BAC Information

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BAC

Clone NameB6Ng01-329G17
Chromosome17 (Build37)
Map Location 26,289,080 - 26,424,772
singlet/doubletdoublet
Overlap geneAxin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
Upstream geneClcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28
Downstream geneEG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329G17.bB6Ng01-329G17.g
ACCGA116389GA116390
length6741,032
definitionB6Ng01-329G17.b B6Ng01-329G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,424,099 - 26,424,772)(26,289,080 - 26,290,113)
sequence
gaattctttgcttctgttataaacctgtgggtctctcattacagaggctg
accttaaactcctagcctcaagcaatcctcctgccttactctgccaggac
ctcaagctccccatatgtgtcaccaaaaccagctcagagccatttcctta
ttgatccatggtagctcttggcagctaatgtgcaagtctgaaggaggagt
ctggcgccctgctcctgcagttccctggacccagaaggctgagctaggag
attccaggccagcctggaaactagagcaagacctgctcacactagaggag
gacaaggagaaagagggaaaagacaagaaagcaggagccagggaggaaag
agtggacaaagaggaagagaagggagaaagcacagggagagagatcctct
gtgagtttctagcgtcttattcttctttttctcagaaccagggtgaagcc
taggtctcaggcttgtaagtagggtgtaggttatgaaggagagtgtaaaa
atgggtattgtttagtttggtctgagcgacttctttttctgcccaagaca
gggagatcctaacttcttccccaactctacttgatggagacatgaaaaga
acatgaggcacacaggcaagtgatgaggattccctgcacccagaggcaga
tccccaaccccatacctcttgagg
gaattcagaggctccaatgagaacatctggtttcacttgatcttagccaa
atgatcaggaagctgtgagagaacatctatctagtttcagaggagggtgt
agtctgctgagcctgtggttgaagacacaggcacaggatgtcttagactg
acttgacctgtggtactatctctttatggccatttgtggctaaaaattca
tcatttagtctgacttccttgtagtcctcttgtgtactcttgctgtttgg
acatggggctaagagagagagcaagtccttgttgctgtgcctaccatttt
ccagatgtctggctggatctgtggagtgaattcttattacatgacctcag
aatgagaaagctggagactcctagtctttttttttttttttttttttttt
tgagacagggtttctctgtatagtcctggctgtcctggaactcactttgt
agaccaggctgtcctcagaaatccgcctgcctctgcctcctgagtgctgg
gattaaaggtgtgtgccaccactgcccggcgacagtctttttttaaatat
gagtacacttgtagctgttttcagacacattagaagagggcatctgatcc
cattacagatggttgtgagccaccatgtggttgctgggaattgaactcag
gacctctccaagagcagtcagtattcaacctctgagccatcactctagcc
ccttcctagatagtcttgacttacagatttggattctcgagaggaaacct
tgagagttgtcacctttagtgtctgggtagctctctggcccttttggaac
ttatatttctcccccattaccattaagaaatgtctgcacggaagccagtg
catgaactgtgctaagttcagtgctctggtgctaagttccccaggggggt
gttttccctacatccaaaagtattttttttttccataatttgtttaattt
atgtgacgtgcttgagtgtcagatccctggaactagaagaacaggtatga
ctgccatgtagttgctgggaaatggaacctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26424099_26424772
seq2: B6Ng01-329G17.b_47_720 (reverse)

seq1  CCTCAAGAGGTCTGGGGTTGGGGATCTGCCTCTGGGTGCAGGGAATCCTC  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGAGGTATGGGGTTGGGGATCTGCCTCTGGGTGCAGGGAATCCTC  50

seq1  ATCACTTGCCTGTGTGCCTCATGTTCTTTTCATGTCTCCATCAAGTGGAG  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCACTTGCCTGTGTGCCTCATGTTCTTTTCATGTCTCCATCAAGTAGAG  100

seq1  TTGGGGAAGAAGTTAGGATCTCCCTGTCTTGGGCAGAAAAAGAAGTCGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAGAAGTTAGGATCTCCCTGTCTTGGGCAGAAAAAGAAGTCGCT  150

seq1  CAGACCAAACTAAACAATACCCATTTTTACACTCTCCTTCATAACCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAACTAAACAATACCCATTTTTACACTCTCCTTCATAACCTACA  200

seq1  CCCTACTTACAAGCCTGAGACCTAGGCTTCACCCTGGTTCTGAGAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTTACAAGCCTGAGACCTAGGCTTCACCCTGGTTCTGAGAAAAAG  250

seq1  AAGAATAAGACGCTAGAAACTCACAGAGGATCTCTCTCCCTGTGCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAGACGCTAGAAACTCACAGAGGATCTCTCTCCCTGTGCTTTCT  300

seq1  CCCTTCTCTTCCTCTTTGTCCACTCTTTCCTCCCTGGCTCCTGCTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTTCCTCTTTGTCCACTCTTTCCTCCCTGGCTCCTGCTTTCTT  350

seq1  GTCTTTTCCCTCTTTCTCCTTGTCCTCCTCTAGTGTGAGCAGGTCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCCCTCTTTCTCCTTGTCCTCCTCTAGTGTGAGCAGGTCTTGCT  400

seq1  CTAGTTTCCAGGCTGGCCTGGAATCTCCTAGCTCAGCCTTCTGGGTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTCCAGGCTGGCCTGGAATCTCCTAGCTCAGCCTTCTGGGTCCAG  450

