BAC Information

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BAC

Clone NameB6Ng01-333P03
Chromosome17 (Build37)
Map Location 79,480,971 - 79,668,181
singlet/doubletdoublet
Overlap geneQpct, LOC668812, LOC383277
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425
Downstream geneCdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333P03.bB6Ng01-333P03.g
ACCGA119573GA119574
length1,1731,195
definitionB6Ng01-333P03.b B6Ng01-333P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,480,971 - 79,482,152)(79,666,987 - 79,668,181)
sequence
gaattccatgtgtgataagatttcaagctccctaaataaggatgtattct
gagtcttgatcagagaaaattagatgttcatctactgtctactgatgttc
atcttgctgtccacagaaaaggaactctatgaattgggattactcaagga
tcattctttggagaggaagtattttcagaattttggctatggaaatatta
tccaggatgaccacattccatttttaagaaaaggtaactgtgtgtgtatt
gttgtgcattgtgttttctctactgtgtctactgtaattattatatttta
tgtgcattttgaaattttaaaaatattattttcacatttctttttctggt
tcttttttattatatgttaattgtatgtagtatttcattatgacattttt
atagatgtatattgttgcggccgccagcagctcgcaacatgaaccgttcg
actgagaaggctactcgagctgtaagagaggaatctagacggggcgaaag
aagaaatggagctaaaacaaattcattctgatcaaagctcaaattttatt
gttgcaacactagttataaaggaagggggaggggacccgattcccgccga
ataatctctggtccagtagaaaggtgcacgtgtgtggctccgcaggttct
agcagtgggcgtggcagaccgaatgagcaggaagctccacccctgagcaa
gcaggtttcaggctgggggaggggagactacagtatataatatagtttga
tcatattcctctccctttgccctctctttttttaatttttcattttttat
tacatagtttctttatctacatttcaaattttatcccctttccccatttc
ccctctgaccccccccatcccattccccctccccctgctcactaacccac
caactcctgctcccttgtcctgggattcccctacactggggcatccagcc
ttcacaagaccaaggcctctcctctcattgatgtcccacaagtcatcctc
ctcctaatatgcggctggagccatgagtcccttgtgtactctgttgttgg
tttagtcctgggagatctggggtactgttggtcatattgtgttctcctat
ggagctgcaaccctacagctcctggttcttttctctagctccttccactg
gggaccttgtgaatcaggtccaa
gaattcctcttggctcctacagccagaattttccatttattctgcttgga
gtgccagttggcttgcagagcctgcaagcatgtgcctttggcacagctgg
acaatttgtgcacttccatggaattaaaaaggtgccacatccttgagaaa
cattcccagccacctggatttctatttattctcccctctaatcaacctgc
tccaagtcataacaagcacgtgcgtggtggaggtagagaatggcgggtgt
caacagcgatgctgccagagaagtcgcctttctccctaagccaactgcct
caattctgtgaagactgatagagaagtcatcagccagctttctgactcca
atctcattcccaaaacaatctggagatcgagggaggaaacatcccgggca
gtccttgcagtcgtctgggatttgtgaggccacaaaaggaacagcatccc
ttggagatctgtatgatagcaggtctggcacaagaggagtcatctccagt
tccctcactgctggagctgctggttagaagaccctaaacaagtattgtgc
ttctctgagacttgctcttcttgtctgcaaagagagggggcatgaataga
cccacgtctctcaaaccatccgtgatggaaggacactcttctttccttcc
ttttcttccagaaatccactgagattttgtgcagcacagtgaaatttttc
agaaaaaaagataacgattgaatactgaagcaatgtcaaattgcctttaa
atatctgagtgttgaccctttctgtatttatgtcaccatgaactgatgaa
aacaaatgacctacagtcatctgtagaccatgaagggcaccagactacca
gacatcttggttctttctcatctgtcagtctctgctgctcatagtcaacc
agcccatccactaggtttccccaagcatctaaatatgagcttaatcgtgt
ggttatacttacacttctggagtaccctcccgactcttccaggacttctt
gagggagcagaggcagctgatttctgagttcgaagccaggcctggtctta
caaggtgagtttcaggacagcagagctatacaagagaaacccttgtcttc
aaaatcatacctaacttatactatatcatcaatcaaacctaaaactatgt
ataagtaggatcctgttagcaggtgcctagtgaacatacacaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79480971_79482152
seq2: B6Ng01-333P03.b_52_1224

