BAC Information

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BAC

Clone NameB6Ng01-336H21
Chromosome17 (Build37)
Map Location 56,983,590 - 57,159,112
singlet/doubletdoublet
Overlap geneAcsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1
Upstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2
Downstream geneKhsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336H21.bB6Ng01-336H21.g
ACCGA121397GA121398
length1,0611,085
definitionB6Ng01-336H21.b B6Ng01-336H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,983,590 - 56,984,641)(57,158,024 - 57,159,112)
sequence
gaattcaaatccccagcacccgtgtaaaaggaagaagggaaggaggcagg
agtaaggtggctaaggaggggaggtggctactgttggtgtacacttgtat
ccacccagtacaggggttttctgggggtccctggccagcctagcctactt
gggcaaacttcagacccgtgagagactgtctcaagacaaatatgtgaggg
gctggtgagatggctcaacgggtaagagcactgactgctcttcctaaggt
cctgagttcaaatcccagcaaccacatggtgccccacaaccactcgtaat
gagatctgacactcccttctggtgtgtctgaagatagctacagtgtactt
atttctaataataaataaatctttgggtcagagcgagcgagcagggttga
atggagcgagcagaggtcctacattcaatccccaacaactggatgaaggc
tcacaattatctgtacagctacagtgttctcatatacataaaataaataa
atcaatctttaggaaaaaaaaagacacgagtgtgtgcacacacagatgca
ctcatgcatgcaccttgaacacacaacagaatatcagggtccatgggagg
cctgttcctcaggccacacaggtgggctggctggagacaccagtttcaca
tggcaggatgacaggtggccgtgaaggtgactgtgggtgcagtacatgca
tgtgtgtgtgtgcacacccgcacacccccacacacacaccctgaggaagg
gagaagagtgtgtggacattacgtaaagggagtcagtcacctgcagaact
ctgccacagaatttccagagcccaggcctttctctgaacaaaagacacag
aacgtggggacataagaagatgggatcagggcaaagtgcttgccacaacg
gtgtaaggatccaagttcaaatccttccaaacccatggggaaggccagac
ccagcaggcacagcttgcgtcttctagggggatgggagtggagagcagag
attccctggaggttttgggccagcttaggctgcttgaacttggcagggta
aggacagcact
gaattccctcacccaccatttcatactgaacaaagttgcaaactccaaac
tcactaagtggggcttttggggctcacttctaagtacccacatgtcgcag
aaggttcttttgctggtaaaaggtcaggacaggctcacatagggtgtagt
gcgtctctaggcgcttgcggatggccggctctgaatcatctgcccggtgc
tccacctgtcctcgtcgtagcactctgcgcaccatggtctccatggagca
gtcaaacactatgaccatgttgggggccctgcccacctaggcagcaacca
acagaaccctgagtagagagtcttgcatccagtccccagaggccatgagg
ctggggagacatcacgaatttgtaaagtgtctgtggaggccagaagagga
catcaggtccctgggagctggagtagaggtggcagtgagctgcctacatg
gatgctaagaaccgaactcaagtcctctgcaaactggcctgaaactacac
atagactaggctggccgaccagtaagcttcagggatcagatgaagcatat
acaccacacccagcgttctatgtggctctggggatggaactcaggctcac
atacttgtagggttcgcactttgctgagccagccttatcctgtacccctt
ggtttactttttcacctcagctgtcatggaactcctgatcctcctgcctc
tgatgccagatgctggagttacaggtgtgtacggccacactagatatgtt
ttcatttttcttatttactattttttatatacagaccagatcattttaaa
tactcaaatctagcctcaaacatccgtcctgcctcagcatcccgtgtggt
gataccataaatccttttagttccctcccctcccccttttttccttttat
ggagagggtctcactatacagtcctgaaactgttcatgtagaccaggctg
gcctggaactcagagatccactctttttttggacagggtctcatgaagcc
cagatgacttgagttcctgatcgtcactttccccagttcagtgctggatg
aggtgtgttacaaccaatgccttggtctctgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56983590_56984641
seq2: B6Ng01-336H21.b_52_1111

seq1  GAATTCAAATCCCCAGCACCCGTGTAAAAGGAAGAAGGGAAGGAGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCCCAGCACCCGTGTAAAAGGAAGAAGGGAAGGAGGCAGG  50

seq1  AGTAAGGTGGCTAAGGAGGGGAGGTGGCTACTGTTGGTGTACACTTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGTGGCTAAGGAGGGGAGGTGGCTACTGTTGGTGTACACTTGTAT  100

seq1  CCACCCAGTACAGGGGTTTTCTGGGGGTCCCTGGCCAGCCTAGCCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGTACAGGGGTTTTCTGGGGGTCCCTGGCCAGCCTAGCCTACTT  150