seq1  GGAACTGCAGGAGCAGGGCGCCAGACTCCTCCTTCAGACTTGCACATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGCAGGAGCAGGGCGCCAGACTCCTCCTTCAGACTTGCACATTAG  500

seq1  CTGCCAAGAGCTACCATGGATCAATAAGGAAATGGCTCTGAGCTGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGAGCTACCATGGATCAATAAGGAAATGGCTCTGAGCTGGTTTT  550

seq1  GGTGACACATATGGGGAGCTTGAGGTCCTGGCAGAGTAAGGCAGGAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACACATATGGGGAGCTTGAGGTCCTGGCAGAGTAAGGCAGGAGGAT  600

seq1  TGCTTGAGGCTAGGAGTTTAAGGTCAGCCTCTGTAATGAGAGACCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGGCTAGGAGTTTAAGGTCAGCCTCTGTAATGAGAGACCCACAG  650

seq1  GTTTATAACAGAAGCAAAGAATTC  674
      ||||||||||||||||||||||||
seq2  GTTTATAACAGAAGCAAAGAATTC  674

seq1: chr17_26289080_26290113
seq2: B6Ng01-329G17.g_67_1098

seq1  GAATTCAGAGGCTCCAATGAGAACATCTGGTTTCACTTGATCTTAGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCTCCAATGAGAACATCTGGTTTCACTTGATCTTAGCCAA  50

seq1  ATGATCAGGAAGCTGTGAGAGAACATCTATCTAGTTTCAGAGGAGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAGGAAGCTGTGAGAGAACATCTATCTAGTTTCAGAGGAGGGTGT  100

seq1  AGTCTGCTGAGCCTGTGGTTGAAGACACAGGCACAGGATGTCTTAGACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTGAGCCTGTGGTTGAAGACACAGGCACAGGATGTCTTAGACTG  150

seq1  ACTTGACCTGTGGTACTATCTCTTTATGGCCATTTGTGGCTAAAAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACCTGTGGTACTATCTCTTTATGGCCATTTGTGGCTAAAAATTCA  200

seq1  TCATTTAGTCTGACTTCCTTGTAGTCCTCTTGTGTACTCTTGCTGTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTCTGACTTCCTTGTAGTCCTCTTGTGTACTCTTGCTGTTTGG  250

seq1  ACATGGGGCTAAGAGAGAGAGCAAGTCCTTGTTGCTGTGCCTACCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGCTAAGAGAGAGAGCAAGTCCTTGTTGCTGTGCCTACCATTTT  300

seq1  CCAGATGTCTGGCTGGATCTGTGGAGTGAATTCTTATTACATGACCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTCTGGCTGGATCTGTGGAGTGAATTCTTATTACATGACCTCAG  350

seq1  AATGAGAAAGCTGGAGACTCCTAGTCTTTTTTTTTTTTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAAAGCTGGAGACTCCTAGTCTTTTTTTTTTTTTTTTTTTTTTTT  400

seq1  TGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGT  450

seq1  AGACCAGGCTGTCCTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGTCCTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGG  500

seq1  GATTAAAGGTGTGTGCCACCACTGCCCGGCGACAGTCTTTTTTTAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGTGTGTGCCACCACTGCCCGGCGACAGTCTTTTTTTAAATAT  550

seq1  GAGTACACTTGTAGCTGTTTTCAGACACATTAGAAGAGGGCATCTGATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACTTGTAGCTGTTTTCAGACACATTAGAAGAGGGCATCTGATCC  600

seq1  CATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAG  650

seq1  GACCTCTCCAAGAGCAGTCAGTATTCAACCTCTGAGCCATCACTCTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCCAAGAGCAGTCAGTATTCAACCTCTGAGCCATCACTCTAGCC  700

seq1  CCTTCCTAGATAGTCTTGACTTACAGATTTGGATTCTCGAGAGGAAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTAGATAGTCTTGACTTACAGATTTGGATTCTCGAGAGGAAACCT  750

seq1  TGAGAGTTGTCACCTTTAGTGTCTGGGTAGCTCTCTGGCCCTTTTGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTGTCACCTTTAGTGTCTGGGTAGCTCTCTGGCCCTTTTGGAAC  800

seq1  TTATATTTCTCCCCCATTACCATTAAGAAATGTCTGCACGGAAGCCAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTCTCCCCCATTACCATTAAGAAATGTCTGCACGGAAGCCAGTG  850

seq1  CATGAACTGTGCTAAGTTCAGTGCTCTGGTGCTAAGTT-CCCAGGGGGGT  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CATGAACTGTGCTAAGTTCAGTGCTCTGGTGCTAAGTTCCCCAGGGGGGT  900

seq1  G-TTTCCCTACATCCAAAAAGTATTTTTTTTTTCAATAATTTGTTTAATT  948
      | ||||||||||||| |||||||||||||||||| ||||||||||||| |
seq2  GTTTTCCCTACATCC-AAAAGTATTTTTTTTTTCCATAATTTGTTTAA-T  948

seq1  TTATGTG-CGTTGGTTTGAGGTTGTCAGATCCCCTGGAACTAGA--GACA  995
      ||||||| |||  | |||||  |||||||| |||||||||||||   |||
seq2  TTATGTGACGT--GCTTGAG--TGTCAGAT-CCCTGGAACTAGAAGAACA  993

seq1  GTTATGAACTGCCATGTAGTTGCTGGG-AATTGAACCTGG  1034
      | |||| |||||||||||||||||||| ||| ||||||||
seq2  GGTATG-ACTGCCATGTAGTTGCTGGGAAATGGAACCTGG  1032