BAC Information

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BAC

Clone NameB6Ng01-333J03
Chromosome17 (Build37)
Map Location 23,612,513 - 23,613,664
singlet/doubletsinglet
Overlap geneEG619788
Upstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775
Downstream geneOlfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333J03.bB6Ng01-333J03.g
ACCGA119331GA119332
length1,1671,229
definitionB6Ng01-333J03.b B6Ng01-333J03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagttcattacatttgtgtgtggtgatgtgtgaatgtatatttct
cacttcctatttgtatgtttctatgtttctctatatctgtgtgtatatct
atatctgtgcctattactagatatagatgattgatatgtatatgaagaga
tatagatatatacatatataaagacagagagacacacagagagaaacaga
gagagatgagtcatatatagaaacattttgccaatctgcctatctatctg
tctaagtcagttaagaaaatatttgtctgtttccatttctttctgcatgg
tggattttgtcagaatgtatattcctttgtacaattataaatgcatgcat
cgccgggtgtggtggcaaatgcctttaatcctagcactttagagggaaag
gcagtctgatctctgatttcgaggccagcctggtctatggagtgagttat
aggacagccagggctatatagagaaaccctgtctcaaataaataaataaa
taaataaataaataaataaataaataaatgcatctgcatgtgcctgggtt
ttgtgtgtttttgttgtatgttttttcatttttgtctgattgtgcatgag
atcataaatttttcagtgtatcaatgtcactctatgtgggggtatcaata
catgtctatgtgaacctatgaatattcctctgtgcatgggttttgtgtgt
gtgtgtgtgtttgtgtaaaactgagtatgtgttttgtgtgtatcagtgtc
tatttgatgtttttgatgcatagtctgtgtctgtgtgtatgtgtgttttt
tatacatgtgtttggacatgtatttgaatgtttctgtagataagtgtgtg
cttgtgatatgtatgcatcgctaaatggatgcaagtctctttgtttcatg
tgtctgtgtttcatactgcaagtatatttgatctctacacatatgtttgt
acttgattggtaatctcttagagaactaaaataacagcaacattataatt
ttgtacatccattgaatttcactgaaattttcactggcatagtgtcaata
aagttgttcttttagaaggaaataagaacattattttcttacctttagaa
agaggaacttatatattattttctgactgtcttttcgagcttgttattcc
tttcttgaaaaaagacc
gaattctttgatttctccatctatggtaattgagagtttggctgggtata
gtagcctgggctgggatttgtgttctcttagtgtctgtataacatctgtc
caggctcttctggctttcatagtctctggtgaaaagtctggtgtaattct
gataggcctgcctttatatgttacttgacctttttcccttactgctttta
gtattctatctttatttagtgcatttgttgttctgattattatgtgtcgg
gaggaatttcttttctggtccatctatttggagttttgtaggcttcttgt
atgttcatgggcatgtctttctttatgtttgggaagttttcttctattat
tttgttgaagatattttctaatcctttgagttgaaaatcttcattctcat
caactcctattatccgtaggtttggtctgctcattatgtcctagatttcc
tggatatttgagttaggatctttttgcattttccattttctttgattgtt
gtgctgatgttctttatggaatctcctgcacctgagattctctcttccat
ctcttgtatacttttgctgatgctcgcatcaatgattccagatttctttt
ctatggtttctatctccagcattgcctcactttgggtattctttattatg
tctacttccctttttaggtcttggattgttttattcaattccatcacctg
tttggtcctgttttccttcaattcatttagggatttttgtgtttcctctt
taatgtcttctacctgtttagcagtgttttcctgtatttctttatgtgag
tcattaaagtccttcttgatgtcctctaatatcatcatgagatatgcttt
taaatccgggtctagcttttcgagtgttttggggtgccctggactgggcg
aagtgggagtgcttggttctgatgatagtacatagtcttggtttcagtag
tagattcttatgtttacctttcgccatcaggtatctctggagtagtgttt
agttgtctctgttgtagatagattgatgctgctgggtgatctgctaccct
ctatcagcagactagggagactagcttcctccctctgacttatagtgagt
cgaacagagtacctctcatgcagtctagctctctctcttgacaggtacgt
gcctagatgtctggcattcggactcctctgaccgaatggtaaggcagaac
cggacttccgaaccgtgttgcttgtgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23612513_23613664
seq2: B6Ng01-333J03.b_48_1214 (reverse)

seq1  GGTCTTTCT--CAGAAAGGAATA--CAGCT--GAAAGACAGTCAG--AAT  42
      ||||||| |   |||||||||||   ||||   ||||||||||||  |||
seq2  GGTCTTTTTTCAAGAAAGGAATAACAAGCTCGAAAAGACAGTCAGAAAAT  50

