BAC Information

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BAC

Clone NameB6Ng01-334M05
Chromosome17 (Build37)
Map Location 3,387,611 - 3,558,368
singlet/doubletdoublet
Overlap geneTiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144
Downstream geneNox3, 4930470H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334M05.bB6Ng01-334M05.g
ACCGA120188GA120189
length1,053626
definitionB6Ng01-334M05.b B6Ng01-334M05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,557,315 - 3,558,368)(3,387,611 - 3,388,236)
sequence
gaattctttcaaacaactccggccagaaaatggacattgttcaatgacaa
gaaaagagaaattatctagagacacagtttagttggttacggttagcttt
ttgctttacttgagtcagttggtctcttgctattggttaaagctggggtg
ctgttaacgggctggcattcagccatttgctctaaagtctaagtcttaaa
ctcggttttcagcaggcttaccttaaataagcctatagttctctatggaa
ctaagttctgaaagaagtaatggacgcgaagaaataaaaagtatctagcc
tacgggggtggggcggtaaccagtctacaaacagcaagcaaccaatcacc
atctttcctgctacaaatcaaaagtcaagcctttggaatgtcaaaggcct
gcggagcctcccagaggttacaaagaccacgcctcctagcctccgccccc
tctcctctcccaacctgcaccgctttcggcctgacgcgtcctgagctccc
agtacatacagacttcctgtcagtttcgtcatttccggcaggtttctcca
tccaaccaggtggcctcagaggcgggcagtcttctccaaggtcccacccc
ctgcgcgccgtgcacctttccagccgctgcgcgtggctgtgtatgtgggt
ctctcatggctgcctcggggaagctcggcactttccgccttcccccgttg
cccaccattcgggagatcattaagttgttcggactgcgagcggtgaaaca
gctttcccagaatttcctcctggacttgaggctgacaggtggctgagtcg
tcagttcgcccgggtctccgtggtgggcgcggccgggtgatggagcgggt
tggggcgggcggctgtcagtcaagcgctgctcctccggtcctcgcgggct
agggcgacgactggtcgaccgctttgcgggcgggagatgttccgcgcgct
ttatgatgcgccaacttgcctcctcgttagcccggctcagtaaagcgccg
tctgtaagctcagcactccaggagcaaagcaagaggattgccgccagtaa
gaa
gaattctgcagagtcagggaggggaggattggaggaaccagagaggtcga
ggactcaccatgagaacaaggccataatcagctgactgggactcatggga
atgcacagagctagggaaaccttaggggtttgacataggttttctgcata
tatgttagggctgactagtgtggggacaggaccgaggacaggggagtagg
ggctgagaggaaacgcatcccaggaaattcgactccagagaccagcatca
ggatgcagatctgagtttattgcccagcccataaacttacatacagtgtt
tgaactgatctaaatcctcggccaatcatatcttgacacactgcactcca
atgaaagccctgactaatgaggtaactcagaaggagggggaagaggactt
ctgtgaaaatgggggaagcagctatcgccctggcctcagttccttttttg
ctgtctcacaggtgtgctggcagtcaatttagagatcaggactcttcagg
aatctcaggagcctgtggtgtctccatctcccacctcctttcttcctcca
caaggttgacctccacattcagcacagaatagcttgaccttcttgtgtga
atcctaactgggggtgggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_3557315_3558368
seq2: B6Ng01-334M05.b_49_1101 (reverse)

seq1  TTCTAACTGGCGGCAATCCTCCTGCCTCTGCTCCTCGAGTGCTGAGCTTA  50
      |||| |||||||||||||||| || || ||||||| ||||||||||||||
seq2  TTCTTACTGGCGGCAATCCTCTTG-CTTTGCTCCTGGAGTGCTGAGCTTA  49

seq1  CAGAC-GCGCTTTACTGAGCCGGGCTAACGA-GAGGCAGGTTGGCGCATC  98
      ||||| ||||||||||||||||||||||||| |||||| |||||||||||
seq2  CAGACGGCGCTTTACTGAGCCGGGCTAACGAGGAGGCAAGTTGGCGCATC  99

seq1  ATAAAGCGCGCGGGAAACATCTCCCGCCCGCAAAGCGGTCGACCAGTCGT  148
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  ATAAAGCGCGCGG--AACATCTCCCGCCCGCAAAGCGGTCGACCAGTCGT  147

seq1  CGCCCTAGCCCGCGAGGACCGGAGGAGCAGCGCTTGACTGACAGCCGCCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTAGCCCGCGAGGACCGGAGGAGCAGCGCTTGACTGACAGCCGCCC  197

seq1  GCCCCAACCCGCTCCATCACCCGGCCGCGCCCACCACGGAGACCCGGGCG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAACCCGCTCCATCACCCGGCCGCGCCCACCACGGAGACCCGGGCG  247

seq1  AACTGACGACTCAGCCACCTGTCAGCCTCAAGTCCAGGAGGAAATTCTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACGACTCAGCCACCTGTCAGCCTCAAGTCCAGGAGGAAATTCTGG  297

seq1  GAAAGCTGTTTCACCGCTCGCAGTCCGAACAACTTAATGATCTCCCGAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGTTTCACCGCTCGCAGTCCGAACAACTTAATGATCTCCCGAAT  347

seq1  GGTGGGCAACGGGGGAAGGCGGAAAGTGCCGAGCTTCCCCGAGGCAGCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAACGGGGGAAGGCGGAAAGTGCCGAGCTTCCCCGAGGCAGCCA  397

seq1  TGAGAGACCCACATACACAGCCACGCGCAGCGGCTGGAAAGGTGCACGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACCCACATACACAGCCACGCGCAGCGGCTGGAAAGGTGCACGGC  447

