BAC Information

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BAC

Clone NameB6Ng01-334B14
Chromosome17 (Build37)
Map Location 15,172,133 - 15,279,004
singlet/doubletdoublet
Overlap gene9030025P20Rik, Tcte3
Upstream geneEG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301
Downstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334B14.bB6Ng01-334B14.g
ACCGA119687GA119688
length1,2001,146
definitionB6Ng01-334B14.b B6Ng01-334B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,277,786 - 15,279,004)(15,172,133 - 15,173,285)
sequence
gaattccaagggggcacgaatatgcacagggaaggccaggaaggaaggtg
tgccagtgccagaactgagagacacagtgtggcatgagccatgtggagac
accacagtgttggtcaatcaagactgtatgcatgaggcatgtggagacac
cacatgttggtcaagactgtatgcatgaggcatgtggagataccacgagt
tggtcaggagtgtatgcatgaggcatgtggagacaccacgtgttggtcag
gcctgtatgcatgaggcatgtggagataccatgtgttggtcaggactgta
tgcatgagccatatggagacactgtccgctcaactaggactgtgagaaac
tttaggggagagcctgattgatcagaaactcagaagggcaacacacacct
gattgctgcactttgaactggggtttctctctagatcttgcttacaagac
aggttgttttctgttgttggttggttgggttttagatgacatctgaaaac
tgaaccgggctggaagagaagggagacctcctgaattctacagtacctac
tttgcctaaagtctctagtgcaaaagccagtgtctgttgttggctacatt
aaacacagtgttctatggcacactaggttctctcctagaacagctctgtg
gctcctgctctaggcctcacacatcttcacaaatgtatctgatgtctcag
ggctgctcacttgtgtattggtggagtccagatgtgtttcaactctttat
ccagccgtttcgttgaggactccaaatgtgaccttgcacaaagctgatca
ggtccttcacaaatgtgtcatttggaaaagtgactgaaacataaccctgc
atattatttaccatagcagttttatatattgtccattaagcagtaacacc
tcaagaaataattatctttttttcttattctattgagcctattgatgatg
aaataaataaatgagcaatattttttttgccaactagattaaagatcctt
aagtttgttaagttctcattggttgtcctcacataaacgctaatcatcta
aagaaatgagatttaagaaacaaaatagacccctgaaagagacctcagtg
gatacagtgaagctcacttgtgaaactacatcgctgaaccatagaaatgc
ctggacttagaacctaacctcgctaagactgaagacatttctctgaagag

gaattcttagaattgaaaacagcatgctaggatttttttttaacatgttt
agttttttgctttaatattcattagggcaattaattttactttttggttt
atttatttatttaccagcagttgattgtgtatgctgtggtattaaagtaa
ctaagacacacataaacatacacgttcaaatttgtgtgttcatatctatt
tatgtgctagcctaactgaagagcagttcactgagatgtatagatttggg
atttagtttatttcagcacacaatttttttatttgtaagtttttaataat
aaaatttattaaaattcgagggctgaagatcaaacccagggcctcaccca
tggtaggcagatgatctataaaagacaaatccagcactgtccattatttt
gacagacttattgttcaaatttcctactataatgctagattagtgtattt
ctcctttaaacctatacattttcctctcatacacacattgatgctctatc
agctgcatatttgcaagaattaatgtatcctaggcaactggccccattct
tgataaacagtgacccattttttgctgataactttatttgctttggtttt
tgctttgtctgaagtctatagctactcagttaattctgatattagtgtat
ctttcttcacctgtctccttttatgtatgtgtattttaagtgcgtttact
ataaacacagttgagtcttattttaatccattctgacaactgtgtttaaa
ttgctgtacttggactgctgacattcagtgatcgctaggatacacctgga
tgagtatcgatcccatatgctactctgctctatgagatgcccttgttctt
ctggtcctccattcttttctgttgtgctttgagaatctaacatgactcct
ctaattctttaacacatgtgtctctcttccctggcctcctctcttagctg
tagactttggcatgtgcagcaaggcagtcaactgacacttcaactgcaag
gttaaaatgactcaagttctccctccctctcttctcttacacagcattca
tctcacctctgggtaacattaacagtattcatgtgcaaacataattttat
taataattctgtttatctttttttaacaaccatatcttgtacagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15277786_15279004
seq2: B6Ng01-334B14.b_48_1247 (reverse)

