BAC Information

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BAC

Clone NameB6Ng01-325N11
Chromosome17 (Build37)
Map Location 55,309,271 - 55,310,385
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833
Downstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325N11.bB6Ng01-325N11.g
ACCGA113796GA113797
length9921,111
definitionB6Ng01-325N11.b B6Ng01-325N11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgctt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ttatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggattgattcat
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccatagtgtgtgggttaatttctgggtcttcaattctgttccattgct
ctacctgtctgtctctataccagtaccatgcggtttttatcacaattggt
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagtttttatcatac
agatctttcacctctttagttagagtcacgccaagatattttatattatt
gtgactatgagaaggtgtgtttccctaatttcctttctcagc
gaattctttgtttagctctgtaccccatttttaatggggtcatttgaatt
tctggagtccagcttcttgagctctttctatatattggatattagtcctc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggccct
tttgtctaattgacagtgtcttttgccttatagaagctttgcaattttat
gaggtcccatttgtcaattctttttgtttgtttgttttacttgtaatcat
tcattcatttattcaacactgaagtaagactacatatttctgatgttgta
agacactgggagcatcatgtttagaacaatggaggtggacatgccttaat
gcaggagccttggaaaaggagacagataattgaggtatgcatatgccaac
aagataatggctgattatggtgttgtaaagcagatggctttgattgactg
tccagaaagacagtctccagggaaaataatactgtagaggccaaaagcag
agaaagggccaggcacatagaaaagagtgctaaagagagcaagcacaaat
actcaaacatacaactcaattttggaatattccagaaactagctgacatc
tacagtggttgatcccagagtggaggcaggaggagaagcataaggaacca
gggtgtggctcttgacttgtatgcccaaccatgttctggtgcttctgtgt
caaggtttattttactttactatgtgtgcacgtgtgtgtctgtgtgaatg
tatatcatatgtatgtgcctggagaggacagcttatagcacaagccattg
ctgttctgtttagaaatttttccccagtgcccatatcttcgaggcttttc
cccactttctcctctataaatttcagtgtctctggttttatctggaattc
tttgatccacttagacttgagctttgtacaagaaacctagattttaaagg
atacatgtaaaaaaatgcaaaatgtctctgctaaacagaatagagcttag
caactgatctaacccagcagtgtggggtaggtagacaggtaggcgtgtgt
catctctttctctatgaagaaaacctgattaatcactggtgcacaggaaa
tgtctcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55309271_55310385
seq2: B6Ng01-325N11.g_67_1177

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTCATTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTCATTTGAATT  50

seq1  TCTGGAGTCCAGCTTCTTGAGCTCTTTCTATATATTGGATATTAGTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCAGCTTCTTGAGCTCTTTCTATATATTGGATATTAGTCCTC  100

seq1  TATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCCT  150

seq1  TTTGTCTAATTGACAGTGTCTTTTGCCTTATAGAAGCTTTGCAATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAATTGACAGTGTCTTTTGCCTTATAGAAGCTTTGCAATTTTAT  200

seq1  GAGGTCCCATTTGTCAATTCTTTTTGTTTGTTTGTTTTACTTGTAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCAATTCTTTTTGTTTGTTTGTTTTACTTGTAATCAT  250

seq1  TCATTCATTTATTCAACACTGAAGTAAGACTACATATTTCTGATGTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTTATTCAACACTGAAGTAAGACTACATATTTCTGATGTTGTA  300

seq1  AGACACTGGGAGCATCATGTTTAGAACAATGGAGGTGGACATGCCTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGGGAGCATCATGTTTAGAACAATGGAGGTGGACATGCCTTAAT  350

seq1  GCAGGAGCCTTGGAAAAGGAGACAGATAATTGAGGTATGCATATGCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCCTTGGAAAAGGAGACAGATAATTGAGGTATGCATATGCCAAC  400

seq1  AAGATAATGGCTGATTATGGTGTTGTAAAGCAGATGGCTTTGATTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATGGCTGATTATGGTGTTGTAAAGCAGATGGCTTTGATTGACTG  450

seq1  TCCAGAAAGACAGTCTCCAGGGAAAATAATACTGTAGAGGCCAAAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAGACAGTCTCCAGGGAAAATAATACTGTAGAGGCCAAAAGCAG  500

seq1  AGAAAGGGCCAGGCACATAGAAAAGAGTGCTAAAGAGAGCAAGCACAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGCCAGGCACATAGAAAAGAGTGCTAAAGAGAGCAAGCACAAAT  550

seq1  ACTCAAACATACAACTCAATTTTGGAATATTCCAGAAACTAGCTGACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACATACAACTCAATTTTGGAATATTCCAGAAACTAGCTGACATC  600

seq1  TACAGTGGTTGATCCCAGAGTGGAGGCAGGAGGAGAAGCATAAGGAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGTTGATCCCAGAGTGGAGGCAGGAGGAGAAGCATAAGGAACCA  650

seq1  GGGTGTGGCTCTTGACTTGTATGCCCAACCATGTTCTGGTGCTTCTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGCTCTTGACTTGTATGCCCAACCATGTTCTGGTGCTTCTGTGT  700

seq1  CAAGGTTTATTTTACTTTACTATGTGTGCACGTGTGTGTCTGTGTGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTATTTTACTTTACTATGTGTGCACGTGTGTGTCTGTGTGAATG  750

seq1  TATATCATATGTATGTGCCTGGAGAGGACAGCTTATAGCACAAGCCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATATGTATGTGCCTGGAGAGGACAGCTTATAGCACAAGCCATTG  800

seq1  CTGTTCTGTTTAGAAATTTTTCCCCAGTGCCCATATCTTCGAGGCTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGTTTAGAAATTTTTCCCCAGTGCCCATATCTTCGAGGCTTTTC  850

seq1  CCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATCTGGAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATCTGGAATTC  900

seq1  TTTGATCCACTTAGACTTGAGCTTTGTACAAGAAACCTAGATTTTAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCACTTAGACTTGAGCTTTGTACAAGAAACCTAGATTTTAAAGG  950

seq1  ATACATGTAAAAAAAATGCAAAATGTCTCTGCTAAACAAGAATAGAGCTT  1000
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  ATACATGT-AAAAAAATGCAAAATGTCTCTGCTAAAC-AGAATAGAGCTT  998

seq1  AGCAACTGATCTAACCCAAGGCAGTGT-GGGTAGGTAGACCAGGTAGGCG  1049
      ||||||||||||||||||  ||||||| ||||||||||| ||||||||||
seq2  AGCAACTGATCTAACCCA--GCAGTGTGGGGTAGGTAGA-CAGGTAGGCG  1045

seq1  TGTGTCATCTCTTTCTCTAATGAAGAAAACCTGGTTTATCACCTGTGCAC  1099
      |||||||||||||||||| |||||||||||||| || |||||  ||||||
seq2  TGTGTCATCTCTTTCTCT-ATGAAGAAAACCTGATTAATCACTGGTGCAC  1094

seq1  A-GAAATGTCTTCTCTC  1115
      | ||||||||| |||||
seq2  AGGAAATGTCTCCTCTC  1111