BAC Information

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BAC

Clone NameB6Ng01-333B19
Chromosome17 (Build37)
Map Location 30,443,052 - 30,583,066
singlet/doubletdoublet
Overlap geneBtbd9, EG623169
Upstream geneLOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3
Downstream geneGlo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333B19.bB6Ng01-333B19.g
ACCGA119018GA119019
length907618
definitionB6Ng01-333B19.b B6Ng01-333B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,582,165 - 30,583,066)(30,443,052 - 30,443,667)
sequence
gaattccaagtgatacttggaatgttttgcagaatctgtggtgggatccg
gaaccagcaggtggctccgttttgtagggcaggcagggaaggcctctcta
aagaagtcagctgagccaagatgtgagttgttatctcactgttggctcag
ttgtgaaccatactcaaagagcattccagccatttggacagcaggcaagg
actgggcagtgcgtatttttggtaaagagggctctgtgtgatgggcacac
tgtagcctggggaaatgtctggctagaaaagagggcagcagataaacagg
aacccagggtttctaggccctgatggcacacaattccttctgaagatgta
gtagatgatggtaggtacaagcgaagaccttaggcagagatcatagagct
tggttcttttgagaggtcaatgtctcacaccaaacgttgatctgatatga
gaatggcttagagaaaagtcagccttggaagaaaagagaactgcgcctgg
gagggagccaccaaaggttggaaggaaagggtaggatttttagtggcatc
tgagaaagagttgcttcatgggacagtaggctgtgggcgggcgctggaga
gcatttgagcatctggctggtaaaatggggcttgttggtgatcacgataa
aagccattggaggtgttgtgggaagagggagtggactgtgaggaggtagg
atgcactaaaatgtagagacaggagcatcactgcaaagggaagcatagga
gtgcccatgagggttcaaggaggatgctttgggtgtatttgtgttcaggt
tgcgttatggccttgggacagatttgataatgcaggatatggatcttgtg
tccttgaatttggggtgtgtgacctccatcttgatctcatgatgaatatc
ttttgac
gaattcaaatgtcacatgggctccagacattacagagaagccactctgta
tctgcttcctgcatagcctcttgaggcctagagagaaggctcacaggaac
agtgggttctcagaggctgtggccccctgttgccctggatggcctagcag
agagggatcttgggagaacacaactggcccgaggagagaggagtgggtca
gggtaggacagcttctgaccacagggctctttcaccaagccccagggcat
ggccaagggaacagcttgtctctcaagcctctcagtgttcaactcaggca
ctatcagagccatggagctgaggtgatggtacactgggttgggggggggg
gcgggtgtgcactactgggaacgtggggaacatggctgcccagctcccag
gctagcctaacactctctcagcacaagggttggaggtaccagaaaatgcc
atgccgaacccacagttcacatggcatttctggagccaaggttaatctac
acggaggaaataaatgatgctatggcttttgtaaaattagagtgtggttt
ttaaaaaggtttgtctgaaatagaataaaacttattttctactgctcttt
attagcctatagtcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_30582165_30583066
seq2: B6Ng01-333B19.b_52_958 (reverse)

seq1  GTCAAAAGCTGATCCTCCTGAGCTCAAGATGGAGGTC-CCCACCCCAGA-  48
      |||||||| |  || || |||| |||||||||||||| | ||||||| | 
seq2  GTCAAAAGATATTCATCATGAGATCAAGATGGAGGTCACACACCCCAAAT  50

seq1  TCAAGGGACCAAGATCCATTTCCTGCATTATCAAATCTGTCCCAAGGCCA  98
      ||||||   |||||||||| ||||||||||||||||||||||||||||||
seq2  TCAAGGACACAAGATCCATATCCTGCATTATCAAATCTGTCCCAAGGCCA  100

seq1  TACTGCAACCTGAACACAAATACACCC-AAGCATCCTCCTTG-ACCCTCA  146
      ||  ||||||||||||||||||||||| |||||||||||||| |||||||
seq2  TAACGCAACCTGAACACAAATACACCCAAAGCATCCTCCTTGAACCCTCA  150

seq1  TGGCCACTCCTCTGCTTCCCTTTGCAGTGATGCTCCTGTCTCTACA-TTT  195
      ||| ||||||| |||||||||||||||||||||||||||||||||| |||
seq2  TGGGCACTCCTATGCTTCCCTTTGCAGTGATGCTCCTGTCTCTACATTTT  200

seq1  AGTGCATCCTACCTCCTCACAGTCCACTCCCTCTTCCCACAACACCTCCA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATCCTACCTCCTCACAGTCCACTCCCTCTTCCCACAACACCTCCA  250

seq1  ATGGCTTTTATCGTGATCACCAACAAGCCCCATTTTACCAGCCAGATGCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTTATCGTGATCACCAACAAGCCCCATTTTACCAGCCAGATGCT  300

seq1  CAAATGCTCTCCAGCGCCCGCCCACAGCCTACTGTCCCATGAAGCAACTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTCTCCAGCGCCCGCCCACAGCCTACTGTCCCATGAAGCAACTC  350

seq1  TTTCTCAGATGCCACTAAAAATCCTACCCTTTCCTTCCAACCTTTGGTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGATGCCACTAAAAATCCTACCCTTTCCTTCCAACCTTTGGTGG  400

