BAC Information

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BAC

Clone NameB6Ng01-325D14
Chromosome17 (Build37)
Map Location 56,074,557 - 56,076,067
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125
Downstream geneBC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325D14.bB6Ng01-325D14.g
ACCGA113337GA113338
length1,1251,225
definitionB6Ng01-325D14.b B6Ng01-325D14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattcccagctcacaaccatctgtaataggatctgatgctttct
tctggtgtgtctgaagacatctacagagtacttgcatacataaaataaat
aaatcttttttttaaaaagggttttcttcatgtctatgttactttttaaa
ataaaatgaattcatatgcattcctgggacatgatctaggaatcaagtca
tatgtgaattctgagtctttgtgagaatactccaagaaaaccctaactaa
ggttagggttttactgctgtgaacaaacaccatgaccaaggtaagtctta
taaaggacaacatttaattgggcctgacttacaggttcagaggttcagtc
cattacatcaaggtgggagcatggcagcatctagacaggcatggtgtggg
cagagctgagttctacatcttcatctgaaggctgctagtggaggactgat
gtccagcagctaggatgagggtcttaagcccatgcttacagtgacacacc
tactccaacaaggccacacctcctaatagtgctactcactggtccgagta
tatacaaaacagtcacatgacctaagtgccttcaaaacacagaattattc
ttggaatgtatttgtatgctcctctcaggtgttgcaaataggagtgagtt
tatttcagattactcactgtttaatgttgttatttaattgtttaaactat
cttttatatgtctgtttggttttgtaattgtatattccttcactcattag
aactatacttgtcttcatggctctacaactccatagccctgccctcttcc
ttttatttaggggtagtctctgcagacatgttgggagctcttcatccatc
ttccataggtagagccagcctttcagtatctacagaggctttttagtgcc
ctgaggggggaaaaatacacatatagccttggctccagtgactttctggc
cctgggcatttcattgacctgacataacatctctcagaaggactgtgact
gtaaatttcagacggggccccaaagtgtcagcagcagttctttctgtcaa
attaaaaattataaagtctaatttactagaagaataagataggtgcttgt
tgagagcatactacctcttctcctc
gaattctttgttttgctctgtacccagttttaaatagggttatttggttt
tctggagtccagcttcttgagttctttgtatatattggatattagtcccc
tattggatttaggatgggtaaagattctttcctaatctgttggtggcctt
tttgttttattgacagtgtcttttgcctttttatgaggctttgcaatttt
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttcttctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagacttgagctttgtacaaggagataataatggatcaattcac
attcttctatatgataaccgccagttcagtcagcacagtttgttgaaaat
gctgtcttttttccactggatggttttaactcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattga
tctacttgtctgtcgctataccagtaccatgcagattttatcacgattgt
tctgcagtacagtttgaggtcaggcatggtgattccaccagaggttcctt
tattgttgagaatagtttttgctatcctaagttttttgttattccagatg
aatttgcaaattaccctttctaatttgttgaagaattgagttggaatttt
gatggggattgcattgaatctgaagattgcttttgggaaggtggtcattt
ttactatatttatcctaccaatccatgagcaagagagatctttccacctt
ctgagatcttcttcgatttctttcttcagagacttgaagttcttattata
cagatctttcacttgcttagagtcacaccaaaatactttatattatttgt
gactatgtgaagtgtgttgtttccctaattactttctcagctggtttatc
ctttgagtagaggaagacactgattagtttgagttaattttgtatctaga
tgtgatactcacagcggtcattgactgagcacaaggttccctatggagga
gctataaagggaccaaggagctgaggaatgcgaccctatgggagaacaca
tttgacacagtgctaagatccgggacatatacccactcaactacatacat
ggggaggaactagcatgctgctacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56074557_56076067
seq2: B6Ng01-325D14.b_44_1168 (reverse)

seq1  GAGGAGAAGAGGAGGGGAGAGGGAGGAGAGTCTGTGAGAGAGGTCAGAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGGCAGTGTTTGGGATGTGAATATAAACAAATAAATAAATAAAATGTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTAACTTTATCCAGAAATTACTCCTAAATCAAAAACATAAGGAGATAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAGATAGATAGATAGATAGATAGATAGATAGATAGATTATAGATATAGAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GATATACACACACATATATACATATATATCACTCATACTTGGTGTGATGA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGTTGTAAAATTAGACTGTGGGTGTGCCTACAACTTTGTGAATTTAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TAAAACCATGAAAACATGCTTAATTCTGTGCAAGAGTAAATTCTATACTA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TGATAAAAAGAAAAAGTAAAAGAAAGGAAGGGGAGAAGA-GTAGTATGCT  399
                                   | |||||||| ||||||||||
seq2  -----------------------------GAGGAGAAGAGGTAGTATGCT  21

seq1  TCCTCA--CAGCACTTTATCCTTATCCTCTAGTATA-TAGACTTTAATAT  446
        ||||   |||||  |||| |  || ||||||| | |||||||||  ||
seq2  --CTCAACAAGCAC-CTATCTTATTCTTCTAGTAAATTAGACTTTATAAT  68

