BAC Information

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BAC

Clone NameB6Ng01-331O18
Chromosome17 (Build37)
Map Location 39,536,055 - 39,537,164
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626985, LOC100043297
Downstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331O18.bB6Ng01-331O18.g
ACCGA118168GA118169
length1,1661,102
definitionB6Ng01-331O18.b B6Ng01-331O18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagagtaaagaaacttagcaaagtagctagattcaaactgaac
tcaaataaattagtagccctcgtttatacaaatcatagttgaggtgagaa
agaaattagggtgacaagaccctttacaatagctccacataacataaaat
atcttagtgtaactctaataaagcaaatgaaaaaacagtatggcaaggac
ttcaagtctataaagaaagaaatagaggaaaatatcagaagatgaaacta
tgagccatgctcatggatcagtatgattaacatattaaacatggcaatct
taacaaagcagtttaccaattcccaaagcaatcaacacaattactataaa
aattccagcacacttctttacagaattaaaaaaatatatatagtttcttg
ttgaaaatcagagaaacaaaatgaacaaacaaacaaaaaacaaatccagg
aaagataatataaccatgtgtaataaaagaacttctgggtatattaccat
ctctcagctcaagctgtattacctagaagtagaaacagaaactccatgga
attgctactgaaacaggcagattgatcaatgtagttgaatcaaagatcaa
gaaataaagctgcacacctaggtacatttgatttttttacaaaaagacaa
aaccatacaacagggaaaatatattcaacaaatggtactagtcaaattct
agatctacttgtagaagaatgcaaatagatccatgattcttgccctgcac
aaaatgtaagaccaagggtatcaaacacttcaacataaagtcagacactc
tgaatcccataaaaaaaaaacgaaatttgagaatagcatttaatgcattg
atacaagagattatttcctgaaaaaaaaatgtaaaaggctcagctctaat
atcaacaattgcaaattgaaacctcatgggaaaaaaaaaaagttactttt
aggcaagggtattgcccaattggacaaacaaaaaacagacacactgggaa
aacttccctaatttatatctaaagaaatatttggaaataatgagactcag
tatactctaaaaacacatataccagttaggaaatgagaatagagctaacc
gagtgatcaacgagtattatatgccgagcatacttacaatgtgtcaatcc
tgtagtcaggaaaatc
gaattctgtgataggatacttgaaggggagaagatttcagatataaataa
acaaaataatgaattaaaaggtaaaaaataagaaaatagaatcctatagt
tatttttatgttttacttacctaaaacctgggataataatatttatctac
tgtatcctctgatgccagtgtgaatttcataaggatgggtttcatgaata
agcacttggaagtttcaataaggggttacttgtacagtaatgaatatttt
gaactctccagttaattcaattcacagaggttctgttctttagaaggaaa
ctaatccatttgtcttgaagtgaggaacagtgcagctgtataaacaagga
agaagagaatctcttaacacagagtttctttgttatgaatgtgatttcac
cttgtatgactgaaaacactgcaacatcatccaactcaattattgttgac
tcagaaagattaaaataaagaaatatgtgaattacacctatatagtgatc
tataaagatggatattttattttatttactattagtcaataatatttgat
caagcattaacttttatttccattagttttctttcttcaattaaagaatt
agcatatattctttgattaaaaccatataagttgatgaatacttttattt
ggaagaataacttcattactaaacattctggagatttgtaaatcaagctt
atctatgtctttttgaatagtctgggaagaatttacatctggatcataat
tgaggaataaagacccaatatgtatattcatatgtataaacaatatgtat
aaacattctggagatttgtaaatcaagctaatctatgtctttttgaatag
tctgggaagaatttacatctggatcataattgaggaagaagactcaatat
gtatattgagtcagtaaaataggtggatccaactttgtacatctacaata
tcacagtatattgattagaaaacaaatccccaagccaaattaactctgta
aggccataatggcagcagtctcatagcataaaagagtcagtcagaatgaa
aaggtattgtcatactgcattcattaaacatttgttagagagttcataca
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39536055_39537164
seq2: B6Ng01-331O18.g_70_1171 (reverse)

seq1  CCTGTATGACCTTCCTCTTAC-AATGTTTAATGAATGCAAGTATAAACAA  49
      ||||||||| ||  |||| || |||||||||||||||| |||||  ||| 
seq2  CCTGTATGAACT--CTCTAACAAATGTTTAATGAATGC-AGTAT-GACA-  45