seq1  CTCCCTCCCAGGCGCAGTTCTCTTTTCTTCCAAGGCTGACTTTTCTCTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCAGGCGCAGTTCTCTTTTCTTCCAAGGCTGACTTTTCTCTAA  450

seq1  GCCATTCTCATATCAGATCAACGTTTGGTGTGAGACATTGACCTCTCAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTCATATCAGATCAACGTTTGGTGTGAGACATTGACCTCTCAAA  500

seq1  AGAACCAAGCTCTATGATCTCTGCCTAAGGTCTTCGCTTGTACCTACCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAGCTCTATGATCTCTGCCTAAGGTCTTCGCTTGTACCTACCAT  550

seq1  CATCTACTACATCTTCAGAAGGAATTGTGTGCCATCAGGGCCTAGAAACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTACATCTTCAGAAGGAATTGTGTGCCATCAGGGCCTAGAAACC  600

seq1  CTGGGTTCCTGTTTATCTGCTGCCCTCTTTTCTAGCCAGACATTTCCCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCCTGTTTATCTGCTGCCCTCTTTTCTAGCCAGACATTTCCCCA  650

seq1  GGCTACAGTGTGCCCATCACACAGAGCCCTCTTTACCAAAAATACGCACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGTGTGCCCATCACACAGAGCCCTCTTTACCAAAAATACGCACT  700

seq1  GCCCAGTCCTTGCCTGCTGTCCAAATGGCTGGAATGCTCTTTGAGTATGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTCCTTGCCTGCTGTCCAAATGGCTGGAATGCTCTTTGAGTATGG  750

seq1  TTCACAACTGAGCCAACAGTGAGATAACAACTCACATCTTGGCTCAGCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACTGAGCCAACAGTGAGATAACAACTCACATCTTGGCTCAGCTG  800

seq1  ACTTCTTTAGAGAGGCCTTCCCTGCCTGCCCTACAAAACGGAGCCACCTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTAGAGAGGCCTTCCCTGCCTGCCCTACAAAACGGAGCCACCTG  850

seq1  CTGGTTCCGGATCCCACCACAGATTCTGCAAAACATTCCAAGTATCACTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCGGATCCCACCACAGATTCTGCAAAACATTCCAAGTATCACTT  900

seq1  GGAATTC  902
      |||||||
seq2  GGAATTC  907

seq1: chr17_30443052_30443667
seq2: B6Ng01-333B19.g_66_683

seq1  GAATTCAAATGTCACATGGGCTCCAGACATTACAGAGAAGCCACTCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTCACATGGGCTCCAGACATTACAGAGAAGCCACTCTGTA  50

seq1  TCTGCTTCCTGCATAGCCTCTTGAGGCCTAGAGAGAAGGCTCACAGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCTGCATAGCCTCTTGAGGCCTAGAGAGAAGGCTCACAGGAAC  100

seq1  AGTGGGTTCTCAGAGGCTGTGGCCCCCTGTTGCCCTGGATGGCCTAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTCTCAGAGGCTGTGGCCCCCTGTTGCCCTGGATGGCCTAGCAG  150

seq1  AGAGGGATCTTGGGAGAACACAACTGGCCCGAGGAGAGAGGAGTGGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATCTTGGGAGAACACAACTGGCCCGAGGAGAGAGGAGTGGGTCA  200

seq1  GGGTAGGACAGCTTCTGACCACAGGGCTCTTTCACCAAGCCCCAGGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGACAGCTTCTGACCACAGGGCTCTTTCACCAAGCCCCAGGGCAT  250

seq1  GGCCAAGGGAACAGCTTGTCTCTCAAGCCTCTCAGTGTTCAACTCAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGGAACAGCTTGTCTCTCAAGCCTCTCAGTGTTCAACTCAGGCA  300

seq1  CTATCAGAGCCATGGAGCTGAGGTGATGGTACACTGGGTTGGGGGGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGAGCCATGGAGCTGAGGTGATGGTACACTGGGTTGGGGGGGGGG  350

seq1  GCGGGTGTGCACTACTGGGAACGTGGGGAACATGGCTGCCCAGCTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGTGTGCACTACTGGGAACGTGGGGAACATGGCTGCCCAGCTCCCAG  400

seq1  GCTAGCCTAACACTCTCTCAGCACAAGGGTTGGAGGTACCAGAAAATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTAACACTCTCTCAGCACAAGGGTTGGAGGTACCAGAAAATGCC  450

seq1  ATGCCGAACCCACAGTTCACATGGCA-TTCTGGAGCCAAGGTTAATCTAC  499
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGCCGAACCCACAGTTCACATGGCATTTCTGGAGCCAAGGTTAATCTAC  500

seq1  ACGGAGGAAATAAATGATGCTATGGCTTTTGTAAATTTAGAGTGTGG-TT  548
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  ACGGAGGAAATAAATGATGCTATGGCTTTTGTAAAATTAGAGTGTGGTTT  550

seq1  TTAAAAAGGTTTGTCTGAAATAGAATAAAACTTATCTTCCACTGCTCTTT  598
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TTAAAAAGGTTTGTCTGAAATAGAATAAAACTTATTTTCTACTGCTCTTT  600

seq1  AGTAGCCTATAGTCAGTG  616
      | ||||||||||||||||
seq2  ATTAGCCTATAGTCAGTG  618