BAC Information

Click to search

BAC

Clone NameB6Ng01-330C18
Chromosome17 (Build37)
Map Location 12,675,109 - 12,676,012
singlet/doubletsinglet
Overlap geneSlc22a3
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, LOC100041192
Downstream geneSlc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330C18.bB6Ng01-330C18.g
ACCGA116927GA116928
length9071,157
definitionB6Ng01-330C18.b B6Ng01-330C18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttgattattttatatcttgtgaatcttttttccctatttgtg
gggtttaaggggtgaccagttgtcttcaactgccagggactttcctagtt
ttaacattgaaagatccttgtcaggaaactccctcaattctggaaaatca
gggtagctggcctgtcaccttaagagtttatcggctggaggcaatggaag
aaattgacatctagatgctggacacagcatcctatgagaaacttctgcaa
aaagggccaaccattcaaggcatcccgctcgggaggagtctgggggcata
gagatagtgggaagtttgtgaagctgcccactgaggtggataaaagacat
gaaagggatttcaagacagagaagagtttggaggtaggaaggcaagagct
tgggcatacaggctcactaagacttggggaagatatgtgtactgtccatc
ttggaggaaacaggcaaggattctggccttctcacctgcagacccagccc
tgtgggaaacccttggtacctaagtcacccagcagttccaagccccttgc
ccactttgtacctctggctcccacattgctgctgctgtgtgttgcctcag
gcacccatatttaggccttctgccagcatgacgatgctaaccctgaggag
aacatttgatccctaggagagaaaagcctttgagcgtcccagggagctct
gtgaagccactgccctgagcggcagctgccaggacaggcagaggaaggag
tccttttctcagctccagtctttcaaccctcctggtttctgatgacctag
taactaagtttcacaggccacccctgccccagatcctgctttctgggacc
acaggtcggagaagatggtggaaagagcaagcaaacagtggggagggtgg
gggaggg
gaattcaaggtcaatatgacctgtgtaatgaggcattgtctctgtgctat
ttaattaaaataattaaacattttattttatgtgtatgggtgttttgcct
gcatgtatgttggtacagtgctgctgagtccagaagagggcattggatcc
tctagtcagttattagttgctatgtggaggctgggaaccaaatctaggtc
ctctgcaagagcatccagtgcccctaatcactgaagaatcactcagcccc
ttgattagtttttattgtaaacttggcacaacctagagtcacttgggaag
caggaacctcatttgagtaattgcccagatcagattggcctgtggccacc
tctgtgagagattttctccgttgatgactgatataggagggcctagccta
agctaggtgggtggtgccgttcctaagcaagtgggcctgggctaaggtag
cagaggaagccagagagtgatccaggaaccagggttcctctatggttcca
gtctctaagttcctgccttgagatcctcagtggtggaatgtgacctggaa
gtgtaagctaaataaatcctaaactgcttttggccagagggtttactttt
tattttatttattttattttattttattttattttattttattttatttt
attttattaaatacgagtaacagaaaggaagctagaacagttttgacctc
ctctctaccccccaaggtgtatattagtggtagagagtttgcttagcaca
tacaagcatacaaggccctaggttcaatcctcagtatggaaaagcaatgc
agcaaactcagtggttgaccactggactgcagatggccacacagcttcct
ttgttctttgttttagtctctagttgtaatttttaataataaccacacta
atatttttggcttttagattttaaattggagatatataactttaagaggt
gttgctttgatttccccccagccaccccataacagagttatagcaaatgg
ggtgctagttcttcatggtttggggtttcacaggtactgtgtgctgaact
ccagttctcatagaaaacaagcgaattaccaccaggtcaatgtgcttcat
gtcctaggccaaggcctgagggctctgaactctcttgccttcctggacct
ggactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12675109_12676012
seq2: B6Ng01-330C18.b_52_958

seq1  GAATTCATTTGATTATTTTATATCTTGTGAATCTTTTTTCCCTATTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGATTATTTTATATCTTGTGAATCTTTTTTCCCTATTTGTG  50