seq1  TTTTAATTTTGACAAGAAAGAACTTGCTGCTGAACACTTTGGGGCCCCCG  496
      |||||| |||||| ||||||||| |||||||| ||||||||||| |||||
seq2  TTTTAA-TTTGAC-AGAAAGAAC-TGCTGCTG-ACACTTTGGGG-CCCCG  113

seq1  TCTGAAATTTTACAGTCACAGTCCTTCTGAGAGATGTTATGTCAGGTCAA  546
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAA-TTTACAGTCACAGTCCTTCTGAGAGATGTTATGTCAGGTCAA  162

seq1  TGAAATGCCCAGGGCCAGAAAGTCACTGGAGCCAAGGCTATATGTGTATT  596
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGAAATGCCCAGGGCCAGAAAGTCACTGGAGCCAAGGCTATATGTGTA-T  211

seq1  TTTTCCCCCCTCAGGGCACTAAAAAGCCTCTGTAGATACCTGAAAGGCTG  646
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTCCCCCCTCAGGGCACTAAAAAGCCTCTGTAGATA-CTGAAAGGCTG  260

seq1  GCTCTACCTATGGAAGATGGATGAAGAGCTCCCAACATGTCTGCAGAGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACCTATGGAAGATGGATGAAGAGCTCCCAACATGTCTGCAGAGAC  310

seq1  TACCCCTAAATAAAAGGAAGAGGGCAGGGCTATGGAGTTGTAGAGCCATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTAAATAAAAGGAAGAGGGCAGGGCTATGGAGTTGTAGAGCCATG  360

seq1  AAGACAAGTATAGTTCTAATGAGTGAAGGAATATACAATTACAAAACCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGTATAGTTCTAATGAGTGAAGGAATATACAATTACAAAACCAA  410

seq1  ACAGACATATAAAAGATAGTTTAAACAATTAAATAACAACATTAAACAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATATAAAAGATAGTTTAAACAATTAAATAACAACATTAAACAGT  460

seq1  GAGTAATCTGAAATAAACTCACTCCTATTTGCAACACCTGAGAGGAGCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATCTGAAATAAACTCACTCCTATTTGCAACACCTGAGAGGAGCAT  510

seq1  ACAAATACATTCCAAGAATAATTCTGTGTTTTGAAGGCACTTAGGTCATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACATTCCAAGAATAATTCTGTGTTTTGAAGGCACTTAGGTCATG  560

seq1  TGACTGTTTTGTATATACTCGGACCAGTGAGTAGCACTATTAGGAGGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTTGTATATACTCGGACCAGTGAGTAGCACTATTAGGAGGTGT  610

seq1  GGCCTTGTTGGAGTAGGTGTGTCACTGTAAGCATGGGCTTAAGACCCTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTTGGAGTAGGTGTGTCACTGTAAGCATGGGCTTAAGACCCTCA  660

seq1  TCCTAGCTGCTGGACATCAGTCCTCCACTAGCAGCCTTCAGATGAAGATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTGCTGGACATCAGTCCTCCACTAGCAGCCTTCAGATGAAGATG  710

seq1  TAGAACTCAGCTCTGCCCACACCATGCCTGTCTAGATGCTGCCATGCTCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCAGCTCTGCCCACACCATGCCTGTCTAGATGCTGCCATGCTCC  760

seq1  CACCTTGATGTAATGGACTGAACCTCTGAACCTGTAAGTCAGGCCCAATT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGATGTAATGGACTGAACCTCTGAACCTGTAAGTCAGGCCCAATT  810

seq1  AAATGTTGTCCTTTATAAGACTTACCTTGGTCATGGTGTTTGTTCACAGC  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTCCTTTATAAGACTTACCTTGGTCATGGTGTTTGTTCACAGC  860

seq1  AGTAAAACCCTAACCTTAGTTAGGGTTTTCTTGGAGTATTCTCACAAAGA  1296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACCCTAACCTTAGTTAGGGTTTTCTTGGAGTATTCTCACAAAGA  910

seq1  CTCAGAATTCACATATGACTTGATTCCTAGATCATGTCCCAGGAATGCAT  1346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATTCACATATGACTTGATTCCTAGATCATGTCCCAGGAATGCAT  960

seq1  ATGAATTCATTTTATTTTAAAAAGTAACATAGACATGAAGAAAACCCTTT  1396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCATTTTATTTTAAAAAGTAACATAGACATGAAGAAAACCCTTT  1010

seq1  TTAAAAAAAAGATTTATTTATTTTATGTATGCAAGTACTCTGTAGATGTC  1446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAGATTTATTTATTTTATGTATGCAAGTACTCTGTAGATGTC  1060

seq1  TTCAGACACACCAGAAGAAAGCATCAGATCCTATTACAGATGGTTGTGAG  1496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACACCAGAAGAAAGCATCAGATCCTATTACAGATGGTTGTGAG  1110

seq1  CTGGGAATTGAATTC  1511
      |||||||||||||||
seq2  CTGGGAATTGAATTC  1125