seq1  GAATTCCATGTGTGATAAGATTTCAAGCTCCCTAAATAAGGATGTATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGTGATAAGATTTCAAGCTCCCTAAATAAGGATGTATTCT  50

seq1  GAGTCTTGATCAGAGAAAATTAGATGTTCATCTACTGTCTACTGATGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGATCAGAGAAAATTAGATGTTCATCTACTGTCTACTGATGTTC  100

seq1  ATCTTGCTGTCCACAGAAAAGGAACTCTATGAATTGGGATTACTCAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTGTCCACAGAAAAGGAACTCTATGAATTGGGATTACTCAAGGA  150

seq1  TCATTCTTTGGAGAGGAAGTATTTTCAGAATTTTGGCTATGGAAATATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTGGAGAGGAAGTATTTTCAGAATTTTGGCTATGGAAATATTA  200

seq1  TCCAGGATGACCACATTCCATTTTTAAGAAAAGGTAACTGTGTGTGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATGACCACATTCCATTTTTAAGAAAAGGTAACTGTGTGTGTATT  250

seq1  GTTGTGCATTGTGTTTTCTCTACTGTGTCTACTGTAATTATTATATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCATTGTGTTTTCTCTACTGTGTCTACTGTAATTATTATATTTTA  300

seq1  TGTGCATTTTGAAATTTTAAAAATATTATTTTCACATTTCTTTTTCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTTGAAATTTTAAAAATATTATTTTCACATTTCTTTTTCTGGT  350

seq1  TCTTTTTTATTATATGTTAATTGTATGTAGTATTTCATTATGACATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATTATATGTTAATTGTATGTAGTATTTCATTATGACATTTTT  400

seq1  ATAGATGTATATTGTTGCGGCCGCCAGCAGCTCGCAACATGAACCGTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGTATATTGTTGCGGCCGCCAGCAGCTCGCAACATGAACCGTTCG  450

seq1  ACTGAGAAGGCTACTCGAGCTGTAAGAGAGGAATCTAGACGGGGCGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAGGCTACTCGAGCTGTAAGAGAGGAATCTAGACGGGGCGAAAG  500

seq1  AAGAAATGGAGCTAAAACAAATTCATTCTGATCAAAGCTCAAATTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGAGCTAAAACAAATTCATTCTGATCAAAGCTCAAATTTTATT  550

seq1  GTTGCAACACTAGTTATAAAGGAAGGGGGAGGGGACCCGATTCCCGCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAACACTAGTTATAAAGGAAGGGGGAGGGGACCCGATTCCCGCCGA  600

seq1  ATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCGCAGGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCGCAGGTTCT  650

seq1  AGCAGTGGGCGTGGCAGACCGAATGAGCAGGAAGCTCCACCCCTGAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGCGTGGCAGACCGAATGAGCAGGAAGCTCCACCCCTGAGCAA  700

seq1  GCAGGTTTCAGGCTGGGGGAGGGGAGACTACAGTATATAATATAGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTTCAGGCTGGGGGAGGGGAGACTACAGTATATAATATAGTTTGA  750

seq1  TCATATTCCTCTCCCTTTGCCCTCTCTTTTTTTAATTTTTCATTTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCCTCTCCCTTTGCCCTCTCTTTTTTTAATTTTTCATTTTTTAT  800

seq1  TACATAGTTTCTTTATCTACATTTCAAATTTTATCCCCTTTCCCCATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTTTCTTTATCTACATTTCAAATTTTATCCCCTTTCCCCATTTC  850

