgaggttctgttgcatcactaggaaggaactgagtcttggggaaaagag
agagcagaaaaggtctatggttagccttcttggctttttattttgcccaa
tctttaattctaaagatatgattatgcttacaggttaaagtaatcatggt
gttcttatcttagaatgctggtctgcaatacagttctgattcagctcaag
cttcctgaaaaaaatgtacactgcccactaataacctcaccccttgtctt
tgaatgtagtgtgtgtgt

gaattcctgttgtaagatagtgtgatttttatgtcagtgagacttagggg
tacgtgttattacactttagccagttctactttaattaattttaggattt
ttttctaagtggattaggtgacttttcaggtttggaaaagacatttcagg
gaaacagcatgtgagaatgtaaggcagtatttccaaacgaagaagaagag
gaggaggaggaagaaaaggagcagggaaaaggcttctctttttgtctact
aagcctggtcatcctaggctaaaacctgctcttagagcttccagaacatt
ccatgtgcagaaaaacaaaaacaaaaacaaaaacaaaaacaaaaacaaaa
acaaaaacacccatgtacctctagttgaagaaaggctcccagggccgtgt
ggatacttttttgtaggaagtggagaatgcagggaaatgtcggtgccagc
gaggcacgtgtggaccactggagccctggactggagacagtaaggctgga
gaagccgcttctctgtggctgagcagttgttgacatggggtcccttctga
tgatggttagaatgtgctgcttgcctcctttttttttttttttttttttt
ttttttttttttttttttttggcctctaacttgtgacctgtcaccgggac
tgggcaatagaaagtctcatctgacagcgccttatactcatcctagactc
cagagtccagaaactggggcttgtctttcacaagggaacacctagactgg
tcactggcttccttgactcaaggctgcaggcctggtggctccatttcttt
cattggtctgtggttaatgctcacctttttggcccttttatcttcctttc
tctcacaagtccagtggcctagccctgtttctttttcttttaaagaaatg
tatgggactacatagagtggtcacatttccagttagagtggactgttctg
gtaattttgtgtccgtgccactccaatctatcctctacagtgtgtgaaca
tgggcaggtcactcacgcttttaggcttcagtcatctaagcatggcatat
gacatctgctactggccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51744609_51745151
seq2: B6Ng01-324A23.b_367_909 (reverse)

seq1  ACACACACACTACATTCAAAGACAAGGGGTGAGGTTATTAGTGGGCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACTACATTCAAAGACAAGGGGTGAGGTTATTAGTGGGCAGTG  50

seq1  TACATTTTTTTCAGGAAGCTTGAGCTGAATCAGAACTGTATTGCAGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTTTCAGGAAGCTTGAGCTGAATCAGAACTGTATTGCAGACCA  100

seq1  GCATTCTAAGATAAGAACACCATGATTACTTTAACCTGTAAGCATAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTAAGATAAGAACACCATGATTACTTTAACCTGTAAGCATAATCA  150

seq1  TATCTTTAGAATTAAAGATTGGGCAAAATAAAAAGCCAAGAAGGCTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAGAATTAAAGATTGGGCAAAATAAAAAGCCAAGAAGGCTAACC  200

seq1  ATAGACCTTTTCTGCTCTCTCTTTTCCCCAAGACTCAGTTCCTTCCTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCTTTTCTGCTCTCTCTTTTCCCCAAGACTCAGTTCCTTCCTAGT  250

seq1  GATGCAACAGAACCTCAGCAGCAGCTCCTCTTCATCACTGCCCACCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAACAGAACCTCAGCAGCAGCTCCTCTTCATCACTGCCCACCTCTC  300

seq1  CTGTGGATCCCACCACCTCCTGACCTCCTTCTCCAATTCTATACTGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATCCCACCACCTCCTGACCTCCTTCTCCAATTCTATACTGCATC  350

seq1  CCAGTCTCCAACACCGGCAGGCATTCTCTGTGAACACACTAGCCAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCCAACACCGGCAGGCATTCTCTGTGAACACACTAGCCAAACAG  400

seq1  GTCGGTAAAACAGGCAACATACAGCCATCACACTCTCTGAAGAGTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTAAAACAGGCAACATACAGCCATCACACTCTCTGAAGAGTCAGAA  450

seq1  AGAAAAGGAAAACAAGGAACAGAAAAATGCCCACTCAACAAAGACAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAAAACAAGGAACAGAAAAATGCCCACTCAACAAAGACAGCAT  500

seq1  CAAGAACTGTAACCACGCTGAACCCAGATGCCTAGGCACTAGC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTGTAACCACGCTGAACCCAGATGCCTAGGCACTAGC  543


seq1: chr17_51618396_51619473
seq2: B6Ng01-324A23.g_66_1134

seq1  GAATTCCTGTTGTAAGATAGTGTGATTTTTATGTCAGTGAGACTTAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTGTAAGATAGTGTGATTTTTATGTCAGTGAGACTTAGGGG  50

seq1  TACGTGTTATTACACTTTAGCCAGTTCTACTTTAATTAATTTTAGGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGTTATTACACTTTAGCCAGTTCTACTTTAATTAATTTTAGGATTT  100