seq1  GGGCAAACTTCAGACCCGTGAGAGACTGTCTCAAGACAAATATGTGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAACTTCAGACCCGTGAGAGACTGTCTCAAGACAAATATGTGAGGG  200

seq1  GCTGGTGAGATGGCTCAACGGGTAAGAGCACTGACTGCTCTTCCTAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAGATGGCTCAACGGGTAAGAGCACTGACTGCTCTTCCTAAGGT  250

seq1  CCTGAGTTCAAATCCCAGCAACCACATGGTGCCCCACAACCACTCGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAAATCCCAGCAACCACATGGTGCCCCACAACCACTCGTAAT  300

seq1  GAGATCTGACACTCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGACACTCCCTTCTGGTGTGTCTGAAGATAGCTACAGTGTACTT  350

seq1  ATTTCTAATAATAAATAAATCTTTGGGTCAGAGCGAGCGAGCAGGGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATAATAAATAAATCTTTGGGTCAGAGCGAGCGAGCAGGGTTGA  400

seq1  ATGGAGCGAGCAGAGGTCCTACATTCAATCCCCAACAACTGGATGAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCGAGCAGAGGTCCTACATTCAATCCCCAACAACTGGATGAAGGC  450

seq1  TCACAATTATCTGTACAGCTACAGTGTTCTCATATACATAAAATAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTATCTGTACAGCTACAGTGTTCTCATATACATAAAATAAATAA  500

seq1  ATCAATCTTTAGGAAAAAAAAAGACACGAGTGTGTGCACACACAGATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTTTAGGAAAAAAAAAGACACGAGTGTGTGCACACACAGATGCA  550

seq1  CTCATGCATGCACCTTGAACACACAACAGAATATCAGGGTCCATGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCATGCACCTTGAACACACAACAGAATATCAGGGTCCATGGGAGG  600

seq1  CCTGTTCCTCAGGCCACACAGGTGGGCTGGCTGGAGACACCAGTTTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCTCAGGCCACACAGGTGGGCTGGCTGGAGACACCAGTTTCACA  650

seq1  TGGCAGGATGACAGGTGGCCGTGAAGGTGACTGTGGGTGCAGTACATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGATGACAGGTGGCCGTGAAGGTGACTGTGGGTGCAGTACATGCA  700

seq1  TGTGTGTGTGTGCACACCCCCACACCCCCACACACACACCCTGAGGAAGG  750
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGCACACCCGCACACCCCCACACACACACCCTGAGGAAGG  750

seq1  GAGAAGAGTGTGTGGACATTACGTAAAGGGAGTCAGTCACCTGCAGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGTGTGTGGACATTACGTAAAGGGAGTCAGTCACCTGCAGAACT  800

seq1  CTGCCACAGAATTTCCAGAGCCCAGGCC-TTCTCTGAACAAAAGACACAG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGCCACAGAATTTCCAGAGCCCAGGCCTTTCTCTGAACAAAAGACACAG  850

seq1  AACGTGGGGACATAAGAAGAT-GGATCAGGGCAAAGTGCTTGCCACAACG  898
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACGTGGGGACATAAGAAGATGGGATCAGGGCAAAGTGCTTGCCACAACG  900

seq1  GTGTAAGGATCCAAGTTCAAATCC-TCCAAACCCATGGG--AGGCCAGAC  945
      |||||||||||||||||||||||| ||||||||||||||  |||||||||
seq2  GTGTAAGGATCCAAGTTCAAATCCTTCCAAACCCATGGGGAAGGCCAGAC  950

seq1  CCAGCAGGCACAGCTTGCGTCTTCTA-GGGGATGGGAGTGGAGAGCAGAG  994
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGCAGGCACAGCTTGCGTCTTCTAGGGGGATGGGAGTGGAGAGCAGAG  1000

seq1  A-TCCCTGGAAGGTTGTGGGCCAGC-TAGGCTGC-TGGACTTGGCAGGGT  1041
      | ||||||| ||||| ||||||||| |||||||| || ||||||||||||
seq2  ATTCCCTGG-AGGTTTTGGGCCAGCTTAGGCTGCTTGAACTTGGCAGGGT  1049

seq1  AAGGACAGCAC  1052
      |||||||||||
seq2  AAGGACAGCAC  1060

seq1: chr17_57158024_57159112
seq2: B6Ng01-336H21.g_69_1153 (reverse)

seq1  GAAGCAAGAGACCAA-GCA-TGGTGGTACACACCCTTCATCCCAGCACTG  48
      ||||| ||||||||| ||| |||| ||| |||| | |||| |||||||||
seq2  GAAGC-AGAGACCAAGGCATTGGTTGTA-ACACACCTCAT-CCAGCACTG  47