seq1  CTCTTCTAGAGAAATGTCTTCCCAGTTCTTTTTAGCCGAGTGCTGGGTTT  50
      |||||| |||||||||||||  |||    | |||| |||| | | || ||
seq2  CTCTTC-AGAGAAATGTCTT--CAG----TCTTAG-CGAG-GTTAGG-TT  40

seq1  CTAAGTCCCAGCATTTCTAGTGTTCAGCGAATGTAGTTCTCACAAGGTGA  100
      ||||||||  |||||||||  |||||||| |||||||| |||||| ||||
seq2  CTAAGTCCAGGCATTTCTATGGTTCAGCG-ATGTAGTT-TCACAA-GTGA  87

seq1  GCTTCACTGTAT-CACTGAGGTCTCTTTTCAGGGGGTTCCTATTTTGTTT  149
      |||||||||||| |||||||||||| |||||||||    |||||||||||
seq2  GCTTCACTGTATCCACTGAGGTCTC-TTTCAGGGG---TCTATTTTGTTT  133

seq1  CTTAAATCTCATTTTCTTTAGATGATTAGCCGTTTATGTTGAGGACAACC  199
      ||||||||||| ||||||||||||||||| |||||||| |||||||||||
seq2  CTTAAATCTCA-TTTCTTTAGATGATTAG-CGTTTATG-TGAGGACAACC  180

seq1  AATGAGAACTTAACAAACTTAAGGATCTTTAATCTAGTTGGCAAAAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAACTTAACAAACTTAAGGATCTTTAATCTAGTTGGCAAAAAAAA  230

seq1  TATTGCTCATTTATTTATTTCATCATCAATAGGCTCAATAGAATAAGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCATTTATTTATTTCATCATCAATAGGCTCAATAGAATAAGAAA  280

seq1  AAAAGATAATTATTTCTTGAGGTGTTACTGCTTAATGGACAATATATAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAATTATTTCTTGAGGTGTTACTGCTTAATGGACAATATATAAA  330

seq1  ACTGCTATGGTAAATAATATGCAGGGTTATGTTTCAGTCACTTTTCCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATGGTAAATAATATGCAGGGTTATGTTTCAGTCACTTTTCCAAA  380

seq1  TGACACATTTGTGAAGGACCTGATCAGCTTTGTGCAAGGTCACATTTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACATTTGTGAAGGACCTGATCAGCTTTGTGCAAGGTCACATTTGGA  430

seq1  GTCCTCAACGAAACGGCTGGATAAAGAGTTGAAACACATCTGGACTCCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAACGAAACGGCTGGATAAAGAGTTGAAACACATCTGGACTCCAC  480

seq1  CAATACACAAGTGAGCAGCCCTGAGACATCAGATACATTTGTGAAGATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACACAAGTGAGCAGCCCTGAGACATCAGATACATTTGTGAAGATGT  530

seq1  GTGAGGCCTAGAGCAGGAGCCACAGAGCTGTTCTAGGAGAGAACCTAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCCTAGAGCAGGAGCCACAGAGCTGTTCTAGGAGAGAACCTAGTG  580

seq1  TGCCATAGAACACTGTGTTTAATGTAGCCAACAACAGACACTGGCTTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGAACACTGTGTTTAATGTAGCCAACAACAGACACTGGCTTTTG  630

seq1  CACTAGAGACTTTAGGCAAAGTAGGTACTGTAGAATTCAGGAGGTCTCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGACTTTAGGCAAAGTAGGTACTGTAGAATTCAGGAGGTCTCCC  680