seq1  TTTTCTAAGTGGATTAGGTGACTTTTCAGGTTTGGAAAAGACATTTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGTGGATTAGGTGACTTTTCAGGTTTGGAAAAGACATTTCAGG  150

seq1  GAAACAGCATGTGAGAATGTAAGGCAGTATTTCCAAACGAAGAAGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCATGTGAGAATGTAAGGCAGTATTTCCAAACGAAGAAGAAGAG  200

seq1  GAGGAGGAGGAAGAAAAGGAGCAGGGAAAAGGCTTCTCTTTTTGTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGGAAGAAAAGGAGCAGGGAAAAGGCTTCTCTTTTTGTCTACT  250

seq1  AAGCCTGGTCATCCTAGGCTAAAACCTGCTCTTAGAGCTTCCAGAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGTCATCCTAGGCTAAAACCTGCTCTTAGAGCTTCCAGAACATT  300

seq1  CCATGTGCAGAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCAGAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAA  350

seq1  ACAAAAACACCCATGTACCTCTAGTTGAAGAAAGGCTCCCAGGGCCGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACACCCATGTACCTCTAGTTGAAGAAAGGCTCCCAGGGCCGTGT  400

seq1  GGATACTTTTTTGTAGGAAGTGGAGAATGCAGGGAAATGTCGGTGCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTTTTTGTAGGAAGTGGAGAATGCAGGGAAATGTCGGTGCCAGC  450

seq1  GAGGCACGTGTGGACCACTGGAGCCCTGGACTGGAGACAGTAAGGCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACGTGTGGACCACTGGAGCCCTGGACTGGAGACAGTAAGGCTGGA  500

seq1  GAAGCCGCTTCTCTGTGGCTGAGCAGTTGTTGACATGGGGTCCCTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGCTTCTCTGTGGCTGAGCAGTTGTTGACATGGGGTCCCTTCTGA  550

seq1  TGATGGTTAGAATGTGCTGCTTGCCTCCTTTTTTTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTTAGAATGTGCTGCTTGCCTCCTTTTTTTTTTTTTTTTTTTTTT  600

seq1  TTTTTTTTTTTTTTTTTTTTTGCCTCTACCTTGTGACCTGTCACCGGGAC  650
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTGGCCTCTAACTTGTGACCTGTCACCGGGAC  650

seq1  TGGGCAATAGAAAGTCTCATCTGACAGCGCCTTATACTCATCCTAGACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATAGAAAGTCTCATCTGACAGCGCCTTATACTCATCCTAGACTC  700

seq1  CAGAGTCCAGAAACTGGGTCTTGTCTTTCACAAGGCAACACCTAGACT-G  749
      |||||||||||||||||| |||||||||||||||| |||||||||||| |
seq2  CAGAGTCCAGAAACTGGGGCTTGTCTTTCACAAGGGAACACCTAGACTGG  750

seq1  TCACTGGCTTCC-TGACTC-AGGCTGCA-GCCTGGTGGCTCCATTTCTTT  796
      |||||||||||| |||||| |||||||| |||||||||||||||||||||
seq2  TCACTGGCTTCCTTGACTCAAGGCTGCAGGCCTGGTGGCTCCATTTCTTT  800

seq1  CATT-GTCTGT-GTTAATGCTCA-CTTTTTG--CCTTTTATCTT-CTTTC  840
      |||| |||||| ||||||||||| |||||||  ||||||||||| |||||
seq2  CATTGGTCTGTGGTTAATGCTCACCTTTTTGGCCCTTTTATCTTCCTTTC  850

seq1  TCTCAC-AGTCCAGTGGCCTAG-CCTGTT--CTTTTCTTTAAAGAAAATG  886
      |||||| ||||||||||||||| ||||||   |||||||| ||  |||||
seq2  TCTCACAAGTCCAGTGGCCTAGCCCTGTTTCTTTTTCTTTTAAAGAAATG  900

seq1  TAT-GGACTACATAGAGTGGTCACATTTTCCAGTTAAGAGTTGACTGTTT  935
      ||| ||||||||||||||||||||| ||||||||| ||||| ||||| ||
seq2  TATGGGACTACATAGAGTGGTCACA-TTTCCAGTT-AGAGTGGACTG-TT  947

seq1  CTGGTTAAATTTTTGTGTCCGTGCCCACTTCCAATTCTATCCTCTTAACA  985
      |||||   | ||||||||||||| |||| ||||| ||||||||||  |||
seq2  CTGGT---AATTTTGTGTCCGTG-CCAC-TCCAA-TCTATCCTCT--ACA  989

seq1  GTTGTGTGACATTGGGCAGGTCACTCACGCTTTTTAAGCTTCAGTTTCCC  1035
      | |||||||   |||||||||||||||||| ||||| ||||||||    |
seq2  G-TGTGTGAACATGGGCAGGTCACTCACGC-TTTTAGGCTTCAGT----C  1033

seq1  ATTCTAAGCATGGCATAATGACCCATCCTTGCTACTGAGCCAC  1078
      | |||||||||||||| ||||  ||||  |||||||| |||||
seq2  A-TCTAAGCATGGCAT-ATGA--CATC--TGCTACTG-GCCAC  1069


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