seq1  CCCTCTGACCCCCCCCATCCCATTCCCCCTCCCCCTGCTCACTAACCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGACCCCCCCCATCCCATTCCCCCTCCCCCTGCTCACTAACCCAC  900

seq1  CAACTCCTGCTCCCTTGTCCTGGGATTCCCCTACACTGGGGCATCCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTGCTCCCTTGTCCTGGGATTCCCCTACACTGGGGCATCCAGCC  950

seq1  TTCACAAGACCAAGGGCCTCTCCTCTCATTGATGTCCCACAAGGCCATCC  1000
      ||||||||||||| |||||||||||||||||||||||||||| | |||||
seq2  TTCACAAGACCAA-GGCCTCTCCTCTCATTGATGTCCCACAA-GTCATCC  998

seq1  T-CTCCTAATATGCGGCTGGAGCCATGAGTCCCCTTGTGTACTCTGGTTG  1049
      | |||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TCCTCCTAATATGCGGCTGGAGCCATGAGT-CCCTTGTGTACTCT-GTTG  1046

seq1  GTGGTTTAGTCCCTGGGAGATCTGGGGGTACTGGTTGGTTCATATTGTTG  1099
       ||||||||| |||||||||||| |||||||| ||||| |||||||| ||
seq2  TTGGTTTAGT-CCTGGGAGATCT-GGGGTACT-GTTGG-TCATATTG-TG  1091

seq1  TTCCTCCTATGGAGCTGCAAACCCCTACAGCTCCTTGGGTCCTTTCTCTA  1149
      || |||||||||||||||||  |||||||||||| ||| || ||||||||
seq2  TT-CTCCTATGGAGCTGCAA--CCCTACAGCTCC-TGGTTCTTTTCTCTA  1137

seq1  GCTCCTT-CACTGGGGACCCTGTG-ATCA-GTCCAA  1182
      ||||||| ||||||||||| |||| |||| ||||||
seq2  GCTCCTTCCACTGGGGACCTTGTGAATCAGGTCCAA  1173

seq1: chr17_79666987_79668181
seq2: B6Ng01-333P03.g_68_1262 (reverse)

seq1  GCCTGTGT-TGTTCACTAGGCACTTGCTTTACAGTGTCTTTCTTTTTTTG  49
      |||||||| |||||||||||||| ||| | ||||  ||   ||  || | 
seq2  GCCTGTGTATGTTCACTAGGCACCTGC-TAACAGGATC---CTACTTATA  46

seq1  TTTTGTTTTTGTTTTG-TTGTTGTTTTTGT-TTAGTTGGTTTTGGTTTTT  97
        | ||||| | |||| ||| || | | || | |||| | | | | ||||
seq2  CATAGTTTTAGGTTTGATTGATGATATAGTATAAGTTAGGTAT-GATTTT  95

seq1  TGAGAC-AGGGTTTCTC-TGTATAGCTCTGGCTGTCCTGGAACTCACTTT  145
        |||| |||||||||| ||||||||||| ||||||||| ||||||| ||
seq2  GAAGACAAGGGTTTCTCTTGTATAGCTCT-GCTGTCCTGAAACTCACCTT  144

seq1  GT-AGACCAGG-CTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCC  193
      || |||||||| ||||| ||||||||||||||| | ||||||||| ||||
seq2  GTAAGACCAGGCCTGGCTTCGAACTCAGAAATCAG-CTGCCTCTG-CTCC  192

seq1  CTCAAG-AGTCCTGGAAGAGTCGGGAGGGTACTCCAGAAGTGTAAGTATA  242
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGTCCTGGAAGAGTCGGGAGGGTACTCCAGAAGTGTAAGTATA  242

seq1  ACCACACGATTAAGCTCATATTTAGATGCTTGGGGAAACCTAGTGGATGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACGATTAAGCTCATATTTAGATGCTTGGGGAAACCTAGTGGATGG  292

seq1  GCTGGTTGACTATGAGCAGCAGAGACTGACAGATGAGAAAGAACCAAGAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTGACTATGAGCAGCAGAGACTGACAGATGAGAAAGAACCAAGAT  342