seq1  TTCTCTTCCAGCCCGGTTCAGTTTTCAGATGTCATCTAAAACCCAACCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCCAGCCCGGTTCAGTTTTCAGATGTCATCTAAAACCCAACCAA  730

seq1  CCAACAACAGAAAACAACCTGTCTTGTAAGCAAGATCTAGAGAGAAACCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACAGAAAACAACCTGTCTTGTAAGCAAGATCTAGAGAGAAACCC  780

seq1  CAGTTCAAAGTGCAGCAATCAGGTGTGTGTTGCCCTTCTGAGTTTCTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAAAGTGCAGCAATCAGGTGTGTGTTGCCCTTCTGAGTTTCTGAT  830

seq1  CAATCAGGCTCTCCCCTAAAGTTTCTCACAGTCCTAGTTGAGCGGACAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGCTCTCCCCTAAAGTTTCTCACAGTCCTAGTTGAGCGGACAGT  880

seq1  GTCTCCATATGGCTCATGCATACAGTCCTGACCAACACATGGTATCTCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATATGGCTCATGCATACAGTCCTGACCAACACATGGTATCTCCA  930

seq1  CATGCCTCATGCATACAGGCCTGACCAACACGTGGTGTCTCCACATGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCATGCATACAGGCCTGACCAACACGTGGTGTCTCCACATGCCT  980

seq1  CATGCATACACTCCTGACCAACTCGTGGTATCTCCACATGCCTCATGCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATACACTCCTGACCAACTCGTGGTATCTCCACATGCCTCATGCAT  1030

seq1  ACAGTCTTGACCAACATGTGGTGTCTCCACATGCCTCATGCATACAGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTGACCAACATGTGGTGTCTCCACATGCCTCATGCATACAGTCT  1080

seq1  TGATTGACCAACACTGTGGTGTCTCCACATGGCTCATGCCACACTGTGTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACCAACACTGTGGTGTCTCCACATGGCTCATGCCACACTGTGTC  1130

seq1  TCTCAGTTCTGGCACTGGCACACCTTCCTTCCTGGCCTTCCCTGTGCATA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTCTGGCACTGGCACACCTTCCTTCCTGGCCTTCCCTGTGCATA  1180

seq1  TTCGTGCCCCCTTGGAATTC  1219
      ||||||||||||||||||||
seq2  TTCGTGCCCCCTTGGAATTC  1200

seq1: chr17_15172133_15173285
seq2: B6Ng01-334B14.g_70_1215

seq1  GAATTCTTAGAATTGAAAACAGCATGCTAGGATTTTTTTTTAACATGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAATTGAAAACAGCATGCTAGGATTTTTTTTTAACATGTTT  50

seq1  AGTTTTTTGCTTTAATATTCATTAGGGCAATTAATTTTACTTTTTGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTGCTTTAATATTCATTAGGGCAATTAATTTTACTTTTTGGTTT  100

seq1  ATTTATTTATTTACCAGCAGTTGATTGTGTATGCTGTGGTATTAAAGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTACCAGCAGTTGATTGTGTATGCTGTGGTATTAAAGTAA  150

seq1  CTAAGACACACATAAACATACACGTTCAAATTTGTGTGTTCATATCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACACACATAAACATACACGTTCAAATTTGTGTGTTCATATCTATT  200

seq1  TATGTGCTAGCCTAACTGAAGAGCAGTTCACTGAGATGTATAGATTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTAGCCTAACTGAAGAGCAGTTCACTGAGATGTATAGATTTGGG  250

seq1  ATTTAGTTTATTTCAGCACACAATTTTTTTATTTGTAAGTTTTTAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTATTTCAGCACACAATTTTTTTATTTGTAAGTTTTTAATAAT  300

