BAC Information

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BAC

Clone NameB6Ng01-336E23
Chromosome17 (Build37)
Map Location 27,181,661 - 27,182,594
singlet/doubletsinglet
Overlap genenone
Upstream geneRab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1
Downstream geneItpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336E23.bB6Ng01-336E23.g
ACCGA121267GA121268
length1,0071,190
definitionB6Ng01-336E23.b B6Ng01-336E23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattgtgtaaaatgtactatgttttctttttttctttttttaaa
gatttatttattgattatatgtaagtacactgtagctgtcttcagacact
ccagaagagggagtcagatctcgttacggatggttgtgagccaccatgtg
gttgctgggatttgaactctggaccttcggaagagcagtcgggtgctctt
acccactgagccatctcaccaaccccttttaattctctctctctcttttt
ttttttatttgatttttcgagacagggtttctctatttagccctggctgt
cctggaactcactttgtagaccaggctggcctcgaactcagaaatctgcc
tgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactgccc
gactatactatgttttcattgtccattcattagttgatatacatttagac
tttttctaatttctggctcttatgcataaagcagcaatgggcatggttga
tcaagtatctctatagtaggatatagtcttttgtacccaaaagacttatg
cctaagactggtataggtggatcttgatatagatagatttccagttttct
gaagactgtcacactgatttcaatagtgtttgtaccagtttgcactctca
ctaacaatgaataagtgttccccttcccccccatctgcaccagcatgtga
tctgatttattttatttatcttggccattcttactgatgaaaggtgaaat
cttaaagcagttctgatttgcatttctctgatggctaagggtgttgataa
tttctttaagtgtttctcagccatttgtgtttcatcttttaagaactctc
ctcagttctgtagctcattttaaattgttatttgttttttatgtttagtt
tttcaagttctttatgtatatttagatactaatcctcagatattttcctg
ttctctagctgccatttactgaaatgatggtgtgttttgccataccacga
gcttttc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccacgagctaaagggatcttcaccctat
aggtgaacaacattatgactaccagtacccctgagctctgactctagctg
catatgtatcaaagatgcctagtcgcatcactgaagagagctcatgacac
gcagacttggtgtgcctgttacaggtacgcaactcaggggaagtggttgc
ttaggcataccctagtgatgatagatgtcagtgtcgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27181661_27182594
seq2: B6Ng01-336E23.b_91_447

seq1  TTTTAAGATTTATTTATTTATTATATGTAAGTACATTGTAGCTGTCTTCA  50
      ||| |||||||||||||| |||||||||||||||| ||||||||||||||
seq2  TTTAAAGATTTATTTATTGATTATATGTAAGTACACTGTAGCTGTCTTCA  50

seq1  GACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCAC  100

seq1  CATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGT  150

seq1  GCTCTTACCCACTGAGCCATCTCACCAGCCCCCCTCTGCATATTTTTTAA  200
      ||||||||||||||||||||||||||| ||||            ||||||
seq2  GCTCTTACCCACTGAGCCATCTCACCAACCCC------------TTTTAA  188

seq1  TGCAGCAGTTGCCATGGGAACGTTGCCCTCAAAGCCCTCGGTAGTCCTCT  250
      | |                                               
seq2  TTC-----------------------------------------------  191

seq1  GTTTCCGGCCCACCTTGTCTGCCAGTTGGAACCACTCCTGGGCTGGACCC  300
                                                        
seq2  --------------------------------------------------  191

seq1  AAAGCCAGGAGACAGCTTCTTGTGTCCTGAAAGTGAGGACAGAGAGCTGG  350
                                                        
seq2  --------------------------------------------------  191

seq1  TAGGCAGCTCCTTTGGGGTAGCAGGATATTCTGGACTCACCCTGATGCAG  400
                                                        
seq2  --------------------------------------------------  191

seq1  GGGATAAACCACCTCTGAGCGGGGACACACGGGATGGGGACTGTGGGATT  450
                                                        
seq2  --------------------------------------------------  191

seq1  CCAGCAGGGGGCTGTGACTCGGAGGCCATTGAGACCACGCCACCCCTCAT  500
                                                        
seq2  --------------------------------------------------  191

seq1  TCTCTCTCTCTTCCCCATCTGTAACAGCCATTTGAGAAAGGCGTTGCTCT  550
      ||||||||||||                                      
seq2  TCTCTCTCTCTT--------------------------------------  203

seq1  AGCATGAGAGGGTGGCTGGGCACAACCATCAGGCCCAGTTGGTGGTTCCA  600
                                                        
seq2  --------------------------------------------------  203

seq1  AGGAGTGTCTGAAATCTAGAAGCCGGGCTTAAGCAGTGACCAATCAGAAG  650
                                                        
seq2  --------------------------------------------------  203

seq1  CTGGTGACGCATCTGGGCTTGCTGCAGATCATGGGTGCCGCCTCCTCCCC  700
                                                        
seq2  --------------------------------------------------  203

seq1  TGTCTCAGTGTGTGTGTGTGTTTCTTGAGACAGGGTCTCATGTAGCCCAG  750
                                                        
seq2  --------------------------------------------------  203

seq1  CTTGGTCTTAACTTTGCAAGGTTAATCTTGGTTTGTTTTGTTTTTTTTTT  800
                                     ||| ||||  |||  ||||
seq2  -------------------------------TTTTTTTTTATTTGATTTT  222

seq1  TTGAGACAGGGTTTCTCTGTGTAGCCCTAGCTGTCCTGGAACTCACTTTG  850
      | |||||||||||||||| | ||||||| |||||||||||||||||||||
seq2  TCGAGACAGGGTTTCTCTATTTAGCCCTGGCTGTCCTGGAACTCACTTTG  272

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGA  900
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAA  322

seq1  GTGCTGGGATTAAAGGCGTGCACCACCA-TGCCCG  934
      ||||||||||||||||||||| |||||| ||||||
seq2  GTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCG  357