seq1  GTCTGGTAGTCTGGTGCCCTTCATGGTCTACAGATGACTGTAGGTCATTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTAGTCTGGTGCCCTTCATGGTCTACAGATGACTGTAGGTCATTT  392

seq1  GTTTTCATCAGTTCATGGTGACATAAATACAGAAAGGGTCAACACTCAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATCAGTTCATGGTGACATAAATACAGAAAGGGTCAACACTCAGA  442

seq1  TATTTAAAGGCAATTTGACATTGCTTCAGTATTCAATCGTTATCTTTTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGGCAATTTGACATTGCTTCAGTATTCAATCGTTATCTTTTTT  492

seq1  TCTGAAAAATTTCACTGTGCTGCACAAAATCTCAGTGGATTTCTGGAAGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAATTTCACTGTGCTGCACAAAATCTCAGTGGATTTCTGGAAGA  542

seq1  AAAGGAAGGAAAGAAGAGTGTCCTTCCATCACGGATGGTTTGAGAGACGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGAAAGAAGAGTGTCCTTCCATCACGGATGGTTTGAGAGACGT  592

seq1  GGGTCTATTCATGCCCCCTCTCTTTGCAGACAAGAAGAGCAAGTCTCAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTATTCATGCCCCCTCTCTTTGCAGACAAGAAGAGCAAGTCTCAGA  642

seq1  GAAGCACAATACTTGTTTAGGGTCTTCTAACCAGCAGCTCCAGCAGTGAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACAATACTTGTTTAGGGTCTTCTAACCAGCAGCTCCAGCAGTGAG  692

seq1  GGAACTGGAGATGACTCCTCTTGTGCCAGACCTGCTATCATACAGATCTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAGATGACTCCTCTTGTGCCAGACCTGCTATCATACAGATCTC  742

seq1  CAAGGGATGCTGTTCCTTTTGTGGCCTCACAAATCCCAGACGACTGCAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGATGCTGTTCCTTTTGTGGCCTCACAAATCCCAGACGACTGCAAG  792

seq1  GACTGCCCGGGATGTTTCCTCCCTCGATCTCCAGATTGTTTTGGGAATGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCCGGGATGTTTCCTCCCTCGATCTCCAGATTGTTTTGGGAATGA  842

seq1  GATTGGAGTCAGAAAGCTGGCTGATGACTTCTCTATCAGTCTTCACAGAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAGTCAGAAAGCTGGCTGATGACTTCTCTATCAGTCTTCACAGAA  892

seq1  TTGAGGCAGTTGGCTTAGGGAGAAAGGCGACTTCTCTGGCAGCATCGCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAGTTGGCTTAGGGAGAAAGGCGACTTCTCTGGCAGCATCGCTG  942

seq1  TTGACACCCGCCATTCTCTACCTCCACCACGCACGTGCTTGTTATGACTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCCGCCATTCTCTACCTCCACCACGCACGTGCTTGTTATGACTT  992

seq1  GGAGCAGGTTGATTAGAGGGGAGAATAAATAGAAATCCAGGTGGCTGGGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGTTGATTAGAGGGGAGAATAAATAGAAATCCAGGTGGCTGGGA  1042

seq1  ATGTTTCTCAAGGATGTGGCACCTTTTTAATTCCATGGAAGTGCACAAAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTCAAGGATGTGGCACCTTTTTAATTCCATGGAAGTGCACAAAT  1092

seq1  TGTCCAGCTGTGCCAAAGGCACATGCTTGCAGGCTCTGCAAGCCAACTGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCTGTGCCAAAGGCACATGCTTGCAGGCTCTGCAAGCCAACTGG  1142

seq1  CACTCCAAGCAGAATAAATGGAAAATTCTGGCTGTAGGAGCCAAGAGGAA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAAGCAGAATAAATGGAAAATTCTGGCTGTAGGAGCCAAGAGGAA  1192

seq1  TTC  1195
      |||
seq2  TTC  1195