seq1  AAAATTTATTAAAATTCGAGGGCTGAAGATCAAACCCAGGGCCTCACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATTAAAATTCGAGGGCTGAAGATCAAACCCAGGGCCTCACCCA  350

seq1  TGGTAGGCAGATGATCTATAAAAGACAAATCCAGCACTGTCCATTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGCAGATGATCTATAAAAGACAAATCCAGCACTGTCCATTATTTT  400

seq1  GACAGACTTATTGTTCAAATTTCCTACTATAATGCTAGATTAGTGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTTATTGTTCAAATTTCCTACTATAATGCTAGATTAGTGTATTT  450

seq1  CTCCTTTAAACCTATACATTTTCCTCTCATACACACATTGATGCTCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTAAACCTATACATTTTCCTCTCATACACACATTGATGCTCTATC  500

seq1  AGCTGCATATTTGCAAGAATTAATGTATCCTAGGCAACTGGCCCCATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCATATTTGCAAGAATTAATGTATCCTAGGCAACTGGCCCCATTCT  550

seq1  TGATAAACAGTGACCCATTTTTTGCTGATAACTTTATTTGCTTTGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACAGTGACCCATTTTTTGCTGATAACTTTATTTGCTTTGGTTTT  600

seq1  TGCTTTGTCTGAAGTCTATAGCTACTCAGTTAATTCTGATATTAGTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTCTGAAGTCTATAGCTACTCAGTTAATTCTGATATTAGTGTAT  650

seq1  CTTTCTTCACCTGTCTCCTTTTATGTATGTGTATTTTAAGTGCGTTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCACCTGTCTCCTTTTATGTATGTGTATTTTAAGTGCGTTTACT  700

seq1  ATAAACACAGTTGAGTCTTATTTTAATCCATTCTGACAACTGTGTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAGTTGAGTCTTATTTTAATCCATTCTGACAACTGTGTTTAAA  750

seq1  TTGCTGTACTTGGACTGCTGACATTCAGTGATCGCTAGGATACACCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTACTTGGACTGCTGACATTCAGTGATCGCTAGGATACACCTGGA  800

seq1  TGAGTATCGATCCCATATGCTACTCTGCTCTATGAGATGCCCTTGTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCGATCCCATATGCTACTCTGCTCTATGAGATGCCCTTGTTCTT  850

seq1  CTGGTCCTCCATTCTTTTCTGTTGTGCTTTGAGAATCTAACATGACTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTCCATTCTTTTCTGTTGTGCTTTGAGAATCTAACATGACTCCT  900

seq1  CTAATTCTTTAACACATGTGTCTCTCTTCCCTGGCCTCCTCTCTTAGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTTTAACACATGTGTCTCTCTTCCCTGGCCTCCTCTCTTAGCTG  950

seq1  TAGACTTTGGCATGTGCAGGCAAGGCAAGTCAACTGACACTTCAACTGCA  1000
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TAGACTTTGGCATGTGCA-GCAAGGC-AGTCAACTGACACTTCAACTGCA  998

seq1  AGGTTAAAATGACTCAAGTTCTTCCCTCCCTCTCCTTCTCTTACACAGCC  1050
      ||||||||||||||||||||| ||||||||||| |||||||||||||| |
seq2  AGGTTAAAATGACTCAAGTTC-TCCCTCCCTCT-CTTCTCTTACACAG-C  1045

seq1  ATTCATCTCACCTCTGGGT-ACATTAACAAGTATTCATGTGCAAACATAA  1099
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  ATTCATCTCACCTCTGGGTAACATTAAC-AGTATTCATGTGCAAACATAA  1094

seq1  TTTTATATATATTTCCTGTTATCTTTTTTTAACAAACCATTATCTGTTAC  1149
      ||||||  ||| |||   ||||||||||||||| ||||| |||||  |||
seq2  TTTTATTAATAATTCTGTTTATCTTTTTTTAAC-AACCA-TATCTTGTAC  1142

seq1  AGCA  1153
      ||||
seq2  AGCA  1146