BAC Information

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BAC

Clone NameB6Ng01-333O20
Chromosome17 (Build37)
Map Location 42,271,676 - 42,272,815
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333O20.bB6Ng01-333O20.g
ACCGA119559GA119560
length1,2011,124
definitionB6Ng01-333O20.b B6Ng01-333O20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttttaagggggtatttaatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatcagatttaggattggtaaaaatcctttcccaatctgatggtggcct
ttttgtcttattgacagtgtcctttgccttacagaagctttgcactttta
tgaggtcccatttatcaattctcgatcttacagcataagccattgctgtt
ctattcaggaatttttcccctgtgcccatatctgtgaggctttcccccac
tttctcctctgaaagtttcagtgtctctggttttatgtagagttccttaa
tcccttagatttgaccttagtacaaggagataagaatggatcaattccca
ttcttctacacgataaccaccagttgtgacaacaccatttgttgaaaatg
ctgtcctttttccacttgatggttttagctcccttgtcaaagatcaagtg
accacaggtgtgcgggttcatttctgagtcttcaattctattccattggt
ctacttgtctgtcgctataccagtaccatgcagtttttatcacaattgct
ctatagtacagctttaggtcaggcatggtgattccaccagaggttctttt
atcattgagaagagtttttgctatcctaggcttttgttattccagatgaa
tttgcaattgccctttccaatttgttgaagaattgagttggaattttgat
ggggattgcaatgaatctgtagattacttttggcaagatagccattttta
ctatattgatcctgtcaatccatgagcatgggagatctttccatcttctg
agatcttctttaaattctttcttcagagacttgaagttcttatcatacag
atctttcacttccttatttagagacacaccaaggtattttatattttttg
tgactattgtgaaattccctaatttctttctcagcctgtttatcctttgt
gtagagaaggccattgacttgtcgagtattttatatccagctacttaccg
agctgtttatcagttaaggagtctcttggtggaatttttagggtcactat
atatacttatcaattcaatcaacaaaagggctatttggactctctccatt
gatccgttatctccatttgtttgctcaaatggcctctcggcctagagaac
t
gaattcaagggtttgagattccatgaaccattaccaccaccctggggtgg
gctgctttcaatatagttcttcctgctcctgtaaatatggggttattatg
gatgaggtatcatccatacacatgtaattgactccaataatcatactgac
tcactatattagatttcggtggtatcattactttcattcatcattatttg
tcaaactaggtgggatgactaggtatttgctcatgactttccaggaaaat
ccacataacccatatgtaagtcattcctccactagaaggtatagcagagt
atccattcaacaacttgaatgtagcatgaaatcagtggcctttctccaag
tcccaactaaacatgctccaataaataattgcccacttgtattcatgcaa
tcatccctgcttaactctgtgggttaattaagctaaagacgtgagggttg
gaaagaagctgtttagcaggagatgaggtagggaagagaaatggtaaggg
caagtggaagtgaccaaaaattcaataaatatatgaaatggtcaaataat
tttacaaaaggaggaaaatggaaagtttgagtcgaagaaacctagaagat
gccacctttaccaagtagttaaaaaatgctttggtaacatattcatatat
atgaaaataatcatagttttatatttttagatatctgagtctaagaatat
agtcaactgaaaataattaaatcacttagttattctatgacatttttaga
tacattataagtttatatataagaaaatatatctatcttttctcaatatc
tacactttggcaactacataaaatctacttattattttaaatatttagct
taactagagaatatatatatttcttaaacaatatccatagtgcttttatt
tgcccaaagcacatagttcctcatggttagtcaatttgagccccatagca
actctgtaattaaagattattttaggattattgcttacattttctttttt
gcattctgatattttaaaaaagacttaatattgactatctagatacaaaa
gactagtcttttttcttctagttatgataaatcacagatatgacttgttg
tagtttgggagttatctcccaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42271676_42272815
seq2: B6Ng01-333O20.g_65_1188 (reverse)

seq1  TGTTGGGAGATAACACCCCAAACCTACAACAATGTTCCATATCTGTTGAT  50
      |||||||||||||| |||  || ||||||||| ||  |||||||| ||| 
seq2  TGTTGGGAGATAACTCCC--AAACTACAACAA-GT--CATATCTG-TGA-  43

seq1  TTTTATCATAACTAAGAAG--AAAAGACTTGGTCTTTTTGGTAATCTAGA  98
       |||||||||||| |||||  ||||||| | |||||||  || |||||||
seq2  -TTTATCATAACT-AGAAGAAAAAAGAC-TAGTCTTTT--GT-ATCTAGA  87

