BAC Information

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BAC

Clone NameB6Ng01-327P17
Chromosome17 (Build37)
Map Location 59,626,491 - 59,803,851
singlet/doubletdoublet
Overlap geneLOC100043542
Upstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327P17.bB6Ng01-327P17.g
ACCGA115365GA115366
length1,1071,115
definitionB6Ng01-327P17.b B6Ng01-327P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,626,491 - 59,627,600)(59,802,728 - 59,803,851)
sequence
gaattcttcagtagtaaacacaagtatttaactttgtctattttaaacta
agataaatgtagtctgcagatattaggcaatcaacaagattttttataag
actagaagactaagttcaaaatatatagaaaagggatattatacatgttc
aatcctgctgatttctaggccatgtctataatgatagaattgataagcag
attctgagtgtcagtatagtcataattcaatttctgagagtgtagttggc
tccgacaatctttgttgagtaatgatccactctactatatctatccatgt
agaatattctataatttatagaacaaacgtcaggtatattattgttatta
ttattatgattatcatcatcatcatcacctttattttccttgtggatgaa
cataccatctattttacaattgctgctcaaaaatgggttaaaaatatcca
ttttcctcaaacaccaaatgctattagatgcattagtgattacttgaaat
aaaagtatctgtgactttaacgtgcagtgtgtgatgaaaatactttcaga
aatgcttttatttatagaaataactttaaagaaatatgttttgagaagca
gctttgggttagcatcatgttttgttaaaaagatacctaaaatgaactca
tccaagatactaattgttcatctattttcctcgtattatttactcaaaaa
acaaaccaagttgcaaaccaaagtctcagactctaacgtattaaaattaa
aggacaaaaatctccatttgagttccctgatttaccaggtttctaggttg
tagcaatctggtgtaatcctcacatgtaagctagcagatgtatatgagtc
ttcgtgacactgactgttaattctcggtagagacatggcctgtggttgct
agtccaatagcagcgagtgggtaaattataagcctgctgttgttttggag
cattctacatgtgtcattacagataatctagtacaaaataaagatgtact
attcattacctgtatgatgcaaatattagtgctaatagagatgactgagg
aatcctttagcatgaagatgaatggctttggtgtttgctgagagacagca
agagaaa

gaattctctagagatcatcattgctttctgggaagatatgttaaaagagg
tcttgattgtgaattaaggtaagcaatgccctgctcactgtgtatagtat
cactgctagataagtatccttaaacttcccccccaaaaaaggtagctaag
caaatccatgtgaaatagagggagtacaagtgagtgagcaatgccttaac
tatactaagtgaacactgactatactgaagtgttattttggtcagttatt
ttatgcaagtttcgatttgcctgttcttgacaagcttcttctgaaagcag
cattcattcctgaaagtgaaaaatctaaaactataaagagaacaaaatcc
aagctcggggagaagatgagtaaaagtttcatggttcctggttaaaaata
tttcagaagggtatgctagtgataatatttattcttaacattgtgaaaag
catgttatgataaagctaaatacagatttataaattgtttgcctcttata
tctagtgtcccagggtggcttctcttgctacaataaacatcatgttcata
acaatttgagaggaaaggatttgtttggcttacagagtacatcaccaagg
gaagccaggtaaagaactcaagccaaaaactaggaagtgggagctgaagt
agaagctaccacaggactctgctaaatggcttgctttctccctggcttgt
tcatcttccttttcatacagctcttgcccacatacctttggaaagcccta
gcgaactgggccctcctgaatgaactatctattaagataatgcctcgcaa
acatcccacttgcaaattcacagaagaaattcctcaagtacgatgcccca
ttccctggtatctctgtttgtgtcaaattgataaaaaccaatcaacatat
ctagaagtaataaataagaatttaaaagaaagaatacgtttaaaacctaa
aacaaaggcatagttatgagagtcctcatagaaaatagaaaaaaaaaaaa
aactttgtctctgtactccttcaggggtatttttgtttctattctaagga
gaatgagtatccaccaatgggtcttccctcttcttgacttttgggtgtgc
aattgtattcttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59626491_59627600
seq2: B6Ng01-327P17.b_46_1152

seq1  GAATTCTTCAGTAGTAAACACAAGTATTTAACTTTGTCTATTTTAAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTAGTAAACACAAGTATTTAACTTTGTCTATTTTAAACTA  50

seq1  AGATAAATGTAGTCTGCAGATATTAGGCAATCAACAAGATTTTTTATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATGTAGTCTGCAGATATTAGGCAATCAACAAGATTTTTTATAAG  100

seq1  ACTAGAAGACTAAGTTCAAAATATATAGAAAAGGGATATTATACATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGACTAAGTTCAAAATATATAGAAAAGGGATATTATACATGTTC  150

seq1  AATCCTGCTGATTTCTAGGCCATGTCTATAATGATAGAATTGATAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCTGATTTCTAGGCCATGTCTATAATGATAGAATTGATAAGCAG  200