seq1  GGGTTTAAGGGGTGACCAGTTGTCTTCAACTGCCAGGGACTTTCCTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAAGGGGTGACCAGTTGTCTTCAACTGCCAGGGACTTTCCTAGTT  100

seq1  TTAACATTGAAAGATCCTTGTCAGGAAACTCCCTCAATTCTGGAAAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTGAAAGATCCTTGTCAGGAAACTCCCTCAATTCTGGAAAATCA  150

seq1  GGGTAGCTGGCCTGTCACCTTAAGAGTTTATCGGCTGGAGGCAATGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCTGGCCTGTCACCTTAAGAGTTTATCGGCTGGAGGCAATGGAAG  200

seq1  AAATTGACATCTAGATGCTGGACACAGCATCCTATGAGAAACTTCTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACATCTAGATGCTGGACACAGCATCCTATGAGAAACTTCTGCAA  250

seq1  AAAGGGCCAACCATTCAAGGCATCCCGCTCGGGAGGAGTCTGGGGGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCCAACCATTCAAGGCATCCCGCTCGGGAGGAGTCTGGGGGCATA  300

seq1  GAGATAGTGGGAAGTTTGTGAAGCTGCCCACTGAGGTGGATAAAAGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGTGGGAAGTTTGTGAAGCTGCCCACTGAGGTGGATAAAAGACAT  350

seq1  GAAAGGGATTTCAAGACAGAGAAGAGTTTGGAGGTAGGAAGGCAAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGATTTCAAGACAGAGAAGAGTTTGGAGGTAGGAAGGCAAGAGCT  400

seq1  TGGGCATACAGGCTCACTAAGACTTGGGGAAGATATGTGTACTGTCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATACAGGCTCACTAAGACTTGGGGAAGATATGTGTACTGTCCATC  450

seq1  TTGGAGGAAACAGGCAAGGATTCTGGCCTTCTCACCTGCAGACCCAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAAACAGGCAAGGATTCTGGCCTTCTCACCTGCAGACCCAGCCC  500

seq1  TGTGGGAAACCCTTGGTACCTAAGTCACCCAGCAGTTCCAAGCCCCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAACCCTTGGTACCTAAGTCACCCAGCAGTTCCAAGCCCCTTGC  550

seq1  CCACTTTGTACCTCTGGCTCCCACATTGCTGCTGCTGTGTGTTGCCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTGTACCTCTGGCTCCCACATTGCTGCTGCTGTGTGTTGCCTCAG  600

seq1  GCACCCATATTTAGGCCTTCTGCCAGCATGACGATGCTAACCCTGAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATATTTAGGCCTTCTGCCAGCATGACGATGCTAACCCTGAGGAG  650

seq1  AACATTTGATCCCTAGGAGAGAAAAGCCTTTGAGCGTCCCAGGGAGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGATCCCTAGGAGAGAAAAGCCTTTGAGCGTCCCAGGGAGCTCT  700

seq1  GTGAAGCCACTGCCCTGAGCGGCAGCTGCCAGGACAGGCAGAGGAAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCCACTGCCCTGAGCGGCAGCTGCCAGGACAGGCAGAGGAAGGAG  750

seq1  TCCTTTTCTCAGCTCCAGTCTTTCAACCCTCCTGGTTTCTGATGACCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTCAGCTCCAGTCTTTCAACCCTCCTGGTTTCTGATGACCTAG  800

seq1  TAACTAAG-TTCACAGGCCACCCCTGCCCCAGATCCTGCTTTCTGGGACC  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGTTTCACAGGCCACCCCTGCCCCAGATCCTGCTTTCTGGGACC  850

seq1  ACAGGTCGGAGAAGATGGTGGAAAGAGCAAGCAAACAGTGGGGAGG--TG  897
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  ACAGGTCGGAGAAGATGGTGGAAAGAGCAAGCAAACAGTGGGGAGGGTGG  900

seq1  GGGAGGG  904
      |||||||
seq2  GGGAGGG  907