seq1  AAACTGGGG-AAGTGAACGATCAGGAACTCAAGGTCATCCTGGGCTTCAT  97
       |||||||| ||||| |||||||||||||||| ||||| |||||||||||
seq2  -AACTGGGGAAAGTG-ACGATCAGGAACTCAA-GTCAT-CTGGGCTTCAT  93

seq1  GAGACCCTGTCCAAAAAAGAGGTGGATCTCTGAGTTCCAGGCCAGCCTGG  147
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  GAGACCCTGTCCAAAAAAAGAGTGGATCTCTGAGTTCCAGGCCAGCCTGG  143

seq1  TCTACATGAACAGTTTCAGGACTGTATAGTGAGACCCTCTCCATAAAAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGAACAGTTTCAGGACTGTATAGTGAGACCCTCTCCATAAAAGG  193

seq1  AAAAAAGGGGGAGGGGAGGGAACTAAAAGGATTTATGGTATCACCACACG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGGGGAGGGGAGGGAACTAAAAGGATTTATGGTATCACCACACG  243

seq1  GGATGCTGAGGCAGGACGGATGTTTGAGGCTAGATTTGAGTATTTAAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGAGGCAGGACGGATGTTTGAGGCTAGATTTGAGTATTTAAAAT  293

seq1  GATCTGGTCTGTATATAAAAAATAGTAAATAAGAAAAATGAAAACATATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGTCTGTATATAAAAAATAGTAAATAAGAAAAATGAAAACATATC  343

seq1  TAGTGTGGCCGTACACACCTGTAACTCCAGCATCTGGCATCAGAGGCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGCCGTACACACCTGTAACTCCAGCATCTGGCATCAGAGGCAGG  393

seq1  AGGATCAGGAGTTCCATGACAGCTGAGGTGAAAAAGTAAACCAAGGGGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGGAGTTCCATGACAGCTGAGGTGAAAAAGTAAACCAAGGGGTA  443

seq1  CAGGATAAGGCTGGCTCAGCAAAGTGCGAACCCTACAAGTATGTGAGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAAGGCTGGCTCAGCAAAGTGCGAACCCTACAAGTATGTGAGCCT  493

seq1  GAGTTCCATCCCCAGAGCCACATAGAACGCTGGGTGTGGTGTATATGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCATCCCCAGAGCCACATAGAACGCTGGGTGTGGTGTATATGCTT  543

seq1  CATCTGATCCCTGAAGCTTACTGGTCGGCCAGCCTAGTCTATGTGTAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATCCCTGAAGCTTACTGGTCGGCCAGCCTAGTCTATGTGTAGTT  593

seq1  TCAGGCCAGTTTGCAGAGGACTTGAGTTCGGTTCTTAGCATCCATGTAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGTTTGCAGAGGACTTGAGTTCGGTTCTTAGCATCCATGTAGG  643

seq1  CAGCTCACTGCCACCTCTACTCCAGCTCCCAGGGACCTGATGTCCTCTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACTGCCACCTCTACTCCAGCTCCCAGGGACCTGATGTCCTCTTC  693

seq1  TGGCCTCCACAGACACTTTACAAATTCGTGATGTCTCCCCAGCCTCATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCACAGACACTTTACAAATTCGTGATGTCTCCCCAGCCTCATGG  743

seq1  CCTCTGGGGACTGGATGCAAGACTCTCTACTCAGGGTTCTGTTGGTTGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGGACTGGATGCAAGACTCTCTACTCAGGGTTCTGTTGGTTGCT  793

seq1  GCCTAGGTGGGCAGGGCCCCCAACATGGTCATAGTGTTTGACTGCTCCAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGTGGGCAGGGCCCCCAACATGGTCATAGTGTTTGACTGCTCCAT  843

seq1  GGAGACCATGGTGCGCAGAGTGCTACGACGAGGACAGGTGGAGCACCGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCATGGTGCGCAGAGTGCTACGACGAGGACAGGTGGAGCACCGGG  893

seq1  CAGATGATTCAGAGCCGGCCATCCGCAAGCGCCTAGAGACGCACTACACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATTCAGAGCCGGCCATCCGCAAGCGCCTAGAGACGCACTACACC  943

seq1  CTATGTGAGCCTGTCCTGACCTTTTACCAGCAAAAGAACCTTCTGCGACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGAGCCTGTCCTGACCTTTTACCAGCAAAAGAACCTTCTGCGACA  993

seq1  TGTGGGTACTTAGAAGTGAGCCCCAAAAGCCCCACTTAGTGAGTTTGGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTACTTAGAAGTGAGCCCCAAAAGCCCCACTTAGTGAGTTTGGAG  1043

seq1  TTTGCAACTTTGTTCAGTATGAAATGGTGGGTGAGGGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACTTTGTTCAGTATGAAATGGTGGGTGAGGGAATTC  1085