seq1  ATTCTGAGTGTCAGTATAGTCATAATTCAATTTCTGAGAGTGTAGTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGTGTCAGTATAGTCATAATTCAATTTCTGAGAGTGTAGTTGGC  250

seq1  TCCGACAATCTTTGTTGAGTAATGATCCACTCTACTATATCTATCCATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACAATCTTTGTTGAGTAATGATCCACTCTACTATATCTATCCATGT  300

seq1  AGAATATTCTATAATTTATAGAACAAACGTCAGGTATATTATTGTTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTCTATAATTTATAGAACAAACGTCAGGTATATTATTGTTATTA  350

seq1  TTATTATGATTATCATCATCATCATCACCTTTATTTTCCTTGTGGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGATTATCATCATCATCATCACCTTTATTTTCCTTGTGGATGAA  400

seq1  CATACCATCTATTTTACAATTGCTGCTCAAAAATGGGTTAAAAATATCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCATCTATTTTACAATTGCTGCTCAAAAATGGGTTAAAAATATCCA  450

seq1  TTTTCCTCAAACACCAAATGCTATTAGATGCATTAGTGATTACTTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCAAACACCAAATGCTATTAGATGCATTAGTGATTACTTGAAAT  500

seq1  AAAAGTATCTGTGACTTTAACGTGCAGTGTGTGATGAAAATACTTTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCTGTGACTTTAACGTGCAGTGTGTGATGAAAATACTTTCAGA  550

seq1  AATGCTTTTATTTATAGAAATAACTTTAAAGAAATATGTTTTGAGAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTTATTTATAGAAATAACTTTAAAGAAATATGTTTTGAGAAGCA  600

seq1  GCTTTGGGTTAGCATCATGTTTTGTTAAAAAGATACCTAAAATGAACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGTTAGCATCATGTTTTGTTAAAAAGATACCTAAAATGAACTCA  650

seq1  TCCAAGATACTAATTGTTCATCTATTTTCCTCGTATTATTTACTCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATACTAATTGTTCATCTATTTTCCTCGTATTATTTACTCAAAAA  700

seq1  ACAAACCAAGTTGCAAACCAAAGTCTCAGACTCTAACGTATTAAAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAGTTGCAAACCAAAGTCTCAGACTCTAACGTATTAAAATTAA  750

seq1  AGGACAAAAATCTCCATTTGAGTTCCCTGATTTACCAGGTTTCTAGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAAATCTCCATTTGAGTTCCCTGATTTACCAGGTTTCTAGGTTG  800

seq1  TAGCAATCTGGTGTAATCCTCACATGTAAGCTAGCAGATGTATATGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATCTGGTGTAATCCTCACATGTAAGCTAGCAGATGTATATGAGTC  850

seq1  TTCGTGACACTGACTGTTAATTCTCGGTAGAGACATGGCCTGTGGTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGACACTGACTGTTAATTCTCGGTAGAGACATGGCCTGTGGTTGCT  900

seq1  AGTCCAATAGCAGCGAGTGGGTAAATTATAAGCCTGCTGTTGTTTTTGGA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTCCAATAGCAGCGAGTGGGTAAATTATAAGCCTGCTGTTG-TTTTGGA  949

seq1  GCATTCTACATGTGTCATTACAGATAATCTAGTACAAAATAAAGATGTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTACATGTGTCATTACAGATAATCTAGTACAAAATAAAGATGTAC  999

seq1  TATTCATTACCTGTATGATGCAAATATTAGTGCTAATAGAGATGACTGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATTCATTACCTGTATGATGCAAATATTAGTGCTAATAGAGATGACTGA-  1048

seq1  GGAATCC-TTAGCATGAAGATGAAATTGGCTTT-GTGTTTGCTTGAGAGA  1098
      ||||||| ||||||||||||||||  ||||||| |||||||| |||||||
seq2  GGAATCCTTTAGCATGAAGATGAA--TGGCTTTGGTGTTTGC-TGAGAGA  1095

seq1  CAGCAAGAGAAA  1110
      ||||||||||||
seq2  CAGCAAGAGAAA  1107


seq1: chr17_59802728_59803851
seq2: B6Ng01-327P17.g_68_1182 (reverse)

seq1  CCCAAG-ATACAATTTGCAACACACAAAAAAAATCAAGAAGAGGGAAGAC  49
      |||||| |||||| |||| |||| |   |||| |||||||||||||||||
seq2  CCCAAGAATACAA-TTGC-ACACCC---AAAAGTCAAGAAGAGGGAAGAC  45

seq1  CAATGGGTGGATACTTCATTCCTCCTTAGAATAAGGAAC-AAAATACCCC  98
      | || ||||||||| ||||| ||||||||||| || ||| ||||||||||
seq2  CCATTGGTGGATAC-TCATT-CTCCTTAGAAT-AGAAACAAAAATACCCC  92