seq1  AATATAT-AGT--CTCTTTCTTAAGGTAAGAAAAT-ATGTTCTTATTTCC  88
      ||||||| |||  |||||||| ||||||||||||| ||||||||||||||
seq2  AATATATAAGTTCCTCTTTCTAAAGGTAAGAAAATAATGTTCTTATTTCC  100

seq1  -TCTTAAAG-ACAACTTTATTGACACTATGCCAGTGAAAATTTCAGTGAA  136
       ||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGAACAACTTTATTGACACTATGCCAGTGAAAATTTCAGTGAA  150

seq1  ATTCAATGGATGTACAAAATTATAATGTTGCTGTTATTTTAGTTCTCTAA  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGGATGTACAAAATTATAATGTTGCTGTTATTTTAGTTCTCTAA  200

seq1  GAGATTACCAATCAAGTACAAACATATGTGTAGAGATCAAATATACTTGC  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACCAATCAAGTACAAACATATGTGTAGAGATCAAATATACTTGC  250

seq1  AGTATGAAACACAGACACATGAAACAAAGAGACTTGCATCCATTTAGCGA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAAACACAGACACATGAAACAAAGAGACTTGCATCCATTTAGCGA  300

seq1  TGCATACATATCACAAGCACACACTTATCTACAGAAACATTCAAATACAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACATATCACAAGCACACACTTATCTACAGAAACATTCAAATACAT  350

seq1  GTCCAAACACATGTAT-AAAAACACACATACACACAGACACAGACTATGC  385
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCCAAACACATGTATAAAAAACACACATACACACAGACACAGACTATGC  400

seq1  ATCAAAAACATCAAATAGACACTGATACACACAAAACACATACTCAGTTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAACATCAAATAGACACTGATACACACAAAACACATACTCAGTTT  450

seq1  TACACAAACACACACACACACACAAAACCCATGCACAGAGGAATATTCAT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAACACACACACACACACAAAACCCATGCACAGAGGAATATTCAT  500

seq1  AGGTTCACATAGACATGTATTGATACCCCCACATAGAGTGACATTGATAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACATAGACATGTATTGATACCCCCACATAGAGTGACATTGATAC  550

seq1  ACTGAAAAATTTATGATCTCATGCACAATCAGACAAAAATGAAAAAACAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAATTTATGATCTCATGCACAATCAGACAAAAATGAAAAAACAT  600

seq1  ACAACAAAAACACACAAAACCCAGGCACATGCAGATGCATTTATTTATTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAACACACAAAACCCAGGCACATGCAGATGCATTTATTTATTT  650

seq1  ATTTATTTATTTATTTATTTATTTATTTATTTGAGACAGGGTTTCTCTAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATTTATTTATTTGAGACAGGGTTTCTCTAT  700

seq1  ATAGCCCTGGCTGTCCTATAACTCACTCCATAGACCAGGCTGGCCTCGAA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGCTGTCCTATAACTCACTCCATAGACCAGGCTGGCCTCGAA  750

seq1  ATCAGAGATCAGACTGCCTTTCCCTCTAAAGTGCTAGGATTAAAGGCATT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGATCAGACTGCCTTTCCCTCTAAAGTGCTAGGATTAAAGGCATT  800

seq1  TGCCACCACACCCGGCGATGCATGCATTTATAATTGTACAAAGGAATATA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACACCCGGCGATGCATGCATTTATAATTGTACAAAGGAATATA  850

seq1  CATTCTGACAAAATCCACCATGCAGAAAGAAATGGAAACAGACAAATATT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGACAAAATCCACCATGCAGAAAGAAATGGAAACAGACAAATATT  900

seq1  TTCTTAACTGACTTAGACAGATAGATAGGCAGATTGGCAAAATGTTTCTA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACTGACTTAGACAGATAGATAGGCAGATTGGCAAAATGTTTCTA  950

seq1  TATATGACTCATCTCTCTCTGTTTCTCTCTGTGTGTCTCTCTGTCTTTAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACTCATCTCTCTCTGTTTCTCTCTGTGTGTCTCTCTGTCTTTAT  1000

seq1  ATATGTATATATCTATATCTCTTCATATACATATCAATCATCTATATCTA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATATCTATATCTCTTCATATACATATCAATCATCTATATCTA  1050

seq1  GTAATAGGCACAGATATAGATATACACACAGATATAGAGAAACATAGAAA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGGCACAGATATAGATATACACACAGATATAGAGAAACATAGAAA  1100

seq1  CATACAAATAGGAAGTGAGAAATATACATTCACACATCACCACACACAAA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAATAGGAAGTGAGAAATATACATTCACACATCACCACACACAAA  1150

seq1  TGTAATGAACTGAATTC  1152
      |||||||||||||||||
seq2  TGTAATGAACTGAATTC  1167