seq1  TAGTCAATATTTAGGTTCTTTTTTAAAATAATCAAGAATTGGCAAAAAGA  148
      ||||||||||| ||  ||||||||||||| ||| |||| ||  |||||||
seq2  TAGTCAATATTAAG--TCTTTTTTAAAAT-ATC-AGAA-TGCAAAAAAGA  132

seq1  AAATGTAAGCAATTAATCCTAAAAATAATCTTTAATTACAGAGTTGCTAT  198
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  AAATGTAAGCAA-TAATCCT-AAAATAATCTTTAATTACAGAGTTGCTAT  180

seq1  GGGGCTCAAATTGACTAACCATGAGGAACTATGTGCTTTGGGCAAATAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCAAATTGACTAACCATGAGGAACTATGTGCTTTGGGCAAATAAA  230

seq1  AGCACTATGGATATTGTTTAAGAAATATATATATTCTCTAGTTAAGCTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATGGATATTGTTTAAGAAATATATATATTCTCTAGTTAAGCTAA  280

seq1  ATATTTAAAATAATAAGTAGATTTTATGTAGTTGCCAAAGTGTAGATATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAATAATAAGTAGATTTTATGTAGTTGCCAAAGTGTAGATATT  330

seq1  GAG-AAAGATAGATATATTTTCTTATATATAAACTTATAATGTATCT-AA  396
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGAAAAGATAGATATATTTTCTTATATATAAACTTATAATGTATCTAAA  380

seq1  AATGTCATAGAATAACTAAGTGATTTAATTATTTTCAGTTGACTATATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATAGAATAACTAAGTGATTTAATTATTTTCAGTTGACTATATTC  430

seq1  TTAGACTCAGATATCTAAAAATATAAAACTATGATTATTTTCATATATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTCAGATATCTAAAAATATAAAACTATGATTATTTTCATATATAT  480

seq1  GAATATGTTACCAAAGCATTTTTTAACTACTTGGTAAAGGTGGCATCTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTTACCAAAGCATTTTTTAACTACTTGGTAAAGGTGGCATCTTC  530

seq1  TAGGTTTCTTCGACTCAAACTTTCCATTTTCCTCCTTTTGTAAAATTATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTCTTCGACTCAAACTTTCCATTTTCCTCCTTTTGTAAAATTATT  580

seq1  TGACCATTTCATATATTTATTGAATTTTTGGTCACTTCCACTTGCCCTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTTCATATATTTATTGAATTTTTGGTCACTTCCACTTGCCCTTA  630

seq1  CCATTTCTCTTCCCTACCTCATCTCCTGCTAAACAGCTTCTTTCCAACCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCTTCCCTACCTCATCTCCTGCTAAACAGCTTCTTTCCAACCC  680

seq1  TCACGTCTTTAGCTTAATTAACCCACAGAGTTAAGCAGGGATGATTGCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTCTTTAGCTTAATTAACCCACAGAGTTAAGCAGGGATGATTGCAT  730

seq1  GAATACAAGTGGGCAATTATTTATTGGAGCATGTTTAGTTGGGACTTGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAAGTGGGCAATTATTTATTGGAGCATGTTTAGTTGGGACTTGGA  780

seq1  GAAAGGCCACTGATTTCATGCTACATTCAAGTTGTTGAATGGATACTCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCACTGATTTCATGCTACATTCAAGTTGTTGAATGGATACTCTG  830

seq1  CTATACCTTCTAGTGGAGGAATGACTTACATATGGGTTATGTGGATTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCTTCTAGTGGAGGAATGACTTACATATGGGTTATGTGGATTTTC  880

seq1  CTGGAAAGTCATGAGCAAATACCTAGTCATCCCACCTAGTTTGACAAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGTCATGAGCAAATACCTAGTCATCCCACCTAGTTTGACAAATA  930

seq1  ATGATGAATGAAAGTAATGATACCACCGAAATCTAATATAGTGAGTCAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAATGAAAGTAATGATACCACCGAAATCTAATATAGTGAGTCAGT  980

seq1  ATGATTATTGGAGTCAATTACATGTGTATGGATGATACCTCATCCATAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTATTGGAGTCAATTACATGTGTATGGATGATACCTCATCCATAAT  1030

seq1  AACCCCATATTTACAGGAGCAGGAAGAACTATATTGAAAGCAGCCCACCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCATATTTACAGGAGCAGGAAGAACTATATTGAAAGCAGCCCACCC  1080

seq1  CAGGGTGGTGGTAATGGTTCATGGAATCTCAAACCCTTGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGTGGTAATGGTTCATGGAATCTCAAACCCTTGAATTC  1124