seq1  TGAAAGGAGTTACAGAGACAAAGTTTTTTTTTTTTTTTCTATTTTCTATT  148
      || |||||| ||||||||||||| |||||||||||||||||||||||| |
seq2  TG-AAGGAG-TACAGAGACAAAG-TTTTTTTTTTTTTTCTATTTTCTA-T  138

seq1  GAGGCTTCTCATAACTATGCCTTTGTTTTAGGTTTT-AACGTATTCTTTC  197
      ||||  |||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGACTCTCATAACTATGCCTTTGTTTTAGGTTTTAAACGTATTCTTTC  188

seq1  TTTT-AATTCTTATTTATTTACTTCTAGATATGTTGATTGGTTTTTATCA  246
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTAAATTCTTATTTA-TTACTTCTAGATATGTTGATTGGTTTTTATCA  237

seq1  ATTTGACACAAACAGAGATACCAGGGAATGGGGCATCGTACTTGAGGAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACACAAACAGAGATACCAGGGAATGGGGCATCGTACTTGAGGAAT  287

seq1  TTCTTCTGTGAATTTGCAAGTGGGATGTTTGCGAGGCATTATCTTAATAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTGAATTTGCAAGTGGGATGTTTGCGAGGCATTATCTTAATAG  337

seq1  ATAGTTCATTCAGGAGGGCCCAGTTCGCTAGGGCTTTCCAAAGGTATGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCATTCAGGAGGGCCCAGTTCGCTAGGGCTTTCCAAAGGTATGTG  387

seq1  GGCAAGAGCTGTATGAAAAGGAAGATGAACAAGCCAGGGAGAAAGCAAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAGCTGTATGAAAAGGAAGATGAACAAGCCAGGGAGAAAGCAAGC  437

seq1  CATTTAGCAGAGTCCTGTGGTAGCTTCTACTTCAGCTCCCACTTCCTAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGCAGAGTCCTGTGGTAGCTTCTACTTCAGCTCCCACTTCCTAGT  487

seq1  TTTTGGCTTGAGTTCTTTACCTGGCTTCCCTTGGTGATGTACTCTGTAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTTGAGTTCTTTACCTGGCTTCCCTTGGTGATGTACTCTGTAAG  537

seq1  CCAAACAAATCCTTTCCTCTCAAATTGTTATGAACATGATGTTTATTGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAATCCTTTCCTCTCAAATTGTTATGAACATGATGTTTATTGTA  587

seq1  GCAAGAGAAGCCACCCTGGGACACTAGATATAAGAGGCAAACAATTTATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAAGCCACCCTGGGACACTAGATATAAGAGGCAAACAATTTATA  637

seq1  AATCTGTATTTAGCTTTATCATAACATGCTTTTCACAATGTTAAGAATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTATTTAGCTTTATCATAACATGCTTTTCACAATGTTAAGAATAA  687

seq1  ATATTATCACTAGCATACCCTTCTGAAATATTTTTAACCAGGAACCATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCACTAGCATACCCTTCTGAAATATTTTTAACCAGGAACCATGA  737

seq1  AACTTTTACTCATCTTCTCCCCGAGCTTGGATTTTGTTCTCTTTATAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTACTCATCTTCTCCCCGAGCTTGGATTTTGTTCTCTTTATAGTT  787

seq1  TTAGATTTTTCACTTTCAGGAATGAATGCTGCTTTCAGAAGAAGCTTGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTTCACTTTCAGGAATGAATGCTGCTTTCAGAAGAAGCTTGTC  837

seq1  AAGAACAGGCAAATCGAAACTTGCATAAAATAACTGACCAAAATAACACT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGCAAATCGAAACTTGCATAAAATAACTGACCAAAATAACACT  887

seq1  TCAGTATAGTCAGTGTTCACTTAGTATAGTTAAGGCATTGCTCACTCACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATAGTCAGTGTTCACTTAGTATAGTTAAGGCATTGCTCACTCACT  937

seq1  TGTACTCCCTCTATTTCACATGGATTTGCTTAGCTACCTTTTTTGGGGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCCTCTATTTCACATGGATTTGCTTAGCTACCTTTTTTGGGGGG  987

seq1  GAAGTTTAAGGATACTTATCTAGCAGTGATACTATACACAGTGAGCAGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTAAGGATACTTATCTAGCAGTGATACTATACACAGTGAGCAGGG  1037

seq1  CATTGCTTACCTTAATTCACAATCAAGACCTCTTTTAACATATCTTCCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTACCTTAATTCACAATCAAGACCTCTTTTAACATATCTTCCCA  1087

seq1  GAAAGCAATGATGATCTCTAGAGAATTC  1124
      ||||||||||||||||||||||||||||
seq2  GAAAGCAATGATGATCTCTAGAGAATTC  1115


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