BAC Information

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BAC

Clone NameB6Ng01-336B17
Chromosome17 (Build37)
Map Location 19,525,556 - 19,526,690
singlet/doubletsinglet
Overlap geneEG665376
Upstream geneLOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371
Downstream geneEG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336B17.bB6Ng01-336B17.g
ACCGA121139GA121140
length1,0171,135
definitionB6Ng01-336B17.b B6Ng01-336B17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaattcttctagaatacataactttttattggaggctttattta
tgttttaaatattatcccctttcccagtttccccagctcccagaaacccc
ctataccatcaaccaaccccctgcttctatgagggtattactccactcac
ccatacattcccacctccctgacctcaattcccccacactggggtatcta
tcctatcttaataggatcaatgacctctcctccaggccatcatctgctac
acatgcagctggagccaagcttgatagatagattagtccctgttagctct
aggggatctggttggttgatattgttgttcttgttatggggttgcaaacc
ccataagaactccttcatccccttctctaactcttgtactgtggacccca
tactcagtccaatggttggcttcatccatctgcctctgtatttgtagagc
tcttgcagggcctctcaggagacagctatatcaggctcctgacagcctgc
acttcttggcatccacaatagtgtctgggtttggtaactgcatatgatat
gaattctcagttggggcagtctctggatgggctttcctttagcgtctgcc
ttatactttatctccgtatttgatcctgtgagtatttgtggcgcactgag
ctgtgcactgacagcctggtgcccagtcaagcacaggcctcaaaccacag
tgacactaagggacagaggtgtttggccgtgccttcttggatcctagctc
ctgttgaagctatggcctcccacagcatctccacagaaaggtatcaggcc
attagtcatgtaggcaatgccccaagctcttggaattctgtctggaatcc
atccccacagtacctggcaacaggcctgctccttcctacagttaactggc
aataaccaggatggcccagcctacaaataaaaggagcagcttacctcttc
cttgctctactaccttcttaatcttttgctcttaagctttctcccttact
cccccccccccaccttc
gaattctttgttcagttctgatccccattttttaatggggttattttatt
ttctgaagtccaccttattgagtttttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgtcggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaagctttggagtttcat
gaggtcccatttgtcaatgctggggttttgtttttctatatgaaattaag
aatttctctttcaatgtttgtgaagaagtgtgttagaatattgatggtga
ttgctttgaatgtgttgattgcttttagtagaatcgccatatttactatg
ttgatcataccaatctatgagtattggagttctctccattttctaaggat
ttcttgacgttattgtcatatagatttttcatttacctgttaagtattac
accaagatactttattccacttctgcgtattgtgaagggtgttgttgttc
caaatattgttgatagaaatttgaacactaagataatactatatttatat
tttaaaatatcaattcaatgttattaatgaaataaaatagacactgatta
tcaattatattttagaaatatagaaatattgtgtaatacaacgtcatagg
ttttgaatgctataaaaacaccataaaaaaagcaatgcataaaagcaaaa
catttaatttgtgttggcttagtagttcacaggtccagtcaattatcatc
aaggtagcagcatggcttcttccaatcaggcatgatgcagaggggctgag
aattctctatcttcttctgaaggctactagtaagagactggtttcttggc
acttaagacaagggttttaaagcccctgcccacaatgacacacttccttc
aacaagacacacctgccactcctcgggcaaaacatatccaaactagaaca
ttatacttgctggattccataggtatgtttaatcacttgagtctatagag
aaaatagctaggcatagcatttaaaaaggcacatattgtccaacttacag
catcctcatatttataacagtttgaaacatgcaaaatcaatcaaatctat
tcggagactatttaaatcttcgaatgtatactcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19525556_19526690
seq2: B6Ng01-336B17.g_74_1201

seq1  TTGTTCAGTTCTGATCCCCATTTTTTAATGGGGTTATTTTATTTTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAGTTCTGATCCCCATTTTTTAATGGGGTTATTTTATTTTCTGAA  50

seq1  GTCCACCTTATTGAGTTTTTATATATGTTGGATATTAGTCCCCTATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCTTATTGAGTTTTTATATATGTTGGATATTAGTCCCCTATCTGA  100

seq1  TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTCGGTGGTCTTTTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATAGGTAAAGATCCTTTCCCAATCTGTCGGTGGTCTTTTTGTCT  150