seq1  GCGCAGGGGGTGGGACCTTGGAGAAGACTGCCCGCCTCTGAGGCCACCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGGGGTGGGACCTTGGAGAAGACTGCCCGCCTCTGAGGCCACCTG  497

seq1  GTTGGATGGAGAAACCTGCCGGAAATGACGAAACTGACAGGAAGTCTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGGAGAAACCTGCCGGAAATGACGAAACTGACAGGAAGTCTGTA  547

seq1  TGTACTGGGAGCTCAGGACGCGTCAGGCCGAAAGCGGTGCAGGTTGGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGGAGCTCAGGACGCGTCAGGCCGAAAGCGGTGCAGGTTGGGAG  597

seq1  AGGAGAGGGGGCGGAGGCTAGGAGGCGTGGTCTTTGTAACCTCTGGGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGGGCGGAGGCTAGGAGGCGTGGTCTTTGTAACCTCTGGGAGG  647

seq1  CTCCGCAGGCCTTTGACATTCCAAAGGCTTGACTTTTGATTTGTAGCAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCAGGCCTTTGACATTCCAAAGGCTTGACTTTTGATTTGTAGCAGG  697

seq1  AAAGATGGTGATTGGTTGCTTGCTGTTTGTAGACTGGTTACCGCCCCACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGTGATTGGTTGCTTGCTGTTTGTAGACTGGTTACCGCCCCACC  747

seq1  CCCGTAGGCTAGATACTTTTTATTTCTTCGCGTCCATTACTTCTTTCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGGCTAGATACTTTTTATTTCTTCGCGTCCATTACTTCTTTCAGA  797

seq1  ACTTAGTTCCATAGAGAACTATAGGCTTATTTAAGGTAAGCCTGCTGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTTCCATAGAGAACTATAGGCTTATTTAAGGTAAGCCTGCTGAAA  847

seq1  ACCGAGTTTAAGACTTAGACTTTAGAGCAAATGGCTGAATGCCAGCCCGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTTTAAGACTTAGACTTTAGAGCAAATGGCTGAATGCCAGCCCGT  897

seq1  TAACAGCACCCCAGCTTTAACCAATAGCAAGAGACCAACTGACTCAAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCACCCCAGCTTTAACCAATAGCAAGAGACCAACTGACTCAAGTA  947

seq1  AAGCAAAAAGCTAACCGTAACCAACTAAACTGTGTCTCTAGATAATTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAGCTAACCGTAACCAACTAAACTGTGTCTCTAGATAATTTCT  997

seq1  CTTTTCTTGTCATTGAACAATGTCCATTTTCTGGCCGGAGTTGTTTGAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTGTCATTGAACAATGTCCATTTTCTGGCCGGAGTTGTTTGAAA  1047

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1053

seq1: chr17_3387611_3388236
seq2: B6Ng01-334M05.g_68_693

seq1  GAATTCTGCAGAGTCAGGGAGGGGAGGATTGGAGGAACCAGAGAGGTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGAGTCAGGGAGGGGAGGATTGGAGGAACCAGAGAGGTCGA  50

seq1  GGACTCACCATGAGAACAAGGCCATAATCAGCTGACTGGGACTCATGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCACCATGAGAACAAGGCCATAATCAGCTGACTGGGACTCATGGGA  100

seq1  ATGCACAGAGCTAGGGAAACCTTAGGGGTTTGACATAGGTTTTCTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGAGCTAGGGAAACCTTAGGGGTTTGACATAGGTTTTCTGCATA  150

seq1  TATGTTAGGGCTGACTAGTGTGGGGACAGGACCGAGGACAGGGGAGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGGGCTGACTAGTGTGGGGACAGGACCGAGGACAGGGGAGTAGG  200

seq1  GGCTGAGAGGAAACGCATCCCAGGAAATTCGACTCCAGAGACCAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAGGAAACGCATCCCAGGAAATTCGACTCCAGAGACCAGCATCA  250

seq1  GGATGCAGATCTGAGTTTATTGCCCAGCCCATAAACTTACATACAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAGATCTGAGTTTATTGCCCAGCCCATAAACTTACATACAGTGTT  300

seq1  TGAACTGATCTAAATCCTCGGCCAATCATATCTTGACACACTGCACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGATCTAAATCCTCGGCCAATCATATCTTGACACACTGCACTCCA  350

seq1  ATGAAAGCCCTGACTAATGAGGTAACTCAGAAGGAGGGGGAAGAGGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCCCTGACTAATGAGGTAACTCAGAAGGAGGGGGAAGAGGACTT  400

seq1  CTGTGAAAATGGGGGAAGCAGCTATCGCCCTGGCCTCAGTTCCTTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAATGGGGGAAGCAGCTATCGCCCTGGCCTCAGTTCCTTTTTTG  450

seq1  CTGTCTCACAGGTGTGCTGGCAGTCAATTTAGAGATCAGGACTCTTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCACAGGTGTGCTGGCAGTCAATTTAGAGATCAGGACTCTTCAGG  500

seq1  AATCTCAGGAGCCTGTGGTGTCTCCATCTCCCACCTCCTTTCTTCCTCCA  550
                       |||||||||||||||||||||||||||||||||
seq2  NNNNNNNNNNNNNNNNNGTGTCTCCATCTCCCACCTCCTTTCTTCCTCCA  550

seq1  CAAGGTTGACCTCCACATTCAGCACAGAATAGCTTGACCTTCTTGTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGACCTCCACATTCAGCACAGAATAGCTTGACCTTCTTGTGTGA  600

seq1  ATCCTAACTGGGGGTGGGGGTGGGGG  626
      ||||||||||||||||||||||||||
seq2  ATCCTAACTGGGGGTGGGGGTGGGGG  626