BAC Information

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BAC

Clone NameB6Ng01-325P23
Chromosome17 (Build37)
Map Location 21,956,281 - 21,957,200
singlet/doubletsinglet
Overlap gene2610036F08Rik
Upstream geneV1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik
Downstream geneLOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325P23.bB6Ng01-325P23.g
ACCGA113916GA113917
length1,0071,073
definitionB6Ng01-325P23.b B6Ng01-325P23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgacaaaaccaaattcgcacaatatctttccatgaatctagc
ccttcaaagcataataaagggaaaacaccaactcaaagatagaaagtaca
ccctagaaaaagcaagaaagtaatccttcaacaaacctaaaagaagacag
ccacaagaacagaatcccaactttaacaacaaaaataacatgaagcaaca
attactttaatttctcttaaaatcaatggacttgattccccaataagaat
acatagactaatagactagctacacaaacaggacccaacattttgctgct
tgcaggaaaccctcctcagggacaaaggcagacactccctaagagtaaaa
ggctggaaaacaattttccaagcaaatggtccaaagaaacaagctggagt
agccattctaatatggaataaaattgacttctgtcttagtcagggtttct
attcctgcacaaacatcatgaccaagaagcaggttggggaggaaagggtt
tattcaccttacacttccatactgctgttcatcaccaaggaagtcaggac
tagaactcaagcaggtcaggaagcaagagctgattcagaagccatggagg
gatgttctttactggcttgcttcccctggcttgctcagcctgctctctta
tagaacccaagactgccagcccagagatgttcccacccacaaggggcctt
tcccccttgatcactaattgagaaaataacccacaactagatctcatgga
ggcacttcgccaaccaaatctccttttctctctgataactccagcctgtg
tcaagttgatacataaaatcagccagtagaacttccaacccaaagttatc
aaaaaagacaagggagggcactttcatactcatcaaaggtaaatatacga
agataaactctcaattctaaatatctggactccaaatgcaagggcagtca
catttccttaaagaaactttagtaaagctcaaagcatacattgcatctca
cacaaaa
gaattctctgatgaatactaagatcacttttgagaataaagcatttgtca
cattcactacatttgtaacctttctttcctgtatgaattatctgatgaat
gataagacggcatttttgagtaaagcctttgtcacattcactacatttgt
aaggtttttctcccatatgaatgctctgatgtcttctaagatcacctttg
tgggtaaagcatttgccacattcactacatttgtaagctttctctcctgt
gtggataatctgatgacttctaaggccacttttgtaggtaaagcatttgt
cacattcactacatttgtaaggtttttctcctgtatgaattcgcagatga
atactaagattgccttgctgagaaaaagatttgtcacattcactgcattt
gtatgatttctctcctgtatgaactctctgatgaatattaagacggcttt
tgctggtaaagcctttgtcacattcactacatttgtaaggtttctctcct
gtatgaactctctgatgaataataagtctgtctttttgggtaaagcattt
gtcacattcactacatttgtaaggtttctctcctgtatgaattctctgat
gttgtctaagcttgcatttcttggtgaaacatttgtcacattcactacat
ttgtaaggtttttctctattattggtttgcttcagcttgagtttttgttt
agagtcaaaaaccttaacaagctctgtaccatagtattctttttttcttc
tgtggattccctgagttaaactaatggtagagaacaaatttaaacagtta
acagggcttttagatttgcaaggttctctgttgttttcagtttcatgtct
gcttaggtttgatgattcaacagatgtagccctgagttagttttataagt
gtactttggtggattcatgaatgattttgccaagctcatgacatttatag
attcacttggatatcacatgctcatggacatatgctgaagtcttgatcag
atgtcttatatttagacacatccaatggtctctgaaaaaaaatgtattta
gaattgacagcatagtggatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21956281_21957200
seq2: B6Ng01-325P23.g_236_1139

seq1  AATGCTCTGATGTCTTCTAAGATCACCTTTGTGGGTAAAGCATTTGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTGATGTCTTCTAAGATCACCTTTGTGGGTAAAGCATTTGCCAC  50