seq1  TATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATGAGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATGAGGTCC  200

seq1  CATTTGTCAATGCTGGGGTTTTGTTTTTCTATATGAAATTAAGAATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCAATGCTGGGGTTTTGTTTTTCTATATGAAATTAAGAATTTCT  250

seq1  CTTTCAATGTTTGTGAAGAAGTGTGTTAGAATATTGATGGTGATTGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATGTTTGTGAAGAAGTGTGTTAGAATATTGATGGTGATTGCTTT  300

seq1  GAATGTGTTGATTGCTTTTAGTAGAATCGCCATATTTACTATGTTGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGTTGATTGCTTTTAGTAGAATCGCCATATTTACTATGTTGATCA  350

seq1  TACCAATCTATGAGTATTGGAGTTCTCTCCATTTTCTAAGGATTTCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATCTATGAGTATTGGAGTTCTCTCCATTTTCTAAGGATTTCTTGA  400

seq1  CGTTATTGTCATATAGATTTTTCATTTACCTGTTAAGTATTACACCAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTGTCATATAGATTTTTCATTTACCTGTTAAGTATTACACCAAGA  450

seq1  TACTTTATTCCACTTCTGCGTATTGTGAAGGGTGTTGTTGTTCCAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTCCACTTCTGCGTATTGTGAAGGGTGTTGTTGTTCCAAATAT  500

seq1  TGTTGATAGAAATTTGAACACTAAGATAATACTATATTTATATTTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATAGAAATTTGAACACTAAGATAATACTATATTTATATTTTAAAA  550

seq1  TATCAATTCAATGTTATTAATGAAATAAAATAGACACTGATTATCAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTCAATGTTATTAATGAAATAAAATAGACACTGATTATCAATTA  600

seq1  TATTTTAGAAATATAGAAATATTGTGTAATACAACGTCATAGGTTTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAAATATAGAAATATTGTGTAATACAACGTCATAGGTTTTGAA  650

seq1  TGCTATAAAAACACCATAAAAAAAGCAATGCATAAAAGCAAAACATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAAAACACCATAAAAAAAGCAATGCATAAAAGCAAAACATTTAA  700

seq1  TTTGTGTTGGCTTAGTAGTTCACAGGTCCAGTCAATTATCATCAAGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTGGCTTAGTAGTTCACAGGTCCAGTCAATTATCATCAAGGTAG  750

seq1  CAGCATGGCTTCTTCCAATCAGGCATGATGCAGAGGGGCTGAGAATTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGCTTCTTCCAATCAGGCATGATGCAGAGGGGCTGAGAATTCTC  800

seq1  TATCTTCTTCTGAAGGCTACTAGTAAGAGACTGGTTTCTTGGCACTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTTCTGAAGGCTACTAGTAAGAGACTGGTTTCTTGGCACTTAAG  850

seq1  ACAAGGGTTTTAAAGCCCCTGCCCACAATGACACACTTCCTTCAACAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTTTTAAAGCCCCTGCCCACAATGACACACTTCCTTCAACAAGA  900

seq1  CACACCTGCCACTCCTCGGGCAAAACATATCCAAACTAGAACATTATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGCCACTCCTCGGGCAAAACATATCCAAACTAGAACATTATACT  950

seq1  TGCTGGATTCCATAGGTATGTTTAATCACTTGAGTCTATAGAGAAAATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGATTCCATAGGTATGTTTAATCACTTGAGTCTATAGAGAAAATAG  1000

seq1  CTAGGCATAGCA-TTAAAAAAGCACATATTGTCCAACTTACAGCATCCTC  1049
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  CTAGGCATAGCATTTAAAAAGGCACATATTGTCCAACTTACAGCATCCTC  1050

seq1  ATATTTTATAACAGTTTGAACAATGCCAAAAATTCAAATTCAAATCTATT  1099
      ||| ||||||||||||||||  ||||   ||| ||||  |||||||||||
seq2  ATA-TTTATAACAGTTTGAAACATGC---AAAATCAA--TCAAATCTATT  1094

seq1  CGGAGACTAATTTTAAATCTTCG-ATGTATACCTCGA  1135
      |||||||||  |||||||||||| ||||||| |||||
seq2  CGGAGACTA--TTTAAATCTTCGAATGTATA-CTCGA  1128