seq1  ATAAACCTTTTCATTTCTGACTTGACTC-TTTATGCTATGGAGACTGCTT  98
        | ||||||||| ||||||| |||||| |||||||||| |||||||| |
seq2  --ATACCTTTTCA-TTCTGAC-TGACTCTTTTATGCTAT-GAGACTGC-T  89

seq1  GCCATTATGGCC-TACAGAGTTAATTTGGCTTGGGGATTTG-TTTCTAAT  146
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  GCCATTATGGCCTTACAGAGTTAATTTGGCTTGGGGATTTGTTTTCTAAT  139

seq1  CAATATACTGTGATATTGTAGATGTACAAAGTTGGATCCACCTATTTTAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACTGTGATATTGTAGATGTACAAAGTTGGATCCACCTATTTTAC  189

seq1  TGACTCAATATACATATTGAGTCTTTCTTCCTCAATTATGATCCAGATGT  246
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGACTCAATATACATATTGAGTC-TTCTTCCTCAATTATGATCCAGATGT  238

seq1  AAATTCTTCCCAGACTATTCAAAAAGACATAGATTAGCTTGATTTACAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCCCAGACTATTCAAAAAGACATAGATTAGCTTGATTTACAAA  288

seq1  TCTCCAGAATGTTTATACATATTGTTTATACATATGAATATACATATTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAATGTTTATACATATTGTTTATACATATGAATATACATATTGG  338

seq1  GTCTTTATTCCTCAATTATGATCCAGATGTAAATTCTTCCCAGACTATTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATTCCTCAATTATGATCCAGATGTAAATTCTTCCCAGACTATTC  388

seq1  AAAAAGACATAGATAAGCTTGATTTACAAATCTCCAGAATGTTTAGTAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACATAGATAAGCTTGATTTACAAATCTCCAGAATGTTTAGTAAT  438

seq1  GAAGTTATTCTTCCAAATAAAAGTATTCATCAACTTATATGGTTTTAATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATTCTTCCAAATAAAAGTATTCATCAACTTATATGGTTTTAATC  488

seq1  AAAGAATATATGCTAATTCTTTAATTGAAGAAAGAAAACTAATGGAAATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATATGCTAATTCTTTAATTGAAGAAAGAAAACTAATGGAAATA  538

seq1  AAAGTTAATGCTTGATCAAATATTATTGACTAATAGTAAATAAAATAAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAATGCTTGATCAAATATTATTGACTAATAGTAAATAAAATAAAA  588

seq1  TATCCATCTTTATAGATCACTATATAGGTGTAATTCACATATTTCTTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATCTTTATAGATCACTATATAGGTGTAATTCACATATTTCTTTAT  638

seq1  TTTAATCTTTCTGAGTCAACAATAATTGAGTTGGATGATGTTGCAGTGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTTCTGAGTCAACAATAATTGAGTTGGATGATGTTGCAGTGTT  688

seq1  TTCAGTCATACAAGGTGAAATCACATTCATAACAAAGAAACTCTGTGTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATACAAGGTGAAATCACATTCATAACAAAGAAACTCTGTGTTA  738

seq1  AGAGATTCTCTTCTTCCTTGTTTATACAGCTGCACTGTTCCTCACTTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCTCTTCTTCCTTGTTTATACAGCTGCACTGTTCCTCACTTCAA  788

seq1  GACAAATGGATTAGTTTCCTTCTAAAGAACAGAACCTCTGTGAATTGAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGGATTAGTTTCCTTCTAAAGAACAGAACCTCTGTGAATTGAAT  838

seq1  TAACTGGAGAGTTCAAAATATTCATTACTGTACAAGTAACCCCTTATTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGAGAGTTCAAAATATTCATTACTGTACAAGTAACCCCTTATTGA  888

seq1  AACTTCCAAGTGCTTATTCATGAAACCCATCCTTATGAAATTCACACTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCAAGTGCTTATTCATGAAACCCATCCTTATGAAATTCACACTGG  938

seq1  CATCAGAGGATACAGTAGATAAATATTATTATCCCAGGTTTTAGGTAAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGGATACAGTAGATAAATATTATTATCCCAGGTTTTAGGTAAGT  988

seq1  AAAACATAAAAATAACTATAGGATTCTATTTTCTTATTTTTTACCTTTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAAAAATAACTATAGGATTCTATTTTCTTATTTTTTACCTTTTA  1038

seq1  ATTCATTATTTTGTTTATTTATATCTGAAATCTTCTCCCCTTCAAGTATC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTATTTTGTTTATTTATATCTGAAATCTTCTCCCCTTCAAGTATC  1088

seq1  CTATCACAGAATTC  1110
      ||||||||||||||
seq2  CTATCACAGAATTC  1102