seq1  ATTCACTACATTTGTAAGCTTTCTCTCCTGTGTGGATAATCTGATGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTACATTTGTAAGCTTTCTCTCCTGTGTGGATAATCTGATGACTT  100

seq1  CTAAGGCCACTTTTGTAGGTAAAGCATTTGTCACATTCACTACATTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCACTTTTGTAGGTAAAGCATTTGTCACATTCACTACATTTGTA  150

seq1  AGGTTTTTCTCCTGTATGAATTCGCAGATGAATACTAAGATTGCCTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTCTCCTGTATGAATTCGCAGATGAATACTAAGATTGCCTTGCT  200

seq1  GAGAAAAAGATTTGTCACATTCACTGCATTTGTATGATTTCTCTCCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGATTTGTCACATTCACTGCATTTGTATGATTTCTCTCCTGTA  250

seq1  TGAACTCTCTGATGAATATTAAGACGGCTTTTGCTGGTAAAGCCTTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTCTGATGAATATTAAGACGGCTTTTGCTGGTAAAGCCTTTGTC  300

seq1  ACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAACTCTCTGATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAACTCTCTGATGAA  350

seq1  TAATAAGTCTGTCTTTTTGGGTAAAGCATTTGTCACATTCACTACATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTCTGTCTTTTTGGGTAAAGCATTTGTCACATTCACTACATTTG  400

seq1  TAAGGTTTCTCTCCTGTATGAATTCTCTGATGTTGTCTAAGCTTGCATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTTCTCTCCTGTATGAATTCTCTGATGTTGTCTAAGCTTGCATTT  450

seq1  CTTGGTGAAACATTTGTCACATTCACTACATTTGTAAGGTTTTTCTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGAAACATTTGTCACATTCACTACATTTGTAAGGTTTTTCTCTAT  500

seq1  TATTGGTTTGCTTCAGCTTGAGTTTTTGTTTAGAGTCAAAAACCTTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTTGCTTCAGCTTGAGTTTTTGTTTAGAGTCAAAAACCTTAACA  550

seq1  AGCTCTGTACCATAGTATTCTTTTTTTCTTCTGTGGATTCCCTGAGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTACCATAGTATTCTTTTTTTCTTCTGTGGATTCCCTGAGTTAA  600

seq1  ACTAATGGTAGAGAACAAATTTAAACAGTTAACAGGGCTTTTAGATTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGTAGAGAACAAATTTAAACAGTTAACAGGGCTTTTAGATTTGC  650

seq1  AAGGTTCTCTGTTGTTTTCAGTTTCATGTCTGCTTAGGTTTGATGATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTCTGTTGTTTTCAGTTTCATGTCTGCTTAGGTTTGATGATTCA  700

seq1  ACAGATGTAGCCCTGAGGTTAGTTTTATAAGGTGTACTTTGGGTGGATTC  750
      |||||||||||||||| ||||||||||||| ||||||||| |||||||||
seq2  ACAGATGTAGCCCTGA-GTTAGTTTTATAA-GTGTACTTT-GGTGGATTC  747

seq1  ATGAATGATTTTGCCAAGCTCATGACATTTATAAGATTTCACTTGGATAT  800
      |||||||||||||||||||||||||||||||| ||| |||||||||||| 
seq2  ATGAATGATTTTGCCAAGCTCATGACATTTAT-AGA-TTCACTTGGATA-  794

seq1  TCACATGCTCATGGACAATATGCTGAAGGTCTTGATCCAAGATGTTCTTA  850
      |||||||||||||||| |||||||||| |||||||||  ||||| |||||
seq2  TCACATGCTCATGGAC-ATATGCTGAA-GTCTTGATC--AGATG-TCTTA  839

seq1  TATTTAGGACACATCCCATGGGTCTCTGAAAAAAAAATGTATTTAGATAT  900
      |||||| ||||||||| || |||||||| ||||||||||||||||||  |
seq2  TATTTA-GACACATCCAAT-GGTCTCTG-AAAAAAAATGTATTTAGAATT  886

seq1  GACAGGGATTAGTGGATGAG  920
      ||||  |  |||||||||||
seq2  GACA--GCATAGTGGATGAG  904